RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 MMP1P03956 469 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 PDCP20941 246 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 KRT2P35908 639 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 ALDH5A1P51649 535 aaPredicted RBP16.67■□□□□ 0.26
BRCA1-223ENST00000494123 AP3B2Q13367 1082 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 IFFO2Q5TF58 517 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 JAKMIP3Q5VZ66 844 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 LARP1BQ659C4 914 aaKnown RBP16.67■□□□□ 0.26
BRCA1-223ENST00000494123 DAGLBQ8NCG7 672 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 TMEM260Q9NX78 707 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 PTCH2Q9Y6C5 1203 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 ASB14A6NK59 587 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 EIF2AK2P19525 551 aaKnown RBP16.67■□□□□ 0.26
BRCA1-223ENST00000494123 PKN2Q16513 984 aaKnown RBP16.67■□□□□ 0.26
BRCA1-223ENST00000494123 CCL14Q16627 93 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 ZNF467Q7Z7K2 595 aaPredicted RBP16.67■□□□□ 0.26
BRCA1-223ENST00000494123 FBXO18Q8NFZ0 1043 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 PXMP2Q9NR77 195 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 PCDHA6Q9UN73 950 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 PCDHA8Q9Y5H6 950 aa16.67■□□□□ 0.26
BRCA1-223ENST00000494123 ELNP15502 786 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 CLK2P49760 499 aaKnown RBP16.66■□□□□ 0.26
BRCA1-223ENST00000494123 GNL2Q13823 731 aaKnown RBP16.66■□□□□ 0.26
BRCA1-223ENST00000494123 OLFML2BQ68BL8 750 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 DIS3L2Q8IYB7 885 aaKnown RBP16.66■□□□□ 0.26
BRCA1-223ENST00000494123 SLAIN1Q8ND83 568 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 RASGRP4Q8TDF6 673 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 PXYLP1Q8TE99 480 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 PGBD1Q96JS3 809 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 FGD4Q96M96 766 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 TINF2Q9BSI4 451 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 ANO3Q9BYT9 981 aa16.66■□□□□ 0.26
BRCA1-223ENST00000494123 RBM19Q9Y4C8 960 aaKnown RBP16.66■□□□□ 0.26
BRCA1-223ENST00000494123 LOC102724159A0A0B4J2E5 919 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 ADAMTS3O15072 1205 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 UBXN2AP68543 259 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 PDE4DQ08499 809 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 PWP2Q15269 919 aaKnown RBP16.65■□□□□ 0.26
BRCA1-223ENST00000494123 NPY5RQ15761 445 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 MFSD14CQ5VZR4 134 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 FBXO46Q6PJ61 603 aaPredicted RBP16.65■□□□□ 0.26
BRCA1-223ENST00000494123 ARMCX2Q7L311 632 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 MSL3Q8N5Y2 521 aaKnown RBP16.65■□□□□ 0.26
BRCA1-223ENST00000494123 TRIB2Q92519 343 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 IWS1Q96ST2 819 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 FLRT1Q9NZU1 646 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 ASTN1O14525 1302 aa16.65■□□□□ 0.26
BRCA1-223ENST00000494123 CCDC194A0A1B0GVG4 234 aa16.64■□□□□ 0.25
BRCA1-223ENST00000494123 GRK4P32298 578 aa16.64■□□□□ 0.25
BRCA1-223ENST00000494123 PGM5Q15124 567 aa16.64■□□□□ 0.25
BRCA1-223ENST00000494123 MAMDC4Q6UXC1 1216 aa16.64■□□□□ 0.25
BRCA1-223ENST00000494123 PDCD2LQ9BRP1 358 aa16.64■□□□□ 0.25
BRCA1-223ENST00000494123 SYNGAP1Q96PV0 1343 aa16.64■□□□□ 0.25
BRCA1-223ENST00000494123 MCM3APO60318 1980 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 VPS37CA5D8V6 355 aaPredicted RBP16.63■□□□□ 0.25
BRCA1-223ENST00000494123 HMGCRP04035 888 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 NR3C2P08235 984 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 MYCLP12524 364 aaPredicted RBP16.63■□□□□ 0.25
BRCA1-223ENST00000494123 CYP2C19P33261 490 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 SLC9C1Q4G0N8 1177 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 MCTP1Q6DN14 999 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 KRT25Q7Z3Z0 450 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 OXER1Q8TDS5 423 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.63■□□□□ 0.25
BRCA1-223ENST00000494123 CNPY2Q9Y2B0 182 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 BTBD18B2RXH4 712 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 CCND2P30279 289 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 NR5A1Q13285 461 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 STXBP2Q15833 593 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 DDX49Q9Y6V7 483 aaKnown RBP16.63■□□□□ 0.25
BRCA1-223ENST00000494123 FRMPD4Q14CM0 1322 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 RPTORQ8N122 1335 aa16.63■□□□□ 0.25
BRCA1-223ENST00000494123 M0R2N6 131 aa16.62■□□□□ 0.25
BRCA1-223ENST00000494123 SYT1P21579 422 aa16.62■□□□□ 0.25
BRCA1-223ENST00000494123 NONOQ15233 471 aaKnown RBP eCLIP16.62■□□□□ 0.25
BRCA1-223ENST00000494123 IL31RAQ8NI17 732 aa16.62■□□□□ 0.25
BRCA1-223ENST00000494123 MORC4Q8TE76 937 aa16.62■□□□□ 0.25
BRCA1-223ENST00000494123 SH3TC2Q8TF17 1288 aa16.62■□□□□ 0.25
BRCA1-223ENST00000494123 FOXP1Q9H334 677 aaPredicted RBP16.62■□□□□ 0.25
BRCA1-223ENST00000494123 LRRC37A2A6NM11 1700 aa16.62■□□□□ 0.25
BRCA1-223ENST00000494123 EDNRBP24530 442 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 SREBF1P36956 1147 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 PCNX4Q63HM2 1172 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 XRRA1Q6P2D8 792 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 PIK3AP1Q6ZUJ8 805 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 EEPD1Q7L9B9 569 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 VSIG10LQ86VR7 867 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 ABHD16BQ9H3Z7 469 aa16.61■□□□□ 0.25
BRCA1-223ENST00000494123 ZHX1Q9UKY1 873 aaPredicted RBP16.61■□□□□ 0.25
BRCA1-223ENST00000494123 MYH7BA7E2Y1 1941 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 STX6O43752 255 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 EIF3JO75822 258 aaKnown RBP16.6■□□□□ 0.25
BRCA1-223ENST00000494123 INHAP05111 366 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 PRKAR2AP13861 404 aaKnown RBP16.6■□□□□ 0.25
BRCA1-223ENST00000494123 ZNF76P36508 570 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 ARHGAP4P98171 946 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 TRIM32Q13049 653 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 TBCKQ8TEA7 893 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 VTA1Q9NP79 307 aa16.6■□□□□ 0.25
BRCA1-223ENST00000494123 STAM2O75886 525 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms