RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 KDM6BO15054 1643 aa11.63□□□□□ -0.55
SMAD3-212ENST00000559937 PLB1Q6P1J6 1458 aa11.63□□□□□ -0.55
SMAD3-212ENST00000559937 PPP1R15AO75807 674 aaPredicted RBP11.62□□□□□ -0.55
SMAD3-212ENST00000559937 SIN3AQ96ST3 1273 aa11.62□□□□□ -0.55
SMAD3-212ENST00000559937 TONSLQ96HA7 1378 aa11.62□□□□□ -0.55
SMAD3-212ENST00000559937 ADGRL2O95490 1459 aa11.62□□□□□ -0.55
SMAD3-212ENST00000559937 CAMSAP2Q08AD1 1489 aa11.62□□□□□ -0.55
SMAD3-212ENST00000559937 JPH4Q96JJ6 628 aa11.61□□□□□ -0.55
SMAD3-212ENST00000559937 ABCC5O15440 1437 aa11.6□□□□□ -0.55
SMAD3-212ENST00000559937 KDM5BQ9UGL1 1544 aa11.6□□□□□ -0.55
SMAD3-212ENST00000559937 GPATCH8Q9UKJ3 1502 aaKnown RBP11.6□□□□□ -0.55
SMAD3-212ENST00000559937 DENND4BO75064 1496 aaPredicted RBP11.58□□□□□ -0.56
SMAD3-212ENST00000559937 ABCC10Q5T3U5 1492 aa11.58□□□□□ -0.56
SMAD3-212ENST00000559937 CLASP1Q7Z460 1538 aa11.58□□□□□ -0.56
SMAD3-212ENST00000559937 PRG4Q92954 1404 aaPredicted RBP11.58□□□□□ -0.56
SMAD3-212ENST00000559937 SHANK2Q9UPX8 1470 aa11.57□□□□□ -0.56
SMAD3-212ENST00000559937 ATP10BO94823 1461 aa11.57□□□□□ -0.56
SMAD3-212ENST00000559937 ARHGEF5Q12774 1597 aa11.56□□□□□ -0.56
SMAD3-212ENST00000559937 RRP7BPQ9NSQ0 103 aa11.55□□□□□ -0.56
SMAD3-212ENST00000559937 PREX2Q70Z35 1606 aa11.55□□□□□ -0.56
SMAD3-212ENST00000559937 POLR1AO95602 1720 aaPredicted RBP11.54□□□□□ -0.56
SMAD3-212ENST00000559937 CHIC2Q9UKJ5 165 aa11.53□□□□□ -0.56
SMAD3-212ENST00000559937 CDC42BPBQ9Y5S2 1711 aa11.52□□□□□ -0.56
SMAD3-212ENST00000559937 RPRD2Q5VT52 1461 aaKnown RBP11.52□□□□□ -0.56
SMAD3-212ENST00000559937 PTPRGP23470 1445 aa11.52□□□□□ -0.57
SMAD3-212ENST00000559937 NCOA1Q15788 1441 aa11.52□□□□□ -0.57
SMAD3-212ENST00000559937 KDM5DQ9BY66 1539 aa11.51□□□□□ -0.57
SMAD3-212ENST00000559937 PLEKHD1A6NEE1 506 aa11.51□□□□□ -0.57
SMAD3-212ENST00000559937 ARID3CA6NKF2 412 aa11.51□□□□□ -0.57
SMAD3-212ENST00000559937 CFDP1Q9UEE9 299 aaPredicted RBP11.51□□□□□ -0.57
SMAD3-212ENST00000559937 TRIM52Q96A61 297 aa11.5□□□□□ -0.57
SMAD3-212ENST00000559937 MPHOSPH9Q99550 1183 aa11.5□□□□□ -0.57
SMAD3-212ENST00000559937 GTF3C3Q9Y5Q9 886 aa11.5□□□□□ -0.57
SMAD3-212ENST00000559937 ANKRD30BQ9BXX2 1392 aa11.5□□□□□ -0.57
SMAD3-212ENST00000559937 ANKRD30AQ9BXX3 1397 aa11.5□□□□□ -0.57
SMAD3-212ENST00000559937 PZPP20742 1482 aa11.5□□□□□ -0.57
SMAD3-212ENST00000559937 MAST1Q9Y2H9 1570 aa11.5□□□□□ -0.57
SMAD3-212ENST00000559937 MYO5CQ9NQX4 1742 aa11.49□□□□□ -0.57
SMAD3-212ENST00000559937 YTHDC1Q96MU7 727 aaKnown RBP11.49□□□□□ -0.57
SMAD3-212ENST00000559937 ABCC2Q92887 1545 aa11.49□□□□□ -0.57
SMAD3-212ENST00000559937 ZNF644Q9H582 1327 aaPredicted RBP11.48□□□□□ -0.57
SMAD3-212ENST00000559937 TEX14Q8IWB6 1497 aa11.48□□□□□ -0.57
SMAD3-212ENST00000559937 SAMD9LQ8IVG5 1584 aa11.47□□□□□ -0.57
SMAD3-212ENST00000559937 C9orf84Q5VXU9 1444 aa11.46□□□□□ -0.57
SMAD3-212ENST00000559937 TRHP20396 242 aaPredicted RBP11.46□□□□□ -0.57
SMAD3-212ENST00000559937 UHRF1BP1LA0JNW5 1464 aa11.44□□□□□ -0.58
SMAD3-212ENST00000559937 CCDC141Q6ZP82 1450 aa11.44□□□□□ -0.58
SMAD3-212ENST00000559937 KIAA1107Q9UPP5 1409 aa11.44□□□□□ -0.58
SMAD3-212ENST00000559937 PLXNC1O60486 1568 aa11.44□□□□□ -0.58
SMAD3-212ENST00000559937 PLEKHH2Q8IVE3 1493 aa11.44□□□□□ -0.58
SMAD3-212ENST00000559937 ANKRD50Q9ULJ7 1429 aa11.43□□□□□ -0.58
SMAD3-212ENST00000559937 TTC37Q6PGP7 1564 aa11.43□□□□□ -0.58
SMAD3-212ENST00000559937 CCER2I3L3R5 266 aa11.43□□□□□ -0.58
SMAD3-212ENST00000559937 MBD5Q9P267 1494 aa11.43□□□□□ -0.58
SMAD3-212ENST00000559937 ZCCHC11Q5TAX3 1644 aaKnown RBP11.42□□□□□ -0.58
SMAD3-212ENST00000559937 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.42□□□□□ -0.58
SMAD3-212ENST00000559937 DDX10Q13206 875 aaKnown RBP11.42□□□□□ -0.58
SMAD3-212ENST00000559937 RSPH4AQ5TD94 716 aa11.42□□□□□ -0.58
SMAD3-212ENST00000559937 PELP1Q8IZL8 1130 aaKnown RBP11.42□□□□□ -0.58
SMAD3-212ENST00000559937 UNC13BO14795 1591 aa11.41□□□□□ -0.58
SMAD3-212ENST00000559937 SLC4A1APQ9BWU0 796 aaKnown RBP11.41□□□□□ -0.58
SMAD3-212ENST00000559937 ERCC6L2Q5T890 1561 aa11.41□□□□□ -0.58
SMAD3-212ENST00000559937 ARHGEF12Q9NZN5 1544 aa11.4□□□□□ -0.58
SMAD3-212ENST00000559937 ARAP3Q8WWN8 1544 aa11.39□□□□□ -0.59
SMAD3-212ENST00000559937 ANP32CO43423 234 aa11.38□□□□□ -0.59
SMAD3-212ENST00000559937 TSPY4P0CV99 314 aa11.38□□□□□ -0.59
SMAD3-212ENST00000559937 TSPY10P0CW01 314 aa11.38□□□□□ -0.59
SMAD3-212ENST00000559937 EIF4G2P78344 907 aaKnown RBP eCLIP11.38□□□□□ -0.591e-12■■■■■ 28.7
SMAD3-212ENST00000559937 L3MBTL2Q969R5 705 aa11.38□□□□□ -0.59
SMAD3-212ENST00000559937 ZNF777Q9ULD5 760 aaPredicted RBP11.38□□□□□ -0.59
SMAD3-212ENST00000559937 ARHGAP5Q13017 1502 aa11.38□□□□□ -0.59
SMAD3-212ENST00000559937 SYCP2Q9BX26 1530 aa11.37□□□□□ -0.59
SMAD3-212ENST00000559937 KIF15Q9NS87 1388 aa11.37□□□□□ -0.59
SMAD3-212ENST00000559937 IQGAP3Q86VI3 1631 aa11.36□□□□□ -0.59
SMAD3-212ENST00000559937 HSPA5P11021 654 aaKnown RBP11.36□□□□□ -0.59
SMAD3-212ENST00000559937 UHRF1BP1Q6BDS2 1440 aa11.35□□□□□ -0.59
SMAD3-212ENST00000559937 CNTLNQ9NXG0 1405 aa11.35□□□□□ -0.59
SMAD3-212ENST00000559937 SPATA31E1Q6ZUB1 1445 aa11.35□□□□□ -0.59
SMAD3-212ENST00000559937 ABCC1P33527 1531 aa11.34□□□□□ -0.59
SMAD3-212ENST00000559937 DUOX2Q9NRD8 1548 aa11.34□□□□□ -0.59
SMAD3-212ENST00000559937 FAM135AQ9P2D6 1515 aa11.34□□□□□ -0.59
SMAD3-212ENST00000559937 KDM5CP41229 1560 aa11.33□□□□□ -0.6
SMAD3-212ENST00000559937 MAGI2Q86UL8 1455 aa11.33□□□□□ -0.6
SMAD3-212ENST00000559937 FOXD1Q16676 465 aa11.33□□□□□ -0.6
SMAD3-212ENST00000559937 PLCH2O75038 1416 aa11.33□□□□□ -0.6
SMAD3-212ENST00000559937 RALGAPBQ86X10 1494 aa11.32□□□□□ -0.6
SMAD3-212ENST00000559937 NUP155O75694 1391 aa11.32□□□□□ -0.6
SMAD3-212ENST00000559937 PKD2Q13563 968 aa11.32□□□□□ -0.6
SMAD3-212ENST00000559937 HIRIP3Q9BW71 556 aaPredicted RBP11.32□□□□□ -0.6
SMAD3-212ENST00000559937 CCDC7Q96M83 1385 aa11.31□□□□□ -0.6
SMAD3-212ENST00000559937 WASHC2AQ641Q2 1341 aa11.31□□□□□ -0.6
SMAD3-212ENST00000559937 LAMC1P11047 1609 aa11.31□□□□□ -0.6
SMAD3-212ENST00000559937 ERBINQ96RT1 1412 aa11.3□□□□□ -0.6
SMAD3-212ENST00000559937 HNRNPMP52272 730 aaKnown RBP eCLIP11.3□□□□□ -0.69e-7■■■■□ 22.9
SMAD3-212ENST00000559937 NBPF8Q3BBV2 869 aa11.3□□□□□ -0.6
SMAD3-212ENST00000559937 ABCA9Q8IUA7 1624 aa11.29□□□□□ -0.6
SMAD3-212ENST00000559937 ARID4BQ4LE39 1312 aaPredicted RBP11.29□□□□□ -0.6
SMAD3-212ENST00000559937 BCORL1Q5H9F3 1711 aa11.28□□□□□ -0.6
SMAD3-212ENST00000559937 TRPM1Q7Z4N2 1603 aa11.27□□□□□ -0.6
SMAD3-212ENST00000559937 ATP10AO60312 1499 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms