RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 DHX8Q14562 1220 aaKnown RBP10.96□□□□□ -0.65
TTC28-208ENST00000612946 PMFBP1Q8TBY8 1022 aa10.96□□□□□ -0.65
TTC28-208ENST00000612946 DIAPH3Q9NSV4 1193 aa10.96□□□□□ -0.65
TTC28-208ENST00000612946 FHAD1B1AJZ9 1412 aa10.94□□□□□ -0.66
TTC28-208ENST00000612946 USP8P40818 1118 aa10.94□□□□□ -0.66
TTC28-208ENST00000612946 RALBP1Q15311 655 aa10.94□□□□□ -0.66
TTC28-208ENST00000612946 IPO8O15397 1037 aaKnown RBP10.94□□□□□ -0.66
TTC28-208ENST00000612946 ABCC9O60706 1549 aa10.94□□□□□ -0.66
TTC28-208ENST00000612946 AAMPQ13685 434 aa10.94□□□□□ -0.66
TTC28-208ENST00000612946 BAZ1AQ9NRL2 1556 aaPredicted RBP10.93□□□□□ -0.66
TTC28-208ENST00000612946 MRE11P49959 708 aa10.92□□□□□ -0.66
TTC28-208ENST00000612946 KTN1Q86UP2 1357 aaKnown RBP10.92□□□□□ -0.66
TTC28-208ENST00000612946 RCAN3Q9UKA8 241 aa10.92□□□□□ -0.66
TTC28-208ENST00000612946 CAVIN1Q6NZI2 390 aaKnown RBP10.92□□□□□ -0.66
TTC28-208ENST00000612946 NUDCQ9Y266 331 aa10.92□□□□□ -0.66
TTC28-208ENST00000612946 ST18O60284 1047 aa10.91□□□□□ -0.66
TTC28-208ENST00000612946 CCDC39Q9UFE4 941 aa10.91□□□□□ -0.66
TTC28-208ENST00000612946 SALL2Q9Y467 1007 aaPredicted RBP10.91□□□□□ -0.66
TTC28-208ENST00000612946 SCRIBQ14160 1630 aa10.91□□□□□ -0.66
TTC28-208ENST00000612946 CENPQQ7L2Z9 268 aaPredicted RBP10.91□□□□□ -0.66
TTC28-208ENST00000612946 ZBED9Q6R2W3 1325 aa10.91□□□□□ -0.66
TTC28-208ENST00000612946 CCNB3Q8WWL7 1395 aa10.91□□□□□ -0.66
TTC28-208ENST00000612946 EIF3AQ14152 1382 aaKnown RBP10.9□□□□□ -0.66
TTC28-208ENST00000612946 FGD1P98174 961 aa10.9□□□□□ -0.66
TTC28-208ENST00000612946 CDR1P51861 262 aa10.9□□□□□ -0.66
TTC28-208ENST00000612946 FAM161AQ3B820 660 aa10.9□□□□□ -0.66
TTC28-208ENST00000612946 HMMRO75330 724 aa10.9□□□□□ -0.66
TTC28-208ENST00000612946 KIF3AQ9Y496 699 aa10.9□□□□□ -0.66
TTC28-208ENST00000612946 RDXP35241 583 aaKnown RBP10.9□□□□□ -0.67
TTC28-208ENST00000612946 FAM13BQ9NYF5 915 aa10.89□□□□□ -0.67
TTC28-208ENST00000612946 CHMP4AQ9BY43 222 aa10.88□□□□□ -0.67
TTC28-208ENST00000612946 KIAA1211Q6ZU35 1233 aa10.88□□□□□ -0.67
TTC28-208ENST00000612946 AK7Q96M32 723 aa10.88□□□□□ -0.67
TTC28-208ENST00000612946 DCTN1Q14203 1278 aa10.88□□□□□ -0.67
TTC28-208ENST00000612946 PDCL2Q8N4E4 241 aa10.88□□□□□ -0.67
TTC28-208ENST00000612946 SLKQ9H2G2 1235 aaPredicted RBP10.88□□□□□ -0.67
TTC28-208ENST00000612946 CCP110O43303 1012 aa10.88□□□□□ -0.67
TTC28-208ENST00000612946 GZF1Q9H116 711 aaPredicted RBP10.88□□□□□ -0.67
TTC28-208ENST00000612946 KCNJ4P48050 445 aa10.87□□□□□ -0.67
TTC28-208ENST00000612946 ESF1Q9H501 851 aaKnown RBP10.87□□□□□ -0.67
TTC28-208ENST00000612946 CCDC191Q8NCU4 936 aa10.87□□□□□ -0.67
TTC28-208ENST00000612946 SETD5Q9C0A6 1442 aa10.86□□□□□ -0.67
TTC28-208ENST00000612946 HSP90B2PQ58FF3 399 aa10.86□□□□□ -0.67
TTC28-208ENST00000612946 ERCC4Q92889 916 aaPredicted RBP10.86□□□□□ -0.67
TTC28-208ENST00000612946 NGEFQ8N5V2 710 aa10.85□□□□□ -0.67
TTC28-208ENST00000612946 TPM1P09493 284 aa10.85□□□□□ -0.67
TTC28-208ENST00000612946 CCDC173Q0VFZ6 552 aa10.84□□□□□ -0.67
TTC28-208ENST00000612946 VPS8Q8N3P4 1428 aa10.84□□□□□ -0.67
TTC28-208ENST00000612946 DEF6Q9H4E7 631 aa10.84□□□□□ -0.67
TTC28-208ENST00000612946 ARID3AQ99856 593 aa10.84□□□□□ -0.67
TTC28-208ENST00000612946 FBLN2P98095 1184 aa10.83□□□□□ -0.68
TTC28-208ENST00000612946 HMGB1P09429 215 aaKnown RBP10.83□□□□□ -0.68
TTC28-208ENST00000612946 RRP12Q5JTH9 1297 aaKnown RBP10.83□□□□□ -0.68
TTC28-208ENST00000612946 HSP90B1P14625 803 aaKnown RBP10.82□□□□□ -0.68
TTC28-208ENST00000612946 PES1O00541 588 aaKnown RBP10.82□□□□□ -0.68
TTC28-208ENST00000612946 HDAC5Q9UQL6 1122 aa10.82□□□□□ -0.68
TTC28-208ENST00000612946 GOLGA6L19H0YKK7 550 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 PDE4AP27815 886 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 LEKR1Q6ZMV7 388 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 CHMP5Q9NZZ3 219 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 TSPY4P0CV99 314 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 TSPY10P0CW01 314 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 LETM1O95202 739 aaPredicted RBP10.81□□□□□ -0.68
TTC28-208ENST00000612946 NASPP49321 788 aaPredicted RBP10.81□□□□□ -0.68
TTC28-208ENST00000612946 GNL2Q13823 731 aaKnown RBP10.81□□□□□ -0.68
TTC28-208ENST00000612946 GPATCH3Q96I76 525 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 INCENPQ9NQS7 918 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 ARHGAP35Q9NRY4 1499 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 RNF20Q5VTR2 975 aa10.81□□□□□ -0.68
TTC28-208ENST00000612946 WRNQ14191 1432 aaPredicted RBP eCLIP10.8□□□□□ -0.68
TTC28-208ENST00000612946 FAM107BQ9H098 131 aa10.8□□□□□ -0.68
TTC28-208ENST00000612946 NUCB2P80303 420 aa10.8□□□□□ -0.68
TTC28-208ENST00000612946 CGNL1Q0VF96 1302 aa10.8□□□□□ -0.68
TTC28-208ENST00000612946 TSR1Q2NL82 804 aaKnown RBP10.79□□□□□ -0.68
TTC28-208ENST00000612946 DDX49Q9Y6V7 483 aaKnown RBP10.79□□□□□ -0.68
TTC28-208ENST00000612946 STK11IPQ8N1F8 1099 aa10.79□□□□□ -0.68
TTC28-208ENST00000612946 CAGE1Q8TC20 777 aa10.79□□□□□ -0.68
TTC28-208ENST00000612946 PDCL3Q9H2J4 239 aa10.79□□□□□ -0.68
TTC28-208ENST00000612946 FRAT1Q92837 279 aaPredicted RBP10.78□□□□□ -0.68
TTC28-208ENST00000612946 CARD11Q9BXL7 1154 aa10.78□□□□□ -0.68
TTC28-208ENST00000612946 MBD3O95983 291 aa10.78□□□□□ -0.68
TTC28-208ENST00000612946 PABPN1Q86U42 306 aaKnown RBP eCLIP10.78□□□□□ -0.68
TTC28-208ENST00000612946 CALCOCO1Q9P1Z2 691 aa10.78□□□□□ -0.68
TTC28-208ENST00000612946 ZRSR2Q15696 482 aaKnown RBP10.77□□□□□ -0.68
TTC28-208ENST00000612946 PLPPR3Q6T4P5 718 aa10.77□□□□□ -0.68
TTC28-208ENST00000612946 RUFY1Q96T51 708 aa10.77□□□□□ -0.68
TTC28-208ENST00000612946 KIF15Q9NS87 1388 aa10.77□□□□□ -0.69
TTC28-208ENST00000612946 NEFHP12036 1026 aa10.77□□□□□ -0.69
TTC28-208ENST00000612946 KIF27Q86VH2 1401 aa10.77□□□□□ -0.69
TTC28-208ENST00000612946 PDE4CQ08493 712 aa10.77□□□□□ -0.69
TTC28-208ENST00000612946 STAG3Q9UJ98 1225 aa10.76□□□□□ -0.69
TTC28-208ENST00000612946 TMF1P82094 1093 aa10.76□□□□□ -0.69
TTC28-208ENST00000612946 H0YHG0 523 aa10.76□□□□□ -0.69
TTC28-208ENST00000612946 GOLGA6L7A0A1B0GV03 622 aa10.76□□□□□ -0.69
TTC28-208ENST00000612946 KIF7Q2M1P5 1343 aa10.76□□□□□ -0.69
TTC28-208ENST00000612946 IPO7O95373 1038 aaKnown RBP10.75□□□□□ -0.69
TTC28-208ENST00000612946 HOOK1Q9UJC3 728 aaKnown RBP10.75□□□□□ -0.69
TTC28-208ENST00000612946 OS9Q13438 667 aaPredicted RBP10.75□□□□□ -0.69
TTC28-208ENST00000612946 ZNF777Q9ULD5 760 aaPredicted RBP10.75□□□□□ -0.69
TTC28-208ENST00000612946 NAT10Q9H0A0 1025 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms