RNA–Protein interactions for RNA: ENST00000584550.1

GGA3-219, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5

Gene GGA3, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-219ENST00000584550 TTC37Q6PGP7 1564 aa17.27■□□□□ 0.35
GGA3-219ENST00000584550 CSRNP3Q8WYN3 585 aa17.25■□□□□ 0.35
GGA3-219ENST00000584550 SCAPERQ9BY12 1400 aa17.23■□□□□ 0.35
GGA3-219ENST00000584550 MAGI2Q86UL8 1455 aa17.23■□□□□ 0.35
GGA3-219ENST00000584550 PREX1Q8TCU6 1659 aa17.23■□□□□ 0.35
GGA3-219ENST00000584550 STRCQ7RTU9 1775 aa17.22■□□□□ 0.35
GGA3-219ENST00000584550 DMRT2Q9Y5R5 561 aa17.21■□□□□ 0.35
GGA3-219ENST00000584550 ATP10AO60312 1499 aa17.19■□□□□ 0.34
GGA3-219ENST00000584550 ARHGEF12Q9NZN5 1544 aa17.19■□□□□ 0.34
GGA3-219ENST00000584550 C9orf84Q5VXU9 1444 aa17.17■□□□□ 0.34
GGA3-219ENST00000584550 CDK13Q14004 1512 aaKnown RBP17.16■□□□□ 0.34
GGA3-219ENST00000584550 SPATA31D1Q6ZQQ2 1576 aa17.16■□□□□ 0.34
GGA3-219ENST00000584550 PLCH2O75038 1416 aa17.16■□□□□ 0.34
GGA3-219ENST00000584550 MYT1LQ9UL68 1186 aa17.16■□□□□ 0.34
GGA3-219ENST00000584550 ATP1B4Q9UN42 357 aaPredicted RBP17.16■□□□□ 0.34
GGA3-219ENST00000584550 UHRF1BP1Q6BDS2 1440 aa17.14■□□□□ 0.33
GGA3-219ENST00000584550 EFCAB2Q5VUJ9 269 aa17.13■□□□□ 0.33
GGA3-219ENST00000584550 AFAP1Q8N556 730 aa17.12■□□□□ 0.33
GGA3-219ENST00000584550 MYO5CQ9NQX4 1742 aa17.09■□□□□ 0.33
GGA3-219ENST00000584550 SETD1BQ9UPS6 1966 aaKnown RBP17.08■□□□□ 0.33
GGA3-219ENST00000584550 EHMT2Q96KQ7 1210 aa17.08■□□□□ 0.32
GGA3-219ENST00000584550 PTPRTO14522 1441 aa17.07■□□□□ 0.32
GGA3-219ENST00000584550 ESF1Q9H501 851 aaKnown RBP17.06■□□□□ 0.32
GGA3-219ENST00000584550 C3P01024 1663 aa17.06■□□□□ 0.32
GGA3-219ENST00000584550 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
GGA3-219ENST00000584550 LTBP4Q8N2S1 1624 aa17.05■□□□□ 0.32
GGA3-219ENST00000584550 KIF14Q15058 1648 aa17.04■□□□□ 0.32
GGA3-219ENST00000584550 ARHGAP5Q13017 1502 aa17.04■□□□□ 0.32
GGA3-219ENST00000584550 DIP2CQ9Y2E4 1556 aa17.02■□□□□ 0.32
GGA3-219ENST00000584550 CDK11AQ9UQ88 783 aaPredicted RBP17.01■□□□□ 0.31
GGA3-219ENST00000584550 KDM5CP41229 1560 aa17.01■□□□□ 0.31
GGA3-219ENST00000584550 TRAPPC8Q9Y2L5 1435 aa17■□□□□ 0.31
GGA3-219ENST00000584550 ABCA6Q8N139 1617 aa16.99■□□□□ 0.31
GGA3-219ENST00000584550 EEA1Q15075 1411 aa16.98■□□□□ 0.31
GGA3-219ENST00000584550 UBAP1LF5GYI3 381 aa16.98■□□□□ 0.31
GGA3-219ENST00000584550 NCOA1Q15788 1441 aa16.97■□□□□ 0.31
GGA3-219ENST00000584550 NCKAP5LQ9HCH0 1330 aa16.96■□□□□ 0.31
GGA3-219ENST00000584550 ZNF335Q9H4Z2 1342 aaPredicted RBP16.96■□□□□ 0.3
GGA3-219ENST00000584550 REREQ9P2R6 1566 aa16.95■□□□□ 0.3
GGA3-219ENST00000584550 IQSEC2Q5JU85 1478 aa16.95■□□□□ 0.3
GGA3-219ENST00000584550 UBTFP17480 764 aaKnown RBP16.95■□□□□ 0.3
GGA3-219ENST00000584550 CDC42BPBQ9Y5S2 1711 aa16.95■□□□□ 0.3
GGA3-219ENST00000584550 CAMSAP1Q5T5Y3 1602 aa16.95■□□□□ 0.3
GGA3-219ENST00000584550 TROQ12816 1431 aaPredicted RBP16.95■□□□□ 0.3
GGA3-219ENST00000584550 MLH3Q9UHC1 1453 aa16.94■□□□□ 0.3
GGA3-219ENST00000584550 FMN1Q68DA7 1419 aa16.94■□□□□ 0.3
GGA3-219ENST00000584550 CLIP1P30622 1438 aa16.93■□□□□ 0.3
GGA3-219ENST00000584550 AGLP35573 1532 aa16.91■□□□□ 0.3
GGA3-219ENST00000584550 LRRIQ1Q96JM4 1722 aa16.9■□□□□ 0.3
GGA3-219ENST00000584550 CNTLNQ9NXG0 1405 aa16.89■□□□□ 0.29
GGA3-219ENST00000584550 ARHGAP35Q9NRY4 1499 aa16.89■□□□□ 0.29
GGA3-219ENST00000584550 KIDINS220Q9ULH0 1771 aa16.89■□□□□ 0.29
GGA3-219ENST00000584550 ZMYM3Q14202 1370 aa16.89■□□□□ 0.29
GGA3-219ENST00000584550 ITSN2Q9NZM3 1697 aa16.88■□□□□ 0.29
GGA3-219ENST00000584550 ABCC1P33527 1531 aa16.88■□□□□ 0.29
GGA3-219ENST00000584550 SCAF1Q9H7N4 1312 aaKnown RBP16.88■□□□□ 0.29
GGA3-219ENST00000584550 ZNF777Q9ULD5 760 aaPredicted RBP16.87■□□□□ 0.29
GGA3-219ENST00000584550 PREX2Q70Z35 1606 aa16.85■□□□□ 0.29
GGA3-219ENST00000584550 NPATQ14207 1427 aa16.85■□□□□ 0.29
GGA3-219ENST00000584550 SUPT6HQ7KZ85 1726 aaKnown RBP16.84■□□□□ 0.29
GGA3-219ENST00000584550 PIP4K2BP78356 416 aa16.84■□□□□ 0.29
GGA3-219ENST00000584550 MROH2AA6NES4 1674 aa16.83■□□□□ 0.28
GGA3-219ENST00000584550 HSPA1LP34931 641 aa16.83■□□□□ 0.28
GGA3-219ENST00000584550 CLTCQ00610 1675 aaKnown RBP16.83■□□□□ 0.28
GGA3-219ENST00000584550 PKD2Q13563 968 aa16.82■□□□□ 0.28
GGA3-219ENST00000584550 HNRNPMP52272 730 aaKnown RBP eCLIP16.81■□□□□ 0.28
GGA3-219ENST00000584550 MYO3AQ8NEV4 1616 aa16.81■□□□□ 0.28
GGA3-219ENST00000584550 SPAG9O60271 1321 aaKnown RBP16.8■□□□□ 0.28
GGA3-219ENST00000584550 CDC42BPAQ5VT25 1732 aa16.8■□□□□ 0.28
GGA3-219ENST00000584550 GGT6Q6P531 493 aa16.8■□□□□ 0.28
GGA3-219ENST00000584550 PPP6R1Q9UPN7 881 aa16.8■□□□□ 0.28
GGA3-219ENST00000584550 SAMD9LQ8IVG5 1584 aa16.8■□□□□ 0.28
GGA3-219ENST00000584550 CEP170BQ9Y4F5 1589 aaPredicted RBP16.78■□□□□ 0.28
GGA3-219ENST00000584550 MED1Q15648 1581 aaPredicted RBP16.77■□□□□ 0.28
GGA3-219ENST00000584550 PLA2R1Q13018 1463 aa16.77■□□□□ 0.28
GGA3-219ENST00000584550 TCOF1Q13428 1488 aaKnown RBP16.77■□□□□ 0.28
GGA3-219ENST00000584550 ZNF142P52746 1687 aaPredicted RBP16.77■□□□□ 0.28
GGA3-219ENST00000584550 PTPRKQ15262 1439 aa16.77■□□□□ 0.27
GGA3-219ENST00000584550 SYCP2Q9BX26 1530 aa16.76■□□□□ 0.27
GGA3-219ENST00000584550 TOM1O60784 492 aa16.74■□□□□ 0.27
GGA3-219ENST00000584550 SENP3Q9H4L4 574 aaPredicted RBP16.74■□□□□ 0.27
GGA3-219ENST00000584550 PHF23Q9BUL5 403 aaPredicted RBP16.73■□□□□ 0.27
GGA3-219ENST00000584550 CCDC18Q5T9S5 1454 aa16.73■□□□□ 0.27
GGA3-219ENST00000584550 ATP7AQ04656 1500 aa16.72■□□□□ 0.27
GGA3-219ENST00000584550 A2MP01023 1474 aa16.72■□□□□ 0.27
GGA3-219ENST00000584550 CASKIN1Q8WXD9 1431 aa16.71■□□□□ 0.27
GGA3-219ENST00000584550 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
GGA3-219ENST00000584550 DNMT1P26358 1616 aaKnown RBP16.7■□□□□ 0.26
GGA3-219ENST00000584550 GPATCH8Q9UKJ3 1502 aaKnown RBP16.7■□□□□ 0.26
GGA3-219ENST00000584550 PLXNC1O60486 1568 aa16.69■□□□□ 0.26
GGA3-219ENST00000584550 CFDP1Q9UEE9 299 aaPredicted RBP16.69■□□□□ 0.26
GGA3-219ENST00000584550 INO80Q9ULG1 1556 aaPredicted RBP16.68■□□□□ 0.26
GGA3-219ENST00000584550 A2ML1A8K2U0 1454 aa16.67■□□□□ 0.26
GGA3-219ENST00000584550 FBXO31Q5XUX0 539 aaPredicted RBP16.67■□□□□ 0.26
GGA3-219ENST00000584550 SHANK2Q9UPX8 1470 aa16.67■□□□□ 0.26
GGA3-219ENST00000584550 CPS1P31327 1500 aa16.65■□□□□ 0.26
GGA3-219ENST00000584550 POLR1AO95602 1720 aaPredicted RBP16.65■□□□□ 0.26
GGA3-219ENST00000584550 NEURL4Q96JN8 1562 aa16.64■□□□□ 0.25
GGA3-219ENST00000584550 KIAA1107Q9UPP5 1409 aa16.63■□□□□ 0.25
GGA3-219ENST00000584550 ZNF644Q9H582 1327 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms