RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 CLASP1Q7Z460 1538 aa27.79■■■□□ 2.04
SMPD3-203ENST00000563226 PLEKHD1A6NEE1 506 aa27.79■■■□□ 2.04
SMPD3-203ENST00000563226 CDC42BPAQ5VT25 1732 aa27.79■■■□□ 2.04
SMPD3-203ENST00000563226 CFDP1Q9UEE9 299 aaPredicted RBP27.78■■■□□ 2.04
SMPD3-203ENST00000563226 ABCC10Q5T3U5 1492 aa27.78■■■□□ 2.04
SMPD3-203ENST00000563226 ROCK1Q13464 1354 aa27.74■■■□□ 2.03
SMPD3-203ENST00000563226 DENND4BO75064 1496 aaPredicted RBP27.71■■■□□ 2.03
SMPD3-203ENST00000563226 ZNF777Q9ULD5 760 aaPredicted RBP27.71■■■□□ 2.03
SMPD3-203ENST00000563226 CROCC2H7BZ55 1655 aa27.7■■■□□ 2.02
SMPD3-203ENST00000563226 ADGBQ8N7X0 1667 aa27.67■■■□□ 2.02
SMPD3-203ENST00000563226 ABCC2Q92887 1545 aa27.66■■■□□ 2.02
SMPD3-203ENST00000563226 TRIM52Q96A61 297 aa27.66■■■□□ 2.02
SMPD3-203ENST00000563226 TIMELESSQ9UNS1 1208 aa27.66■■■□□ 2.02
SMPD3-203ENST00000563226 MIER1Q8N108 512 aa27.59■■■□□ 2.01
SMPD3-203ENST00000563226 PPP1R15AO75807 674 aaPredicted RBP27.58■■■□□ 2.01
SMPD3-203ENST00000563226 NCOA1Q15788 1441 aa27.58■■■□□ 2.01
SMPD3-203ENST00000563226 ADGRL2O95490 1459 aa27.58■■■□□ 2.01
SMPD3-203ENST00000563226 CDC42BPBQ9Y5S2 1711 aa27.58■■■□□ 2.01
SMPD3-203ENST00000563226 TONSLQ96HA7 1378 aa27.57■■■□□ 2
SMPD3-203ENST00000563226 MPHOSPH9Q99550 1183 aa27.57■■■□□ 2
SMPD3-203ENST00000563226 PREX2Q70Z35 1606 aa27.57■■■□□ 2
SMPD3-203ENST00000563226 TTC37Q6PGP7 1564 aa27.55■■■□□ 2
SMPD3-203ENST00000563226 ZCCHC11Q5TAX3 1644 aaKnown RBP27.52■■■□□ 2
SMPD3-203ENST00000563226 SAMD9LQ8IVG5 1584 aa27.52■■■□□ 2
SMPD3-203ENST00000563226 KDM5BQ9UGL1 1544 aa27.52■■■□□ 2
SMPD3-203ENST00000563226 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.51■■□□□ 1.99
SMPD3-203ENST00000563226 SHANK2Q9UPX8 1470 aa27.5■■□□□ 1.99
SMPD3-203ENST00000563226 FOXD1Q16676 465 aa27.49■■□□□ 1.99
SMPD3-203ENST00000563226 UHRF1BP1LA0JNW5 1464 aa27.48■■□□□ 1.99
SMPD3-203ENST00000563226 ANKRD30AQ9BXX3 1397 aa27.48■■□□□ 1.99
SMPD3-203ENST00000563226 C9orf84Q5VXU9 1444 aa27.48■■□□□ 1.99
SMPD3-203ENST00000563226 ARHGEF5Q12774 1597 aa27.47■■□□□ 1.99
SMPD3-203ENST00000563226 MBD5Q9P267 1494 aa27.46■■□□□ 1.99
SMPD3-203ENST00000563226 HNRNPMP52272 730 aaKnown RBP eCLIP27.45■■□□□ 1.99
SMPD3-203ENST00000563226 PZPP20742 1482 aa27.44■■□□□ 1.98
SMPD3-203ENST00000563226 ACIN1Q9UKV3 1341 aaKnown RBP27.43■■□□□ 1.98
SMPD3-203ENST00000563226 MYO5CQ9NQX4 1742 aa27.43■■□□□ 1.98
SMPD3-203ENST00000563226 ARHGAP5Q13017 1502 aa27.41■■□□□ 1.98
SMPD3-203ENST00000563226 ANKRD50Q9ULJ7 1429 aa27.4■■□□□ 1.98
SMPD3-203ENST00000563226 ANKRD30BQ9BXX2 1392 aa27.39■■□□□ 1.98
SMPD3-203ENST00000563226 SLC4A1APQ9BWU0 796 aaKnown RBP27.39■■□□□ 1.98
SMPD3-203ENST00000563226 KCNH8Q96L42 1107 aa27.39■■□□□ 1.97
SMPD3-203ENST00000563226 SYCP2Q9BX26 1530 aa27.38■■□□□ 1.97
SMPD3-203ENST00000563226 CCDC141Q6ZP82 1450 aa27.38■■□□□ 1.97
SMPD3-203ENST00000563226 TSPY4P0CV99 314 aa27.36■■□□□ 1.97
SMPD3-203ENST00000563226 TSPY10P0CW01 314 aa27.36■■□□□ 1.97
SMPD3-203ENST00000563226 HIRIP3Q9BW71 556 aaPredicted RBP27.34■■□□□ 1.97
SMPD3-203ENST00000563226 KIF15Q9NS87 1388 aa27.32■■□□□ 1.96
SMPD3-203ENST00000563226 RPRD2Q5VT52 1461 aaKnown RBP27.32■■□□□ 1.96
SMPD3-203ENST00000563226 L3MBTL2Q969R5 705 aa27.27■■□□□ 1.96
SMPD3-203ENST00000563226 YTHDC1Q96MU7 727 aaKnown RBP27.26■■□□□ 1.95
SMPD3-203ENST00000563226 MAST1Q9Y2H9 1570 aa27.26■■□□□ 1.95
SMPD3-203ENST00000563226 PLCH2O75038 1416 aa27.26■■□□□ 1.95
SMPD3-203ENST00000563226 KIAA1107Q9UPP5 1409 aa27.26■■□□□ 1.95
SMPD3-203ENST00000563226 ARHGEF12Q9NZN5 1544 aa27.25■■□□□ 1.95
SMPD3-203ENST00000563226 TEX14Q8IWB6 1497 aa27.25■■□□□ 1.95
SMPD3-203ENST00000563226 RSPH4AQ5TD94 716 aa27.25■■□□□ 1.95
SMPD3-203ENST00000563226 KDM5DQ9BY66 1539 aa27.23■■□□□ 1.95
SMPD3-203ENST00000563226 PLEKHH2Q8IVE3 1493 aa27.23■■□□□ 1.95
SMPD3-203ENST00000563226 NUP155O75694 1391 aa27.22■■□□□ 1.95
SMPD3-203ENST00000563226 PKD2Q13563 968 aa27.22■■□□□ 1.95
SMPD3-203ENST00000563226 CENPBP07199 599 aaPredicted RBP27.21■■□□□ 1.95
SMPD3-203ENST00000563226 OSCARQ8IYS5 282 aa27.2■■□□□ 1.94
SMPD3-203ENST00000563226 DDX10Q13206 875 aaKnown RBP27.19■■□□□ 1.94
SMPD3-203ENST00000563226 WDR7Q9Y4E6 1490 aa27.18■■□□□ 1.94
SMPD3-203ENST00000563226 ABCC1P33527 1531 aa27.18■■□□□ 1.94
SMPD3-203ENST00000563226 PLXNC1O60486 1568 aa27.16■■□□□ 1.94
SMPD3-203ENST00000563226 SCAF1Q9H7N4 1312 aaKnown RBP27.16■■□□□ 1.94
SMPD3-203ENST00000563226 EFCAB2Q5VUJ9 269 aa27.15■■□□□ 1.94
SMPD3-203ENST00000563226 NBPF8Q3BBV2 869 aa27.12■■□□□ 1.93
SMPD3-203ENST00000563226 ARAP3Q8WWN8 1544 aa27.1■■□□□ 1.93
SMPD3-203ENST00000563226 TRAPPC8Q9Y2L5 1435 aa27.1■■□□□ 1.93
SMPD3-203ENST00000563226 UNC13BO14795 1591 aa27.09■■□□□ 1.93
SMPD3-203ENST00000563226 FAM135AQ9P2D6 1515 aa27.09■■□□□ 1.93
SMPD3-203ENST00000563226 ABCA9Q8IUA7 1624 aa27.09■■□□□ 1.93
SMPD3-203ENST00000563226 HSPA5P11021 654 aaKnown RBP27.07■■□□□ 1.92
SMPD3-203ENST00000563226 ASXL2Q76L83 1435 aa27.07■■□□□ 1.92
SMPD3-203ENST00000563226 DUOX2Q9NRD8 1548 aa27.04■■□□□ 1.92
SMPD3-203ENST00000563226 EIF4G2P78344 907 aaKnown RBP eCLIP27■■□□□ 1.91
SMPD3-203ENST00000563226 FANCAO15360 1455 aa27■■□□□ 1.91
SMPD3-203ENST00000563226 IQGAP3Q86VI3 1631 aa26.99■■□□□ 1.91
SMPD3-203ENST00000563226 ERBINQ96RT1 1412 aa26.98■■□□□ 1.91
SMPD3-203ENST00000563226 ZFYVE16Q7Z3T8 1539 aa26.98■■□□□ 1.91
SMPD3-203ENST00000563226 AFAP1Q8N556 730 aa26.97■■□□□ 1.91
SMPD3-203ENST00000563226 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.96■■□□□ 1.91
SMPD3-203ENST00000563226 MAGI2Q86UL8 1455 aa26.95■■□□□ 1.9
SMPD3-203ENST00000563226 SPAG9O60271 1321 aaKnown RBP26.94■■□□□ 1.9
SMPD3-203ENST00000563226 WASHC2AQ641Q2 1341 aa26.94■■□□□ 1.9
SMPD3-203ENST00000563226 RTEL1-TNFRSF6BF6WH68 1400 aa26.91■■□□□ 1.9
SMPD3-203ENST00000563226 ADGRL1O94910 1474 aa26.9■■□□□ 1.9
SMPD3-203ENST00000563226 INO80Q9ULG1 1556 aaPredicted RBP26.9■■□□□ 1.9
SMPD3-203ENST00000563226 SPATA31E1Q6ZUB1 1445 aa26.9■■□□□ 1.9
SMPD3-203ENST00000563226 NPM1P06748 294 aaKnown RBP eCLIP26.89■■□□□ 1.89
SMPD3-203ENST00000563226 ZNF326Q5BKZ1 582 aaKnown RBP26.89■■□□□ 1.89
SMPD3-203ENST00000563226 PLA2R1Q13018 1463 aa26.89■■□□□ 1.89
SMPD3-203ENST00000563226 ATP7AQ04656 1500 aa26.87■■□□□ 1.89
SMPD3-203ENST00000563226 C11orf95C9JLR9 678 aaPredicted RBP26.86■■□□□ 1.89
SMPD3-203ENST00000563226 UHRF1BP1Q6BDS2 1440 aa26.86■■□□□ 1.89
SMPD3-203ENST00000563226 SCAPERQ9BY12 1400 aa26.86■■□□□ 1.89
SMPD3-203ENST00000563226 GTF3C3Q9Y5Q9 886 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms