RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 MAPKBP1O60336 1514 aa11.59□□□□□ -0.55
LIG4-204ENST00000611712 HNRNPMP52272 730 aaKnown RBP eCLIP11.59□□□□□ -0.55
LIG4-204ENST00000611712 WDR43Q15061 677 aaKnown RBP eCLIP11.59□□□□□ -0.55
LIG4-204ENST00000611712 ERICH6BQ5W0A0 696 aa11.58□□□□□ -0.56
LIG4-204ENST00000611712 CANXP27824 592 aaKnown RBP11.57□□□□□ -0.56
LIG4-204ENST00000611712 NBR1Q14596 966 aa11.57□□□□□ -0.56
LIG4-204ENST00000611712 EHBP1L1Q8N3D4 1523 aa11.57□□□□□ -0.56
LIG4-204ENST00000611712 CC2D1BQ5T0F9 858 aaKnown RBP11.57□□□□□ -0.56
LIG4-204ENST00000611712 ZBTB47Q9UFB7 747 aaPredicted RBP11.57□□□□□ -0.56
LIG4-204ENST00000611712 CCDC7Q96M83 1385 aa11.56□□□□□ -0.56
LIG4-204ENST00000611712 GRIN2BQ13224 1484 aa11.55□□□□□ -0.56
LIG4-204ENST00000611712 KIF7Q2M1P5 1343 aa11.55□□□□□ -0.56
LIG4-204ENST00000611712 CUL7Q14999 1698 aa11.54□□□□□ -0.56
LIG4-204ENST00000611712 NBPF8Q3BBV2 869 aa11.53□□□□□ -0.56
LIG4-204ENST00000611712 URB2Q14146 1524 aaKnown RBP11.53□□□□□ -0.56
LIG4-204ENST00000611712 ST20-MTHFSA0A0A6YYL1 179 aa11.53□□□□□ -0.56
LIG4-204ENST00000611712 KNSTRNQ9Y448 316 aa11.53□□□□□ -0.56
LIG4-204ENST00000611712 ROCK2O75116 1388 aaKnown RBP11.53□□□□□ -0.56
LIG4-204ENST00000611712 USP47Q96K76 1375 aa11.53□□□□□ -0.56
LIG4-204ENST00000611712 MIA2Q96PC5 1412 aa11.53□□□□□ -0.56
LIG4-204ENST00000611712 CNTLNQ9NXG0 1405 aa11.53□□□□□ -0.56
LIG4-204ENST00000611712 ZBED9Q6R2W3 1325 aa11.52□□□□□ -0.57
LIG4-204ENST00000611712 PTPRKQ15262 1439 aa11.52□□□□□ -0.57
LIG4-204ENST00000611712 SUPT6HQ7KZ85 1726 aaKnown RBP11.52□□□□□ -0.57
LIG4-204ENST00000611712 NUDCQ9Y266 331 aa11.51□□□□□ -0.57
LIG4-204ENST00000611712 TMF1P82094 1093 aa11.51□□□□□ -0.57
LIG4-204ENST00000611712 EPRSP07814 1512 aaKnown RBP11.51□□□□□ -0.57
LIG4-204ENST00000611712 CDK13Q14004 1512 aaKnown RBP11.5□□□□□ -0.57
LIG4-204ENST00000611712 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.5□□□□□ -0.57
LIG4-204ENST00000611712 PRDM2Q13029 1718 aa11.5□□□□□ -0.57
LIG4-204ENST00000611712 LAMC3Q9Y6N6 1575 aa11.5□□□□□ -0.57
LIG4-204ENST00000611712 RALBP1Q15311 655 aa11.5□□□□□ -0.57
LIG4-204ENST00000611712 CCDC184Q52MB2 194 aa11.5□□□□□ -0.57
LIG4-204ENST00000611712 NPM1P06748 294 aaKnown RBP eCLIP11.49□□□□□ -0.57
LIG4-204ENST00000611712 CDCA8Q53HL2 280 aa11.49□□□□□ -0.57
LIG4-204ENST00000611712 KTN1Q86UP2 1357 aaKnown RBP11.49□□□□□ -0.57
LIG4-204ENST00000611712 HECW1Q76N89 1606 aa11.48□□□□□ -0.57
LIG4-204ENST00000611712 RSPH4AQ5TD94 716 aa11.47□□□□□ -0.57
LIG4-204ENST00000611712 PTPN23Q9H3S7 1636 aa11.47□□□□□ -0.57
LIG4-204ENST00000611712 PRG4Q92954 1404 aaPredicted RBP11.47□□□□□ -0.57
LIG4-204ENST00000611712 ANKRD50Q9ULJ7 1429 aa11.47□□□□□ -0.57
LIG4-204ENST00000611712 MRC2Q9UBG0 1479 aa11.46□□□□□ -0.57
LIG4-204ENST00000611712 DAPK1P53355 1430 aa11.46□□□□□ -0.57
LIG4-204ENST00000611712 C11orf95C9JLR9 678 aaPredicted RBP11.46□□□□□ -0.57
LIG4-204ENST00000611712 NOP58Q9Y2X3 529 aaKnown RBP11.46□□□□□ -0.58
LIG4-204ENST00000611712 NLRP13Q86W25 1043 aa11.45□□□□□ -0.58
LIG4-204ENST00000611712 RCAN3Q9UKA8 241 aa11.45□□□□□ -0.58
LIG4-204ENST00000611712 PTPRGP23470 1445 aa11.45□□□□□ -0.58
LIG4-204ENST00000611712 KIF15Q9NS87 1388 aa11.45□□□□□ -0.58
LIG4-204ENST00000611712 IQGAP2Q13576 1575 aa11.45□□□□□ -0.58
LIG4-204ENST00000611712 EFCAB2Q5VUJ9 269 aa11.44□□□□□ -0.58
LIG4-204ENST00000611712 MYBBP1AQ9BQG0 1328 aaKnown RBP11.43□□□□□ -0.58
LIG4-204ENST00000611712 IFT140Q96RY7 1462 aa11.43□□□□□ -0.58
LIG4-204ENST00000611712 CCDC144AA2RUR9 1427 aa11.43□□□□□ -0.58
LIG4-204ENST00000611712 TROQ12816 1431 aaPredicted RBP11.43□□□□□ -0.58
LIG4-204ENST00000611712 SNAPC4Q5SXM2 1469 aa11.43□□□□□ -0.58
LIG4-204ENST00000611712 ANKRD30BQ9BXX2 1392 aa11.43□□□□□ -0.58
LIG4-204ENST00000611712 SENP3Q9H4L4 574 aaPredicted RBP11.42□□□□□ -0.58
LIG4-204ENST00000611712 CFAP43Q8NDM7 1665 aa11.42□□□□□ -0.58
LIG4-204ENST00000611712 ROCK1Q13464 1354 aa11.42□□□□□ -0.58
LIG4-204ENST00000611712 KIAA0586Q9BVV6 1533 aa11.42□□□□□ -0.58
LIG4-204ENST00000611712 ABCC5O15440 1437 aa11.41□□□□□ -0.58
LIG4-204ENST00000611712 KIAA1107Q9UPP5 1409 aa11.41□□□□□ -0.58
LIG4-204ENST00000611712 ARID4BQ4LE39 1312 aaPredicted RBP11.4□□□□□ -0.59
LIG4-204ENST00000611712 PANK3Q9H999 370 aa11.39□□□□□ -0.59
LIG4-204ENST00000611712 NEFMP07197 916 aa11.39□□□□□ -0.59
LIG4-204ENST00000611712 NEUROD2Q15784 382 aa11.39□□□□□ -0.59
LIG4-204ENST00000611712 UGGT2Q9NYU1 1516 aa11.38□□□□□ -0.59
LIG4-204ENST00000611712 TNNT2P45379 298 aaPredicted RBP11.38□□□□□ -0.59
LIG4-204ENST00000611712 PDE3BQ13370 1112 aa11.37□□□□□ -0.59
LIG4-204ENST00000611712 STAG3Q9UJ98 1225 aa11.37□□□□□ -0.59
LIG4-204ENST00000611712 FANCIQ9NVI1 1328 aa11.37□□□□□ -0.59
LIG4-204ENST00000611712 CTTNBP2Q8WZ74 1663 aa11.37□□□□□ -0.59
LIG4-204ENST00000611712 KANK1Q14678 1352 aa11.37□□□□□ -0.59
LIG4-204ENST00000611712 ZNF608Q9ULD9 1512 aaPredicted RBP11.36□□□□□ -0.59
LIG4-204ENST00000611712 BCL11AQ9H165 835 aa11.36□□□□□ -0.59
LIG4-204ENST00000611712 SPAG9O60271 1321 aaKnown RBP11.36□□□□□ -0.59
LIG4-204ENST00000611712 C9orf84Q5VXU9 1444 aa11.36□□□□□ -0.59
LIG4-204ENST00000611712 THOC2Q8NI27 1593 aaKnown RBP11.36□□□□□ -0.59
LIG4-204ENST00000611712 RGS3P49796 1198 aa11.35□□□□□ -0.59
LIG4-204ENST00000611712 LAS1LQ9Y4W2 734 aaKnown RBP11.35□□□□□ -0.59
LIG4-204ENST00000611712 PLB1Q6P1J6 1458 aa11.35□□□□□ -0.59
LIG4-204ENST00000611712 AKNAQ7Z591 1439 aa11.35□□□□□ -0.59
LIG4-204ENST00000611712 KIF3BO15066 747 aa11.35□□□□□ -0.59
LIG4-204ENST00000611712 NCOA1Q15788 1441 aa11.35□□□□□ -0.59
LIG4-204ENST00000611712 RPRD2Q5VT52 1461 aaKnown RBP11.35□□□□□ -0.59
LIG4-204ENST00000611712 EXOC6Q8TAG9 804 aa11.35□□□□□ -0.59
LIG4-204ENST00000611712 DDRGK1Q96HY6 314 aa11.35□□□□□ -0.59
LIG4-204ENST00000611712 RRP1P56182 461 aaKnown RBP11.34□□□□□ -0.59
LIG4-204ENST00000611712 NBPF1Q3BBV0 1214 aa11.34□□□□□ -0.59
LIG4-204ENST00000611712 PNISRQ8TF01 805 aaKnown RBP11.34□□□□□ -0.59
LIG4-204ENST00000611712 UPF2Q9HAU5 1272 aaKnown RBP11.34□□□□□ -0.59
LIG4-204ENST00000611712 TCERG1O14776 1098 aaKnown RBP11.33□□□□□ -0.6
LIG4-204ENST00000611712 SLC24A1O60721 1099 aa11.33□□□□□ -0.6
LIG4-204ENST00000611712 PLIN1O60240 522 aa11.33□□□□□ -0.6
LIG4-204ENST00000611712 CFAP53Q96M91 514 aa11.33□□□□□ -0.6
LIG4-204ENST00000611712 CAMSAP2Q08AD1 1489 aa11.32□□□□□ -0.6
LIG4-204ENST00000611712 GRIN2AQ12879 1464 aa11.32□□□□□ -0.6
LIG4-204ENST00000611712 FRAT1Q92837 279 aaPredicted RBP11.32□□□□□ -0.6
LIG4-204ENST00000611712 IPO9Q96P70 1041 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms