RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 DEXIO95424 95 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 CYBAP13498 195 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 FCHSD1Q86WN1 690 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.23■□□□□ 0.353e-6■■■□□ 16.3
TRIM28-207ENST00000597136 HMX1Q9NP08 348 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-207ENST00000597136 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-207ENST00000597136 BARHL2Q9NY43 387 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 RBM27Q9P2N5 1060 aaKnown RBP17.23■□□□□ 0.35
TRIM28-207ENST00000597136 GCOM1H8Y6P7 765 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-207ENST00000597136 CAPN15O75808 1086 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 POLR2MP0CAP2 368 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 CNGA1P29973 690 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 DDIT3P35638 169 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 NAPAP54920 295 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 SOX10P56693 466 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 UBE2SQ16763 222 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 ANO1Q5XXA6 986 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 EEPD1Q7L9B9 569 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 FAM184AQ8NB25 1140 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 RMDN3Q96TC7 470 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 KATNBL1Q9H079 304 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 PSTPIP2Q9H939 334 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 ADD3Q9UEY8 706 aaKnown RBP17.22■□□□□ 0.35
TRIM28-207ENST00000597136 KIF3AQ9Y496 699 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 SYNGAP1Q96PV0 1343 aa17.22■□□□□ 0.35
TRIM28-207ENST00000597136 ZNF865P0CJ78 1059 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-207ENST00000597136 WASF1Q92558 559 aa17.21■□□□□ 0.35
TRIM28-207ENST00000597136 ZFP91Q96JP5 570 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-207ENST00000597136 DEFB118Q96PH6 123 aa17.21■□□□□ 0.35
TRIM28-207ENST00000597136 PAK6Q9NQU5 681 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-207ENST00000597136 TNRC18O15417 2968 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-207ENST00000597136 SMCO2A6NFE2 343 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 ASB14A6NK59 587 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 EIF2AK2P19525 551 aaKnown RBP17.2■□□□□ 0.34
TRIM28-207ENST00000597136 EN2P19622 333 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-207ENST00000597136 TMEM63BQ5T3F8 832 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 LARP1BQ659C4 914 aaKnown RBP17.2■□□□□ 0.34
TRIM28-207ENST00000597136 MSL3Q8N5Y2 521 aaKnown RBP17.2■□□□□ 0.34
TRIM28-207ENST00000597136 DNERQ8NFT8 737 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 MORC4Q8TE76 937 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 ALG1Q9BT22 464 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 TMEM106CQ9BVX2 250 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 MAF1Q9H063 256 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 PDGFCQ9NRA1 345 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 GJB4Q9NTQ9 266 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 MAP3K20Q9NYL2 800 aaKnown RBP17.2■□□□□ 0.34
TRIM28-207ENST00000597136 VPS54Q9P1Q0 977 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 PDE4DIPQ5VU43 2346 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 ALPK3Q96L96 1907 aa17.2■□□□□ 0.34
TRIM28-207ENST00000597136 GJB1P08034 283 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 PDCP20941 246 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 ACVR2BQ13705 512 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 LHX8Q68G74 356 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 SAMD3Q8N6K7 520 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 IL31RAQ8NI17 732 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 PXMP2Q9NR77 195 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 PIK3CDO00329 1044 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 ADCY6O43306 1168 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 SYT1P21579 422 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 PTGS1P23219 599 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 EDNRBP24530 442 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 ARHGEF16Q5VV41 709 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 TAPT1Q6NXT6 567 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 FBXO16Q8IX29 292 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-207ENST00000597136 NSUN6Q8TEA1 469 aaKnown RBP17.19■□□□□ 0.34
TRIM28-207ENST00000597136 LENG1Q96BZ8 264 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-207ENST00000597136 ABHD16BQ9H3Z7 469 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 RIC8AQ9NPQ8 531 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 TMEM260Q9NX78 707 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 ZHX1Q9UKY1 873 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-207ENST00000597136 CNPY2Q9Y2B0 182 aa17.19■□□□□ 0.34
TRIM28-207ENST00000597136 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-207ENST00000597136 SGPL1O95470 568 aa17.18■□□□□ 0.34
TRIM28-207ENST00000597136 NR3C2P08235 984 aa17.18■□□□□ 0.34
TRIM28-207ENST00000597136 CCDC144BQ3MJ40 725 aa17.18■□□□□ 0.34
TRIM28-207ENST00000597136 U2AF1L4Q8WU68 220 aaKnown RBP17.18■□□□□ 0.34
TRIM28-207ENST00000597136 PGBD1Q96JS3 809 aa17.18■□□□□ 0.34
TRIM28-207ENST00000597136 C8orf76Q96K31 380 aa17.18■□□□□ 0.34
TRIM28-207ENST00000597136 hCG_1984214I3L0E3 225 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 SEPT4O43236 478 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 MYCLP12524 364 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-207ENST00000597136 GJA8P48165 433 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 ADCY7P51828 1080 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 FOSBP53539 338 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 PDE4DQ08499 809 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 PGM5Q15124 567 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 PPP1R18Q6NYC8 613 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 ZNF713Q8N859 430 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-207ENST00000597136 FBXO18Q8NFZ0 1043 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 CUL5Q93034 780 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 PDCD2LQ9BRP1 358 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 ZMYND12Q9H0C1 365 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 CEP290O15078 2479 aa17.17■□□□□ 0.34
TRIM28-207ENST00000597136 TRIP12Q14669 1992 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-207ENST00000597136 STX6O43752 255 aa17.16■□□□□ 0.34
TRIM28-207ENST00000597136 ADCYAP1R1P41586 468 aa17.16■□□□□ 0.34
TRIM28-207ENST00000597136 MRPL12P52815 198 aaKnown RBP17.16■□□□□ 0.34
TRIM28-207ENST00000597136 IRX5P78411 483 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-207ENST00000597136 PKP1Q13835 747 aa17.16■□□□□ 0.34
TRIM28-207ENST00000597136 IWS1Q96ST2 819 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms