RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PRDX5P30044 214 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 HSPA2P54652 639 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 LLGL1Q15334 1064 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 PKN1Q16512 942 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 PFKFB3Q16875 520 aaPredicted RBP14.29□□□□□ -0.12
MSH6-210ENST00000540021 VWA3BQ502W6 1294 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 EMBQ6PCB8 327 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 USP17L2Q6R6M4 530 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 PEX26Q7Z412 305 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 NEK8Q86SG6 692 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 ZSCAN29Q8IWY8 852 aaPredicted RBP14.29□□□□□ -0.12
MSH6-210ENST00000540021 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.29□□□□□ -0.121e-6■■■■■ 44.2
MSH6-210ENST00000540021 WDR17Q8IZU2 1322 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 ZSCAN5CA6NGD5 496 aaPredicted RBP14.29□□□□□ -0.12
MSH6-210ENST00000540021 EIF3HO15372 352 aaKnown RBP eCLIP14.29□□□□□ -0.126e-7■■□□□ 13.3
MSH6-210ENST00000540021 KRT25Q7Z3Z0 450 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 TBCKQ8TEA7 893 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 NLRP3Q96P20 1036 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 IFI16Q16666 785 aaKnown RBP14.29□□□□□ -0.12
MSH6-210ENST00000540021 MAN2A1Q16706 1144 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 OR2W6PQ8NHA6 318 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 ZIM3Q96PE6 472 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 GOLPH3Q9H4A6 298 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 PLAAQ9Y263 795 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 OVOS2A0A0G2JMS6 1433 aa14.29□□□□□ -0.12
MSH6-210ENST00000540021 TARSL2A2RTX5 802 aaKnown RBP14.28□□□□□ -0.12
MSH6-210ENST00000540021 RCCD1A6NED2 376 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 ARL6IP4Q66PJ3 421 aaKnown RBP14.28□□□□□ -0.12
MSH6-210ENST00000540021 ADGRA1Q86SQ6 560 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 MYOCDQ8IZQ8 938 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 CTNNBL1Q8WYA6 563 aaPredicted RBP14.28□□□□□ -0.12
MSH6-210ENST00000540021 LRRC45Q96CN5 670 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 PLEKHG2Q9H7P9 1386 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 A0A1W2PQC6 194 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 POTEMA6NI47 508 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 SRGNP10124 158 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 SLC20A2Q08357 652 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 PLS1Q14651 629 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 ELOA2Q8IYF1 753 aaPredicted RBP14.28□□□□□ -0.12
MSH6-210ENST00000540021 MGARPQ8TDB4 240 aa14.28□□□□□ -0.12
MSH6-210ENST00000540021 TCRBV5S4A2TA0A5A2 114 aa14.27□□□□□ -0.12
MSH6-210ENST00000540021 IFNAR2P48551 515 aa14.27□□□□□ -0.12
MSH6-210ENST00000540021 MECOMQ03112 1051 aa14.27□□□□□ -0.12
MSH6-210ENST00000540021 TROAPQ12815 778 aa14.27□□□□□ -0.12
MSH6-210ENST00000540021 TRIM28Q13263 835 aaKnown RBP14.27□□□□□ -0.12
MSH6-210ENST00000540021 ALS2CLQ60I27 953 aa14.27□□□□□ -0.12
MSH6-210ENST00000540021 LARP4BQ92615 738 aaKnown RBP14.27□□□□□ -0.12
MSH6-210ENST00000540021 PAIP2Q9BPZ3 127 aaKnown RBP14.27□□□□□ -0.12
MSH6-210ENST00000540021 NOVA2Q9UNW9 492 aaKnown RBP14.27□□□□□ -0.12
MSH6-210ENST00000540021 REXO2Q9Y3B8 237 aaKnown RBP14.27□□□□□ -0.12
MSH6-210ENST00000540021 RGPD8O14715 1765 aaPredicted RBP14.27□□□□□ -0.12
MSH6-210ENST00000540021 NRXN3Q9Y4C0 1643 aa14.27□□□□□ -0.12
MSH6-210ENST00000540021 BUB1BO60566 1050 aaPredicted RBP14.27□□□□□ -0.13
MSH6-210ENST00000540021 PPP1R2P41236 205 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 SSR1P43307 286 aaKnown RBP14.27□□□□□ -0.13
MSH6-210ENST00000540021 CLNS1AP54105 237 aaKnown RBP14.27□□□□□ -0.13
MSH6-210ENST00000540021 PPP1R7Q15435 360 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 PPP1R12BO60237 982 aaPredicted RBP14.27□□□□□ -0.13
MSH6-210ENST00000540021 ECM2O94769 699 aaPredicted RBP14.27□□□□□ -0.13
MSH6-210ENST00000540021 DIXDC1Q155Q3 683 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 PDXDC2PQ6P474 469 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 RUFY4Q6ZNE9 571 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 CACNA2D3Q8IZS8 1091 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 ANKS4BQ8N8V4 417 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 COA7Q96BR5 231 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 LRRC27Q9C0I9 530 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 CCDC87Q9NVE4 849 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 TSKSQ9UJT2 592 aa14.27□□□□□ -0.13
MSH6-210ENST00000540021 GOLGA6L10A0A0M3HER8 536 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 WTIPA6NIX2 430 aaPredicted RBP14.26□□□□□ -0.13
MSH6-210ENST00000540021 A6NNZ2 444 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 CETN3O15182 167 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 TUBB8Q3ZCM7 444 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 CCDC65Q8IXS2 484 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 U2AF1L4Q8WU68 220 aaKnown RBP14.26□□□□□ -0.13
MSH6-210ENST00000540021 ARPP21Q9UBL0 812 aaPredicted RBP14.26□□□□□ -0.13
MSH6-210ENST00000540021 ATP8A1Q9Y2Q0 1164 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 GSTTP1A0A1W2PQM5 241 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 CLTAP09496 248 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 CCDC172P0C7W6 258 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 HNRNPH1P31943 449 aaKnown RBP14.26□□□□□ -0.13
MSH6-210ENST00000540021 PCDHB13Q9Y5F0 798 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 GUCY2CP25092 1073 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 DDX42Q86XP3 938 aaKnown RBP eCLIP14.26□□□□□ -0.13
MSH6-210ENST00000540021 LRRC47Q8N1G4 583 aaKnown RBP14.26□□□□□ -0.13
MSH6-210ENST00000540021 CCDC26Q8TAB7 109 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 TRIM9Q9C026 710 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 UTP11Q9Y3A2 253 aaKnown RBP14.26□□□□□ -0.13
MSH6-210ENST00000540021 TMEM94Q12767 1356 aa14.26□□□□□ -0.13
MSH6-210ENST00000540021 FMN2Q9NZ56 1722 aa14.25□□□□□ -0.13
MSH6-210ENST00000540021 EVX2Q03828 476 aa14.25□□□□□ -0.13
MSH6-210ENST00000540021 PARP10Q53GL7 1025 aa14.25□□□□□ -0.13
MSH6-210ENST00000540021 FAM26FQ5R3K3 315 aa14.25□□□□□ -0.13
MSH6-210ENST00000540021 PAPD7Q5XG87 772 aaKnown RBP14.25□□□□□ -0.13
MSH6-210ENST00000540021 DNAAF5Q86Y56 855 aa14.25□□□□□ -0.13
MSH6-210ENST00000540021 TEX11Q8IYF3 940 aa14.25□□□□□ -0.13
MSH6-210ENST00000540021 RNPC3Q96LT9 517 aaKnown RBP14.25□□□□□ -0.13
MSH6-210ENST00000540021 PIGSQ96S52 555 aa14.25□□□□□ -0.13
MSH6-210ENST00000540021 TACO1Q9BSH4 297 aaKnown RBP14.25□□□□□ -0.13
MSH6-210ENST00000540021 KCNK9Q9NPC2 374 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms