RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 LRRTM3Q86VH5 581 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 RASSF3Q86WH2 238 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 TPH2Q8IWU9 490 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 SLC38A3Q99624 504 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS29-210ENST00000552130 PUS7LQ9H0K6 701 aaKnown RBP7.58□□□□□ -1.2
VPS29-210ENST00000552130 RETREG1Q9H6L5 497 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 IP6K2Q9UHH9 426 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 FAM50BQ9Y247 325 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 SNX11Q9Y5W9 270 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 hCG_1984214I3L0E3 225 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 ORC4O43929 436 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 ADCY3O60266 1144 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 LIG3P49916 1009 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 PDE1CQ14123 709 aaPredicted RBP7.57□□□□□ -1.2
VPS29-210ENST00000552130 STAT4Q14765 748 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 MINDY4Q4G0A6 757 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 CCDC92Q53HC0 331 aaPredicted RBP7.57□□□□□ -1.2
VPS29-210ENST00000552130 ANGEL2Q5VTE6 544 aaKnown RBP7.57□□□□□ -1.2
VPS29-210ENST00000552130 MZT2AQ6P582 158 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 C6orf15Q6UXA7 325 aaPredicted RBP7.57□□□□□ -1.2
VPS29-210ENST00000552130 PDZD3Q86UT5 571 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 C1QL4Q86Z23 238 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 FAM178BQ8IXR5 827 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 ZBTB38Q8NAP3 1195 aaPredicted RBP7.57□□□□□ -1.2
VPS29-210ENST00000552130 ANKRD24Q8TF21 1146 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 TRIM8Q9BZR9 551 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 NCOA5Q9HCD5 579 aaKnown RBP7.57□□□□□ -1.2
VPS29-210ENST00000552130 PGAP2Q9UHJ9 254 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 PCOLCE2Q9UKZ9 415 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 PHTF1Q9UMS5 762 aa7.57□□□□□ -1.2
VPS29-210ENST00000552130 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 PLD2O14939 933 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 TLR3O15455 904 aaKnown RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 GSTP1P09211 210 aaKnown RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 TNFAIP3P21580 790 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 MCM4P33991 863 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 GBX1Q14549 363 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 FNDC3BQ53EP0 1204 aaKnown RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 MRM1Q6IN84 353 aaKnown RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 SV2BQ7L1I2 683 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 LSRQ86X29 649 aaPredicted RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 SPATS2Q86XZ4 545 aaKnown RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 CDK5RAP3Q96JB5 506 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 HEXIM2Q96MH2 286 aaKnown RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 SERINC2Q96SA4 455 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 SAGE1Q9NXZ1 904 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 PPP4R2Q9NY27 417 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 FAM53CQ9NYF3 392 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 PPM1HQ9ULR3 514 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 DIS3Q9Y2L1 958 aaKnown RBP7.56□□□□□ -1.2
VPS29-210ENST00000552130 ROBO2Q9HCK4 1378 aa7.56□□□□□ -1.2
VPS29-210ENST00000552130 TNKSO95271 1327 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 TTC36A6NLP5 189 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 SNX2O60749 519 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 CCNFP41002 786 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 GJA9P57773 515 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 NUCB1Q02818 461 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 GRM3Q14832 879 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 DACT2Q5SW24 774 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 SYDE2Q5VT97 1194 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 ZSWIM9Q86XI8 627 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 PPM1KQ8N3J5 372 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 CNTD1Q8N815 330 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 PGBD4Q96DM1 585 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 LRRC3Q9BY71 257 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 NLRC4Q9NPP4 1024 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 RIC8AQ9NPQ8 531 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 RCAN3Q9UKA8 241 aa7.55□□□□□ -1.2
VPS29-210ENST00000552130 LRRC10BA6NIK2 292 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 GOLIM4O00461 696 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 BRINP1O60477 761 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 FBXO24O75426 580 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 AGR2O95994 175 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 FAM200BP0CF97 657 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 TGFB3P10600 412 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 CCT5P48643 541 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 ZNF165P49910 485 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 EIF5P55010 431 aaKnown RBP7.54□□□□□ -1.2
VPS29-210ENST00000552130 HNRNPUQ00839 825 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS29-210ENST00000552130 ELF2Q15723 593 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 LCE5AQ5TCM9 118 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 ARMC3Q5W041 872 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 C16orf54Q6UWD8 224 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 EEPD1Q7L9B9 569 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 NKAPQ8N5F7 415 aaKnown RBP7.54□□□□□ -1.2
VPS29-210ENST00000552130 IPO4Q8TEX9 1081 aaKnown RBP7.54□□□□□ -1.2
VPS29-210ENST00000552130 RSPH1Q8WYR4 309 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 TTC17Q96AE7 1141 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 TNIP3Q96KP6 325 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 CLUHP3Q96NS8 147 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 ZC3H12CQ9C0D7 883 aaKnown RBP7.54□□□□□ -1.2
VPS29-210ENST00000552130 INTS7Q9NVH2 962 aaKnown RBP7.54□□□□□ -1.2
VPS29-210ENST00000552130 KLHL11Q9NVR0 708 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 ZNRF3Q9ULT6 936 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 DMTF1Q9Y222 760 aa7.54□□□□□ -1.2
VPS29-210ENST00000552130 LUC7L2Q9Y383 392 aaKnown RBP7.54□□□□□ -1.2
VPS29-210ENST00000552130 ABHD14A-ACY1A0A1B0GW23 586 aa7.53□□□□□ -1.2
VPS29-210ENST00000552130 PMM2O15305 246 aa7.53□□□□□ -1.2
VPS29-210ENST00000552130 FBXO21O94952 628 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms