RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 MKRN3Q13064 507 aaKnown RBP10.26□□□□□ -0.77
SMAD4-208ENST00000589706 CAMK2BQ13554 666 aa10.25□□□□□ -0.77
SMAD4-208ENST00000589706 NEUROD2Q15784 382 aa10.25□□□□□ -0.77
SMAD4-208ENST00000589706 ZMYND10O75800 440 aa10.24□□□□□ -0.77
SMAD4-208ENST00000589706 TRPC6Q9Y210 931 aa10.23□□□□□ -0.77
SMAD4-208ENST00000589706 MS4A3Q96HJ5 214 aa10.22□□□□□ -0.77
SMAD4-208ENST00000589706 C14orf37Q86TY3 774 aa10.2□□□□□ -0.78
SMAD4-208ENST00000589706 DCAF1Q9Y4B6 1507 aa10.2□□□□□ -0.78
SMAD4-208ENST00000589706 BARGINQ6ZT62 677 aa10.18□□□□□ -0.78
SMAD4-208ENST00000589706 TIE1P35590 1138 aa10.17□□□□□ -0.78
SMAD4-208ENST00000589706 PPP1R15BQ5SWA1 713 aa10.17□□□□□ -0.78
SMAD4-208ENST00000589706 ILDR1Q86SU0 546 aaPredicted RBP10.16□□□□□ -0.78
SMAD4-208ENST00000589706 GPHNQ9NQX3 736 aaPredicted RBP10.16□□□□□ -0.78
SMAD4-208ENST00000589706 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.16□□□□□ -0.787e-8■■□□□ 11.5
SMAD4-208ENST00000589706 ZCCHC6Q5VYS8 1495 aaKnown RBP10.15□□□□□ -0.78
SMAD4-208ENST00000589706 TTLL13PA6NNM8 815 aa10.14□□□□□ -0.79
SMAD4-208ENST00000589706 MLLT3P42568 568 aaPredicted RBP10.14□□□□□ -0.79
SMAD4-208ENST00000589706 NESP48681 1621 aa10.14□□□□□ -0.79
SMAD4-208ENST00000589706 C19orf67A6NJJ6 358 aa10.13□□□□□ -0.79
SMAD4-208ENST00000589706 RBM26Q5T8P6 1007 aaKnown RBP10.13□□□□□ -0.79
SMAD4-208ENST00000589706 GPIHBP1Q8IV16 184 aa10.12□□□□□ -0.79
SMAD4-208ENST00000589706 THOC2Q8NI27 1593 aaKnown RBP10.1□□□□□ -0.79
SMAD4-208ENST00000589706 AK7Q96M32 723 aa10.1□□□□□ -0.79
SMAD4-208ENST00000589706 BMP2KQ9NSY1 1161 aaPredicted RBP10.1□□□□□ -0.79
SMAD4-208ENST00000589706 NCAPD3P42695 1498 aa10.1□□□□□ -0.79
SMAD4-208ENST00000589706 SPDYE16A6NNV3 312 aaPredicted RBP10.09□□□□□ -0.79
SMAD4-208ENST00000589706 DPYSL4O14531 572 aa10.09□□□□□ -0.79
SMAD4-208ENST00000589706 KRI1Q8N9T8 703 aaKnown RBP10.08□□□□□ -0.8
SMAD4-208ENST00000589706 EMILIN3Q9NT22 766 aa10.08□□□□□ -0.8
SMAD4-208ENST00000589706 TRIM35Q9UPQ4 493 aa10.08□□□□□ -0.8
SMAD4-208ENST00000589706 DSG2Q14126 1118 aa10.07□□□□□ -0.8
SMAD4-208ENST00000589706 DPY19L2Q6NUT2 758 aa10.07□□□□□ -0.8
SMAD4-208ENST00000589706 PELP1Q8IZL8 1130 aaKnown RBP10.07□□□□□ -0.8
SMAD4-208ENST00000589706 ARXQ96QS3 562 aa10.07□□□□□ -0.8
SMAD4-208ENST00000589706 PDIA6Q15084 440 aa10.06□□□□□ -0.8
SMAD4-208ENST00000589706 MICALL2Q8IY33 904 aa10.06□□□□□ -0.8
SMAD4-208ENST00000589706 TMC2Q8TDI7 906 aa10.05□□□□□ -0.8
SMAD4-208ENST00000589706 FOXK1P85037 733 aa10.04□□□□□ -0.8
SMAD4-208ENST00000589706 DAXXQ9UER7 740 aaPredicted RBP10.03□□□□□ -0.8
SMAD4-208ENST00000589706 GPBP1L1Q9HC44 474 aaPredicted RBP10.02□□□□□ -0.81
SMAD4-208ENST00000589706 GALR2O43603 387 aaPredicted RBP10.01□□□□□ -0.81
SMAD4-208ENST00000589706 SMARCA2P51531 1590 aa10.01□□□□□ -0.81
SMAD4-208ENST00000589706 TRIM66O15016 1216 aa10□□□□□ -0.81
SMAD4-208ENST00000589706 PDCD7Q8N8D1 485 aaKnown RBP10□□□□□ -0.81
SMAD4-208ENST00000589706 MYT1Q01538 1121 aa9.99□□□□□ -0.81
SMAD4-208ENST00000589706 PLPP6Q8IY26 295 aa9.99□□□□□ -0.81
SMAD4-208ENST00000589706 KDM4CQ9H3R0 1056 aa9.98□□□□□ -0.81
SMAD4-208ENST00000589706 ATAD2BQ9ULI0 1458 aa9.98□□□□□ -0.81
SMAD4-208ENST00000589706 BAZ1AQ9NRL2 1556 aaPredicted RBP9.97□□□□□ -0.81
SMAD4-208ENST00000589706 C2orf72A6NCS6 295 aa9.96□□□□□ -0.82
SMAD4-208ENST00000589706 CLCN6P51797 869 aa9.96□□□□□ -0.82
SMAD4-208ENST00000589706 PDE4DQ08499 809 aa9.96□□□□□ -0.82
SMAD4-208ENST00000589706 IL27Q8NEV9 243 aa9.96□□□□□ -0.82
SMAD4-208ENST00000589706 TMEM121BQ9BXQ6 578 aaPredicted RBP9.96□□□□□ -0.82
SMAD4-208ENST00000589706 BOLA1Q9Y3E2 137 aa9.96□□□□□ -0.82
SMAD4-208ENST00000589706 KIF3CO14782 793 aa9.95□□□□□ -0.82
SMAD4-208ENST00000589706 GPR37O15354 613 aa9.95□□□□□ -0.82
SMAD4-208ENST00000589706 ATN1P54259 1190 aaPredicted RBP9.95□□□□□ -0.82
SMAD4-208ENST00000589706 IRX5P78411 483 aaPredicted RBP9.95□□□□□ -0.82
SMAD4-208ENST00000589706 MAP3K9P80192 1104 aa9.95□□□□□ -0.82
SMAD4-208ENST00000589706 OCEL1Q9H607 264 aa9.95□□□□□ -0.82
SMAD4-208ENST00000589706 KIF21AQ7Z4S6 1674 aa9.95□□□□□ -0.82
SMAD4-208ENST00000589706 G3V3G9 751 aa9.94□□□□□ -0.82
SMAD4-208ENST00000589706 LAMC3Q9Y6N6 1575 aa9.93□□□□□ -0.82
SMAD4-208ENST00000589706 GRXCR2A6NFK2 248 aa9.93□□□□□ -0.82
SMAD4-208ENST00000589706 HMGXB3Q12766 1538 aa9.92□□□□□ -0.82
SMAD4-208ENST00000589706 PDS5BQ9NTI5 1447 aa9.92□□□□□ -0.82
SMAD4-208ENST00000589706 IER5LQ5T953 404 aa9.92□□□□□ -0.82
SMAD4-208ENST00000589706 MINK1Q8N4C8 1332 aaPredicted RBP9.91□□□□□ -0.82
SMAD4-208ENST00000589706 HOMEZQ8IX15 550 aa9.91□□□□□ -0.82
SMAD4-208ENST00000589706 RIMBP3CA6NJZ7 1639 aa9.9□□□□□ -0.82
SMAD4-208ENST00000589706 RIMBP3BA6NNM3 1639 aa9.9□□□□□ -0.82
SMAD4-208ENST00000589706 RIMBP3Q9UFD9 1639 aa9.9□□□□□ -0.82
SMAD4-208ENST00000589706 NUTM2FA1L443 756 aa9.9□□□□□ -0.82
SMAD4-208ENST00000589706 SUPT5HO00267 1087 aaKnown RBP9.9□□□□□ -0.82
SMAD4-208ENST00000589706 ATMINO43313 823 aaPredicted RBP9.9□□□□□ -0.82
SMAD4-208ENST00000589706 ASTLQ6HA08 431 aaPredicted RBP9.89□□□□□ -0.83
SMAD4-208ENST00000589706 HAX1O00165 279 aa9.87□□□□□ -0.83
SMAD4-208ENST00000589706 OSBPP22059 807 aa9.87□□□□□ -0.83
SMAD4-208ENST00000589706 MAP2K5Q13163 448 aa9.87□□□□□ -0.83
SMAD4-208ENST00000589706 UPF1Q92900 1129 aaKnown RBP eCLIP9.87□□□□□ -0.83
SMAD4-208ENST00000589706 L3MBTL3Q96JM7 780 aaPredicted RBP9.87□□□□□ -0.83
SMAD4-208ENST00000589706 PLCG2P16885 1265 aa9.86□□□□□ -0.83
SMAD4-208ENST00000589706 PTGER2P43116 358 aa9.86□□□□□ -0.83
SMAD4-208ENST00000589706 CCDC102AQ96A19 550 aa9.86□□□□□ -0.83
SMAD4-208ENST00000589706 MRC2Q9UBG0 1479 aa9.85□□□□□ -0.83
SMAD4-208ENST00000589706 IRF6O14896 467 aa9.85□□□□□ -0.83
SMAD4-208ENST00000589706 OXER1Q8TDS5 423 aa9.85□□□□□ -0.83
SMAD4-208ENST00000589706 WDR62O43379 1518 aa9.84□□□□□ -0.83
SMAD4-208ENST00000589706 GNPATO15228 680 aa9.84□□□□□ -0.83
SMAD4-208ENST00000589706 EVX2Q03828 476 aa9.84□□□□□ -0.83
SMAD4-208ENST00000589706 CYB5RLQ6IPT4 315 aa9.84□□□□□ -0.83
SMAD4-208ENST00000589706 FAM117AQ9C073 453 aa9.84□□□□□ -0.83
SMAD4-208ENST00000589706 BAZ1BQ9UIG0 1483 aaKnown RBP9.84□□□□□ -0.83
SMAD4-208ENST00000589706 TBC1D12O60347 775 aa9.83□□□□□ -0.84
SMAD4-208ENST00000589706 FCHSD2O94868 740 aa9.83□□□□□ -0.84
SMAD4-208ENST00000589706 HIC1Q14526 733 aa9.83□□□□□ -0.84
SMAD4-208ENST00000589706 TMEM92Q6UXU6 159 aa9.83□□□□□ -0.84
SMAD4-208ENST00000589706 AMHR2Q16671 573 aa9.82□□□□□ -0.84
SMAD4-208ENST00000589706 DDX12PQ92771 950 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms