Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm25239-201ENSMUST00000174915 86 ntBASIC41.96■■■■■ 4.31
Ushbp1Q8R370 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
Ushbp1Q8R370 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.39■■■■□ 3.74
Ushbp1Q8R370 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
Ushbp1Q8R370 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
Ushbp1Q8R370 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.97■■■■□ 3.51
Ushbp1Q8R370 Gm24109-201ENSMUST00000175489 103 ntBASIC36.56■■■■□ 3.44
Ushbp1Q8R370 Gm15042-201ENSMUST00000120212 883 ntBASIC36.28■■■■□ 3.4
Ushbp1Q8R370 Psd-208ENSMUST00000224556 2034 ntBASIC35.59■■■■□ 3.29
Ushbp1Q8R370 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
Ushbp1Q8R370 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.43■■■■□ 3.26
Ushbp1Q8R370 Gm15045-201ENSMUST00000117359 883 ntBASIC35.39■■■■□ 3.26
Ushbp1Q8R370 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
Ushbp1Q8R370 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
Ushbp1Q8R370 Gm23366-201ENSMUST00000175022 89 ntBASIC34.97■■■■□ 3.19
Ushbp1Q8R370 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.94■■■■□ 3.18
Ushbp1Q8R370 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Ushbp1Q8R370 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Ushbp1Q8R370 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.76■■■■□ 3.16
Ushbp1Q8R370 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
Ushbp1Q8R370 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.25■■■■□ 3.07
Ushbp1Q8R370 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
Ushbp1Q8R370 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
Ushbp1Q8R370 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
Ushbp1Q8R370 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
Ushbp1Q8R370 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.01■■■■□ 3.04
Ushbp1Q8R370 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
Ushbp1Q8R370 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.98■■■■□ 3.03
Ushbp1Q8R370 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.93■■■■□ 3.02
Ushbp1Q8R370 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.91■■■■□ 3.02
Ushbp1Q8R370 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
Ushbp1Q8R370 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.84■■■■□ 3.01
Ushbp1Q8R370 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.83■■■■□ 3.01
Ushbp1Q8R370 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Ushbp1Q8R370 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Ushbp1Q8R370 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
Ushbp1Q8R370 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Ushbp1Q8R370 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.57■■■□□ 2.96
Ushbp1Q8R370 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
Ushbp1Q8R370 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.54■■■□□ 2.96
Ushbp1Q8R370 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.5■■■□□ 2.95
Ushbp1Q8R370 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Ushbp1Q8R370 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.27■■■□□ 2.92
Ushbp1Q8R370 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Ushbp1Q8R370 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
Ushbp1Q8R370 Gm25238-201ENSMUST00000174914 89 ntBASIC33.24■■■□□ 2.91
Ushbp1Q8R370 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
Ushbp1Q8R370 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Ushbp1Q8R370 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.07■■■□□ 2.88
Ushbp1Q8R370 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.91■■■□□ 2.86
Ushbp1Q8R370 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Ushbp1Q8R370 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.75■■■□□ 2.83
Ushbp1Q8R370 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.65■■■□□ 2.82
Ushbp1Q8R370 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Ushbp1Q8R370 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Ushbp1Q8R370 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Ushbp1Q8R370 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
Ushbp1Q8R370 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
Ushbp1Q8R370 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32.45■■■□□ 2.79
Ushbp1Q8R370 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
Ushbp1Q8R370 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Ushbp1Q8R370 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.22■■■□□ 2.75
Ushbp1Q8R370 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Ushbp1Q8R370 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.16■■■□□ 2.74
Ushbp1Q8R370 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.09■■■□□ 2.73
Ushbp1Q8R370 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Ushbp1Q8R370 Gm25262-201ENSMUST00000174934 133 ntBASIC32.05■■■□□ 2.72
Ushbp1Q8R370 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Ushbp1Q8R370 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Ushbp1Q8R370 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.93■■■□□ 2.7
Ushbp1Q8R370 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Ushbp1Q8R370 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Ushbp1Q8R370 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.82■■■□□ 2.68
Ushbp1Q8R370 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.8■■■□□ 2.68
Ushbp1Q8R370 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.79■■■□□ 2.68
Ushbp1Q8R370 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ushbp1Q8R370 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
Ushbp1Q8R370 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.73■■■□□ 2.67
Ushbp1Q8R370 Gm27325-201ENSMUST00000175467 74 ntBASIC31.71■■■□□ 2.67
Ushbp1Q8R370 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.61■■■□□ 2.65
Ushbp1Q8R370 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Ushbp1Q8R370 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Ushbp1Q8R370 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Ushbp1Q8R370 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.52■■■□□ 2.64
Ushbp1Q8R370 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.5■■■□□ 2.63
Ushbp1Q8R370 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
Ushbp1Q8R370 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ushbp1Q8R370 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ushbp1Q8R370 Gm26115-201ENSMUST00000175605 87 ntBASIC31.4■■■□□ 2.62
Ushbp1Q8R370 Rab21-202ENSMUST00000218831 843 ntBASIC31.39■■■□□ 2.62
Ushbp1Q8R370 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
Ushbp1Q8R370 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.36■■■□□ 2.61
Ushbp1Q8R370 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ushbp1Q8R370 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
Ushbp1Q8R370 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Ushbp1Q8R370 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.31■■■□□ 2.6
Ushbp1Q8R370 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ushbp1Q8R370 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ushbp1Q8R370 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Ushbp1Q8R370 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms