RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 CHMP3Q9Y3E7 222 aa17.76■□□□□ 0.43
SPG11-210ENST00000558319 GNL2Q13823 731 aaKnown RBP17.75■□□□□ 0.43
SPG11-210ENST00000558319 GGT6Q6P531 493 aa17.75■□□□□ 0.43
SPG11-210ENST00000558319 NOL8Q76FK4 1167 aaKnown RBP17.75■□□□□ 0.43
SPG11-210ENST00000558319 FOXD4L1Q9NU39 408 aa17.74■□□□□ 0.43
SPG11-210ENST00000558319 KIAA2012Q0VF49 1180 aa17.74■□□□□ 0.43
SPG11-210ENST00000558319 VSIG10Q8N0Z9 540 aa17.73■□□□□ 0.43
SPG11-210ENST00000558319 CREBRFQ8IUR6 639 aa17.72■□□□□ 0.43
SPG11-210ENST00000558319 FBXO3Q9UK99 471 aa17.72■□□□□ 0.43
SPG11-210ENST00000558319 EIF4G1Q04637 1599 aaKnown RBP17.7■□□□□ 0.42
SPG11-210ENST00000558319 HSP90AA2PQ14568 343 aaPredicted RBP17.7■□□□□ 0.42
SPG11-210ENST00000558319 NOC3LQ8WTT2 800 aaKnown RBP17.7■□□□□ 0.42
SPG11-210ENST00000558319 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
SPG11-210ENST00000558319 MORC1Q86VD1 984 aa17.69■□□□□ 0.42
SPG11-210ENST00000558319 TSHZ2Q9NRE2 1034 aa17.69■□□□□ 0.42
SPG11-210ENST00000558319 RTF1Q92541 710 aaKnown RBP17.68■□□□□ 0.42
SPG11-210ENST00000558319 HSP90B1P14625 803 aaKnown RBP17.68■□□□□ 0.42
SPG11-210ENST00000558319 GOLGA6L3A6NEY3 463 aa17.68■□□□□ 0.42
SPG11-210ENST00000558319 FOXD4L5Q5VV16 416 aaPredicted RBP17.67■□□□□ 0.42
SPG11-210ENST00000558319 WWC1Q8IX03 1113 aa17.67■□□□□ 0.42
SPG11-210ENST00000558319 FOXD4L4Q8WXT5 416 aaPredicted RBP17.67■□□□□ 0.42
SPG11-210ENST00000558319 CDCA8Q53HL2 280 aa17.67■□□□□ 0.42
SPG11-210ENST00000558319 LTV1Q96GA3 475 aaPredicted RBP17.67■□□□□ 0.42
SPG11-210ENST00000558319 ERCC6Q03468 1493 aa17.66■□□□□ 0.42
SPG11-210ENST00000558319 GBP4Q96PP9 640 aa17.65■□□□□ 0.42
SPG11-210ENST00000558319 MCCP23508 829 aa17.64■□□□□ 0.42
SPG11-210ENST00000558319 TIMELESSQ9UNS1 1208 aa17.62■□□□□ 0.41
SPG11-210ENST00000558319 ITPRIPQ8IWB1 547 aa17.62■□□□□ 0.41
SPG11-210ENST00000558319 CCDC146Q8IYE0 955 aa17.62■□□□□ 0.41
SPG11-210ENST00000558319 CEP162Q5TB80 1403 aa17.6■□□□□ 0.41
SPG11-210ENST00000558319 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
SPG11-210ENST00000558319 SLC4A10Q6U841 1118 aa17.59■□□□□ 0.41
SPG11-210ENST00000558319 TMF1P82094 1093 aa17.59■□□□□ 0.41
SPG11-210ENST00000558319 A0A0U1RQG5 324 aaPredicted RBP17.58■□□□□ 0.41
SPG11-210ENST00000558319 GOLGA6L1Q8N7Z2 621 aa17.58■□□□□ 0.41
SPG11-210ENST00000558319 VPS53Q5VIR6 699 aa17.58■□□□□ 0.4
SPG11-210ENST00000558319 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.4
SPG11-210ENST00000558319 G3V3G9 751 aa17.57■□□□□ 0.4
SPG11-210ENST00000558319 MS4A1P11836 297 aa17.57■□□□□ 0.4
SPG11-210ENST00000558319 DCAF8Q5TAQ9 597 aa17.57■□□□□ 0.4
SPG11-210ENST00000558319 MFAP1P55081 439 aaKnown RBP17.57■□□□□ 0.4
SPG11-210ENST00000558319 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.57■□□□□ 0.4
SPG11-210ENST00000558319 IPO9Q96P70 1041 aaKnown RBP17.56■□□□□ 0.4
SPG11-210ENST00000558319 CHMP4BQ9H444 224 aaKnown RBP17.56■□□□□ 0.4
SPG11-210ENST00000558319 TRIM6-TRIM34B2RNG4 842 aa17.56■□□□□ 0.4
SPG11-210ENST00000558319 FOXD4L6Q3SYB3 417 aaPredicted RBP17.56■□□□□ 0.4
SPG11-210ENST00000558319 GORABQ5T7V8 394 aa17.56■□□□□ 0.4
SPG11-210ENST00000558319 FOXD4L3Q6VB84 417 aaPredicted RBP17.56■□□□□ 0.4
SPG11-210ENST00000558319 U2AF1L5P0DN76 240 aaPredicted RBP17.55■□□□□ 0.4
SPG11-210ENST00000558319 U2AF1Q01081 240 aaKnown RBP eCLIP17.55■□□□□ 0.45e-6■■■□□ 15.5
SPG11-210ENST00000558319 CLUAP1Q96AJ1 413 aa17.55■□□□□ 0.4
SPG11-210ENST00000558319 TAF7LQ5H9L4 462 aa17.54■□□□□ 0.4
SPG11-210ENST00000558319 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.54■□□□□ 0.4
SPG11-210ENST00000558319 TOMM22Q9NS69 142 aa17.53■□□□□ 0.4
SPG11-210ENST00000558319 MSH5O43196 834 aa17.53■□□□□ 0.4
SPG11-210ENST00000558319 KIAA1211Q6ZU35 1233 aa17.53■□□□□ 0.4
SPG11-210ENST00000558319 NGEFQ8N5V2 710 aa17.52■□□□□ 0.4
SPG11-210ENST00000558319 PTMSP20962 102 aa17.52■□□□□ 0.4
SPG11-210ENST00000558319 RAD21O60216 631 aa17.52■□□□□ 0.4
SPG11-210ENST00000558319 PATL2C9JE40 543 aaKnown RBP17.51■□□□□ 0.39
SPG11-210ENST00000558319 RSPH6AQ9H0K4 717 aa17.51■□□□□ 0.39
SPG11-210ENST00000558319 HSPA5P11021 654 aaKnown RBP17.5■□□□□ 0.39
SPG11-210ENST00000558319 SYAP1Q96A49 352 aaPredicted RBP17.5■□□□□ 0.39
SPG11-210ENST00000558319 CALD1Q05682 793 aaKnown RBP17.49■□□□□ 0.39
SPG11-210ENST00000558319 SLC4A3P48751 1232 aa17.49■□□□□ 0.39
SPG11-210ENST00000558319 ZNF771Q7L3S4 317 aaPredicted RBP17.49■□□□□ 0.39
SPG11-210ENST00000558319 CCNB3Q8WWL7 1395 aa17.49■□□□□ 0.39
SPG11-210ENST00000558319 RASSF8Q8NHQ8 419 aa17.48■□□□□ 0.39
SPG11-210ENST00000558319 FRAT2O75474 233 aaPredicted RBP17.48■□□□□ 0.39
SPG11-210ENST00000558319 RRP7AQ9Y3A4 280 aaKnown RBP17.48■□□□□ 0.39
SPG11-210ENST00000558319 KLHL34Q8N239 644 aa17.47■□□□□ 0.39
SPG11-210ENST00000558319 TMX4Q9H1E5 349 aaPredicted RBP17.47■□□□□ 0.39
SPG11-210ENST00000558319 TCERG1O14776 1098 aaKnown RBP17.47■□□□□ 0.39
SPG11-210ENST00000558319 GOLGA3Q08378 1498 aa17.47■□□□□ 0.39
SPG11-210ENST00000558319 RCAN3Q9UKA8 241 aa17.46■□□□□ 0.39
SPG11-210ENST00000558319 HDGFL2Q7Z4V5 671 aaPredicted RBP17.46■□□□□ 0.39
SPG11-210ENST00000558319 TPM4P67936 248 aa17.46■□□□□ 0.38
SPG11-210ENST00000558319 KANK1Q14678 1352 aa17.45■□□□□ 0.38
SPG11-210ENST00000558319 SETQ01105 290 aaPredicted RBP17.45■□□□□ 0.38
SPG11-210ENST00000558319 ELL2O00472 640 aaPredicted RBP17.45■□□□□ 0.38
SPG11-210ENST00000558319 PKD2Q13563 968 aa17.45■□□□□ 0.38
SPG11-210ENST00000558319 NECTIN2Q92692 538 aa17.44■□□□□ 0.38
SPG11-210ENST00000558319 SAMD1Q6SPF0 538 aaPredicted RBP17.43■□□□□ 0.38
SPG11-210ENST00000558319 PES1O00541 588 aaKnown RBP17.43■□□□□ 0.38
SPG11-210ENST00000558319 CCAR2Q8N163 923 aaKnown RBP17.43■□□□□ 0.38
SPG11-210ENST00000558319 BCL11BQ9C0K0 894 aaPredicted RBP17.43■□□□□ 0.38
SPG11-210ENST00000558319 GTF2E1P29083 439 aaPredicted RBP17.41■□□□□ 0.38
SPG11-210ENST00000558319 FBXW7Q969H0 707 aa17.41■□□□□ 0.38
SPG11-210ENST00000558319 BCL2L13Q9BXK5 485 aa17.4■□□□□ 0.38
SPG11-210ENST00000558319 SMC4Q9NTJ3 1288 aa17.4■□□□□ 0.38
SPG11-210ENST00000558319 CCER2I3L3R5 266 aa17.39■□□□□ 0.37
SPG11-210ENST00000558319 FAM13BQ9NYF5 915 aa17.39■□□□□ 0.37
SPG11-210ENST00000558319 ROCK2O75116 1388 aaKnown RBP17.39■□□□□ 0.37
SPG11-210ENST00000558319 NGDNQ8NEJ9 315 aaKnown RBP17.39■□□□□ 0.37
SPG11-210ENST00000558319 RWDD1Q9H446 243 aaPredicted RBP17.39■□□□□ 0.37
SPG11-210ENST00000558319 HTATSF1O43719 755 aaKnown RBP17.38■□□□□ 0.37
SPG11-210ENST00000558319 ZNF592Q92610 1267 aa17.38■□□□□ 0.37
SPG11-210ENST00000558319 GSE1Q14687 1217 aa17.37■□□□□ 0.37
SPG11-210ENST00000558319 CFAP44Q96MT7 982 aa17.37■□□□□ 0.37
SPG11-210ENST00000558319 BAZ1BQ9UIG0 1483 aaKnown RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms