Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Gm25239-201ENSMUST00000174915 86 ntBASIC46.34■■■■■ 5.01
Npc1l1Q6T3U4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC42.99■■■■■ 4.47
Npc1l1Q6T3U4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC42.31■■■■■ 4.36
Npc1l1Q6T3U4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.87■■■■■ 4.13
Npc1l1Q6T3U4 Gm15042-201ENSMUST00000120212 883 ntBASIC40.31■■■■■ 4.04
Npc1l1Q6T3U4 Gm24109-201ENSMUST00000175489 103 ntBASIC40.3■■■■■ 4.04
Npc1l1Q6T3U4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.92■■■■□ 3.98
Npc1l1Q6T3U4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC39.52■■■■□ 3.92
Npc1l1Q6T3U4 Gm15045-201ENSMUST00000117359 883 ntBASIC39.46■■■■□ 3.91
Npc1l1Q6T3U4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC39.13■■■■□ 3.85
Npc1l1Q6T3U4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC39.08■■■■□ 3.85
Npc1l1Q6T3U4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
Npc1l1Q6T3U4 Gm23366-201ENSMUST00000175022 89 ntBASIC38.62■■■■□ 3.77
Npc1l1Q6T3U4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
Npc1l1Q6T3U4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
Npc1l1Q6T3U4 Psd-208ENSMUST00000224556 2034 ntBASIC37.82■■■■□ 3.64
Npc1l1Q6T3U4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC37.79■■■■□ 3.64
Npc1l1Q6T3U4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37.71■■■■□ 3.63
Npc1l1Q6T3U4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
Npc1l1Q6T3U4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.51■■■■□ 3.6
Npc1l1Q6T3U4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.44■■■■□ 3.58
Npc1l1Q6T3U4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC37.41■■■■□ 3.58
Npc1l1Q6T3U4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC37.31■■■■□ 3.56
Npc1l1Q6T3U4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC37.3■■■■□ 3.56
Npc1l1Q6T3U4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
Npc1l1Q6T3U4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC37.2■■■■□ 3.55
Npc1l1Q6T3U4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
Npc1l1Q6T3U4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC37.08■■■■□ 3.53
Npc1l1Q6T3U4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC36.98■■■■□ 3.51
Npc1l1Q6T3U4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36.92■■■■□ 3.5
Npc1l1Q6T3U4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC36.91■■■■□ 3.5
Npc1l1Q6T3U4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
Npc1l1Q6T3U4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
Npc1l1Q6T3U4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.84■■■■□ 3.49
Npc1l1Q6T3U4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
Npc1l1Q6T3U4 Gm25238-201ENSMUST00000174914 89 ntBASIC36.69■■■■□ 3.46
Npc1l1Q6T3U4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
Npc1l1Q6T3U4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36.62■■■■□ 3.45
Npc1l1Q6T3U4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.43
Npc1l1Q6T3U4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC36.38■■■■□ 3.41
Npc1l1Q6T3U4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.4
Npc1l1Q6T3U4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC36.13■■■■□ 3.37
Npc1l1Q6T3U4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC35.88■■■■□ 3.33
Npc1l1Q6T3U4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC35.73■■■■□ 3.31
Npc1l1Q6T3U4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC35.73■■■■□ 3.31
Npc1l1Q6T3U4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Npc1l1Q6T3U4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
Npc1l1Q6T3U4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
Npc1l1Q6T3U4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC35.56■■■■□ 3.28
Npc1l1Q6T3U4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
Npc1l1Q6T3U4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35.5■■■■□ 3.27
Npc1l1Q6T3U4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
Npc1l1Q6T3U4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC35.42■■■■□ 3.26
Npc1l1Q6T3U4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Npc1l1Q6T3U4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC35.37■■■■□ 3.25
Npc1l1Q6T3U4 Gm27325-201ENSMUST00000175467 74 ntBASIC35.36■■■■□ 3.25
Npc1l1Q6T3U4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
Npc1l1Q6T3U4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
Npc1l1Q6T3U4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
Npc1l1Q6T3U4 Gm25262-201ENSMUST00000174934 133 ntBASIC35.23■■■■□ 3.23
Npc1l1Q6T3U4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC35.14■■■■□ 3.22
Npc1l1Q6T3U4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
Npc1l1Q6T3U4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC35.08■■■■□ 3.21
Npc1l1Q6T3U4 Gm10524-201ENSMUST00000181931 1893 ntBASIC35.05■■■■□ 3.2
Npc1l1Q6T3U4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Npc1l1Q6T3U4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
Npc1l1Q6T3U4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC34.85■■■■□ 3.17
Npc1l1Q6T3U4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
Npc1l1Q6T3U4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
Npc1l1Q6T3U4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
Npc1l1Q6T3U4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC34.74■■■■□ 3.15
Npc1l1Q6T3U4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC34.74■■■■□ 3.15
Npc1l1Q6T3U4 Rab21-202ENSMUST00000218831 843 ntBASIC34.71■■■■□ 3.15
Npc1l1Q6T3U4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34.67■■■■□ 3.14
Npc1l1Q6T3U4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC34.65■■■■□ 3.14
Npc1l1Q6T3U4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34.61■■■■□ 3.13
Npc1l1Q6T3U4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34.61■■■■□ 3.13
Npc1l1Q6T3U4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34.61■■■■□ 3.13
Npc1l1Q6T3U4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
Npc1l1Q6T3U4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC34.55■■■■□ 3.12
Npc1l1Q6T3U4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
Npc1l1Q6T3U4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
Npc1l1Q6T3U4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC34.48■■■■□ 3.11
Npc1l1Q6T3U4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
Npc1l1Q6T3U4 Gm26115-201ENSMUST00000175605 87 ntBASIC34.47■■■■□ 3.11
Npc1l1Q6T3U4 Gm42596-201ENSMUST00000196305 1958 ntBASIC34.41■■■■□ 3.1
Npc1l1Q6T3U4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC34.38■■■■□ 3.09
Npc1l1Q6T3U4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
Npc1l1Q6T3U4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC34.32■■■■□ 3.09
Npc1l1Q6T3U4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC34.31■■■■□ 3.08
Npc1l1Q6T3U4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC34.31■■■■□ 3.08
Npc1l1Q6T3U4 Gm8109-201ENSMUST00000194076 746 ntBASIC34.29■■■■□ 3.08
Npc1l1Q6T3U4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
Npc1l1Q6T3U4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
Npc1l1Q6T3U4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
Npc1l1Q6T3U4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC34.25■■■■□ 3.07
Npc1l1Q6T3U4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
Npc1l1Q6T3U4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34.13■■■■□ 3.05
Npc1l1Q6T3U4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
Npc1l1Q6T3U4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms