RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 RPRD2Q5VT52 1461 aaKnown RBP26.94■■□□□ 1.9
PDLIM3-212ENST00000620787 TEX14Q8IWB6 1497 aa26.94■■□□□ 1.9
PDLIM3-212ENST00000620787 TARBP1Q13395 1621 aaKnown RBP26.94■■□□□ 1.9
PDLIM3-212ENST00000620787 ZBED9Q6R2W3 1325 aa26.93■■□□□ 1.9
PDLIM3-212ENST00000620787 WDR62O43379 1518 aa26.93■■□□□ 1.9
PDLIM3-212ENST00000620787 IQGAP2Q13576 1575 aa26.92■■□□□ 1.9
PDLIM3-212ENST00000620787 FOXD1Q16676 465 aa26.92■■□□□ 1.9
PDLIM3-212ENST00000620787 PBRM1Q86U86 1689 aa26.92■■□□□ 1.9
PDLIM3-212ENST00000620787 ANKRD30BQ9BXX2 1392 aa26.92■■□□□ 1.9
PDLIM3-212ENST00000620787 FAM9BQ8IZU0 186 aa26.9■■□□□ 1.9
PDLIM3-212ENST00000620787 MRS2Q9HD23 443 aa26.9■■□□□ 1.9
PDLIM3-212ENST00000620787 NBPF8Q3BBV2 869 aa26.89■■□□□ 1.9
PDLIM3-212ENST00000620787 SPATA31E1Q6ZUB1 1445 aa26.89■■□□□ 1.9
PDLIM3-212ENST00000620787 ROCK1Q13464 1354 aa26.87■■□□□ 1.89
PDLIM3-212ENST00000620787 DNMT1P26358 1616 aaKnown RBP26.87■■□□□ 1.89
PDLIM3-212ENST00000620787 DAPK1P53355 1430 aa26.86■■□□□ 1.89
PDLIM3-212ENST00000620787 KIF7Q2M1P5 1343 aa26.84■■□□□ 1.89
PDLIM3-212ENST00000620787 PDS5BQ9NTI5 1447 aa26.83■■□□□ 1.89
PDLIM3-212ENST00000620787 ERICH6Q7L0X2 663 aa26.83■■□□□ 1.88
PDLIM3-212ENST00000620787 B4GALNT3Q6L9W6 998 aa26.81■■□□□ 1.88
PDLIM3-212ENST00000620787 ADAMTS12P58397 1594 aa26.81■■□□□ 1.88
PDLIM3-212ENST00000620787 ABCC5O15440 1437 aa26.79■■□□□ 1.88
PDLIM3-212ENST00000620787 DNAJC5BQ9UF47 199 aa26.77■■□□□ 1.88
PDLIM3-212ENST00000620787 ARID3CA6NKF2 412 aa26.73■■□□□ 1.87
PDLIM3-212ENST00000620787 SMG6Q86US8 1419 aaKnown RBP26.72■■□□□ 1.87
PDLIM3-212ENST00000620787 DHX29Q7Z478 1369 aaKnown RBP26.71■■□□□ 1.87
PDLIM3-212ENST00000620787 MBD5Q9P267 1494 aa26.71■■□□□ 1.87
PDLIM3-212ENST00000620787 BCORL1Q5H9F3 1711 aa26.7■■□□□ 1.87
PDLIM3-212ENST00000620787 SLC4A1APQ9BWU0 796 aaKnown RBP26.7■■□□□ 1.87
PDLIM3-212ENST00000620787 PZPP20742 1482 aa26.7■■□□□ 1.86
PDLIM3-212ENST00000620787 ZNF644Q9H582 1327 aaPredicted RBP26.67■■□□□ 1.86
PDLIM3-212ENST00000620787 ADGBQ8N7X0 1667 aa26.65■■□□□ 1.86
PDLIM3-212ENST00000620787 KIAA0556O60303 1618 aa26.64■■□□□ 1.86
PDLIM3-212ENST00000620787 NUP153P49790 1475 aaKnown RBP26.64■■□□□ 1.85
PDLIM3-212ENST00000620787 KIF14Q15058 1648 aa26.63■■□□□ 1.85
PDLIM3-212ENST00000620787 RAPGEF6Q8TEU7 1601 aa26.62■■□□□ 1.85
PDLIM3-212ENST00000620787 RNF123Q5XPI4 1314 aa26.61■■□□□ 1.85
PDLIM3-212ENST00000620787 KDM5CP41229 1560 aa26.61■■□□□ 1.85
PDLIM3-212ENST00000620787 DISP1Q96F81 1524 aa26.6■■□□□ 1.85
PDLIM3-212ENST00000620787 MYT1LQ9UL68 1186 aa26.6■■□□□ 1.85
PDLIM3-212ENST00000620787 NUDCQ9Y266 331 aa26.6■■□□□ 1.85
PDLIM3-212ENST00000620787 USP47Q96K76 1375 aa26.59■■□□□ 1.85
PDLIM3-212ENST00000620787 CROCC2H7BZ55 1655 aa26.57■■□□□ 1.84
PDLIM3-212ENST00000620787 CAMSAP2Q08AD1 1489 aa26.57■■□□□ 1.84
PDLIM3-212ENST00000620787 ITSN2Q9NZM3 1697 aa26.56■■□□□ 1.84
PDLIM3-212ENST00000620787 KIAA1107Q9UPP5 1409 aa26.56■■□□□ 1.84
PDLIM3-212ENST00000620787 ADGRL2O95490 1459 aa26.52■■□□□ 1.84
PDLIM3-212ENST00000620787 NOP58Q9Y2X3 529 aaKnown RBP26.52■■□□□ 1.84
PDLIM3-212ENST00000620787 KIAA0586Q9BVV6 1533 aa26.52■■□□□ 1.84
PDLIM3-212ENST00000620787 ARID4BQ4LE39 1312 aaPredicted RBP26.52■■□□□ 1.84
PDLIM3-212ENST00000620787 TROQ12816 1431 aaPredicted RBP26.48■■□□□ 1.83
PDLIM3-212ENST00000620787 CNGB1Q14028 1251 aaPredicted RBP26.48■■□□□ 1.83
PDLIM3-212ENST00000620787 ADCY10Q96PN6 1610 aa26.47■■□□□ 1.83
PDLIM3-212ENST00000620787 PRG4Q92954 1404 aaPredicted RBP26.47■■□□□ 1.83
PDLIM3-212ENST00000620787 CCDC136Q96JN2 1154 aa26.47■■□□□ 1.83
PDLIM3-212ENST00000620787 POLR3GLQ9BT43 218 aa26.47■■□□□ 1.83
PDLIM3-212ENST00000620787 PNISRQ8TF01 805 aaKnown RBP26.46■■□□□ 1.83
PDLIM3-212ENST00000620787 UHRF1BP1Q6BDS2 1440 aa26.46■■□□□ 1.83
PDLIM3-212ENST00000620787 PAK3O75914 559 aaPredicted RBP26.46■■□□□ 1.83
PDLIM3-212ENST00000620787 RALGAPBQ86X10 1494 aa26.46■■□□□ 1.83
PDLIM3-212ENST00000620787 ZNF326Q5BKZ1 582 aaKnown RBP26.45■■□□□ 1.82
PDLIM3-212ENST00000620787 GPATCH8Q9UKJ3 1502 aaKnown RBP26.45■■□□□ 1.82
PDLIM3-212ENST00000620787 DEKP35659 375 aaKnown RBP26.44■■□□□ 1.82
PDLIM3-212ENST00000620787 ROCK2O75116 1388 aaKnown RBP26.44■■□□□ 1.82
PDLIM3-212ENST00000620787 MRC2Q9UBG0 1479 aa26.43■■□□□ 1.82
PDLIM3-212ENST00000620787 PKD2Q13563 968 aa26.43■■□□□ 1.82
PDLIM3-212ENST00000620787 CFDP1Q9UEE9 299 aaPredicted RBP26.42■■□□□ 1.82
PDLIM3-212ENST00000620787 ZNF608Q9ULD9 1512 aaPredicted RBP26.41■■□□□ 1.82
PDLIM3-212ENST00000620787 LRPPRCP42704 1394 aaKnown RBP26.39■■□□□ 1.81
PDLIM3-212ENST00000620787 E9PCH4 1651 aa26.39■■□□□ 1.81
PDLIM3-212ENST00000620787 ARHGEF12Q9NZN5 1544 aa26.38■■□□□ 1.81
PDLIM3-212ENST00000620787 ANKRD30AQ9BXX3 1397 aa26.37■■□□□ 1.81
PDLIM3-212ENST00000620787 TMC1Q8TDI8 760 aa26.37■■□□□ 1.81
PDLIM3-212ENST00000620787 KIF15Q9NS87 1388 aa26.37■■□□□ 1.81
PDLIM3-212ENST00000620787 SENP3-EIF4A1A0A087X0R7 540 aa26.35■■□□□ 1.81
PDLIM3-212ENST00000620787 GRIN2AQ12879 1464 aa26.35■■□□□ 1.81
PDLIM3-212ENST00000620787 ANKRD50Q9ULJ7 1429 aa26.35■■□□□ 1.81
PDLIM3-212ENST00000620787 IFT140Q96RY7 1462 aa26.35■■□□□ 1.81
PDLIM3-212ENST00000620787 IPO9Q96P70 1041 aaKnown RBP26.34■■□□□ 1.81
PDLIM3-212ENST00000620787 CDC42BPAQ5VT25 1732 aa26.34■■□□□ 1.81
PDLIM3-212ENST00000620787 ANP32AP39687 249 aaKnown RBP26.33■■□□□ 1.81
PDLIM3-212ENST00000620787 BRD4O60885 1362 aaPredicted RBP26.32■■□□□ 1.8
PDLIM3-212ENST00000620787 PLB1Q6P1J6 1458 aa26.32■■□□□ 1.8
PDLIM3-212ENST00000620787 NBR1Q14596 966 aa26.32■■□□□ 1.8
PDLIM3-212ENST00000620787 ZNF777Q9ULD5 760 aaPredicted RBP26.32■■□□□ 1.8
PDLIM3-212ENST00000620787 KDM5DQ9BY66 1539 aa26.31■■□□□ 1.8
PDLIM3-212ENST00000620787 CARD11Q9BXL7 1154 aa26.31■■□□□ 1.8
PDLIM3-212ENST00000620787 KTN1Q86UP2 1357 aaKnown RBP26.3■■□□□ 1.8
PDLIM3-212ENST00000620787 CEP170Q5SW79 1584 aa26.3■■□□□ 1.8
PDLIM3-212ENST00000620787 MYBBP1AQ9BQG0 1328 aaKnown RBP26.29■■□□□ 1.8
PDLIM3-212ENST00000620787 SHANK2Q9UPX8 1470 aa26.27■■□□□ 1.8
PDLIM3-212ENST00000620787 NUP155O75694 1391 aa26.26■■□□□ 1.79
PDLIM3-212ENST00000620787 EIF4G3O43432 1585 aaKnown RBP26.25■■□□□ 1.79
PDLIM3-212ENST00000620787 RALBP1Q15311 655 aa26.25■■□□□ 1.79
PDLIM3-212ENST00000620787 ST20-MTHFSA0A0A6YYL1 179 aa26.24■■□□□ 1.79
PDLIM3-212ENST00000620787 RRP1P56182 461 aaKnown RBP26.24■■□□□ 1.79
PDLIM3-212ENST00000620787 C9orf84Q5VXU9 1444 aa26.23■■□□□ 1.79
PDLIM3-212ENST00000620787 ZBTB47Q9UFB7 747 aaPredicted RBP26.21■■□□□ 1.79
PDLIM3-212ENST00000620787 PTPRGP23470 1445 aa26.19■■□□□ 1.78
PDLIM3-212ENST00000620787 ABCC10Q5T3U5 1492 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms