RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 MYO5CQ9NQX4 1742 aa21.63■■□□□ 1.05
USP28-212ENST00000544750 SCAPERQ9BY12 1400 aa21.63■■□□□ 1.05
USP28-212ENST00000544750 PREX1Q8TCU6 1659 aa21.6■■□□□ 1.05
USP28-212ENST00000544750 ATP10AO60312 1499 aa21.58■■□□□ 1.05
USP28-212ENST00000544750 PLPPR3Q6T4P5 718 aa21.58■■□□□ 1.05
USP28-212ENST00000544750 MLECQ14165 292 aa21.57■■□□□ 1.04
USP28-212ENST00000544750 C9orf84Q5VXU9 1444 aa21.56■■□□□ 1.04
USP28-212ENST00000544750 CERKQ8TCT0 537 aa21.56■■□□□ 1.04
USP28-212ENST00000544750 SETD1BQ9UPS6 1966 aaKnown RBP21.56■■□□□ 1.04
USP28-212ENST00000544750 KIF14Q15058 1648 aa21.55■■□□□ 1.04
USP28-212ENST00000544750 STRCQ7RTU9 1775 aa21.54■■□□□ 1.04
USP28-212ENST00000544750 KDM5CP41229 1560 aa21.53■■□□□ 1.04
USP28-212ENST00000544750 LRRIQ1Q96JM4 1722 aa21.52■■□□□ 1.04
USP28-212ENST00000544750 FMN1Q68DA7 1419 aa21.5■■□□□ 1.03
USP28-212ENST00000544750 EFCAB2Q5VUJ9 269 aa21.5■■□□□ 1.03
USP28-212ENST00000544750 ZNF518AQ6AHZ1 1483 aa21.5■■□□□ 1.03
USP28-212ENST00000544750 ARHGAP35Q9NRY4 1499 aa21.5■■□□□ 1.03
USP28-212ENST00000544750 CDC42BPBQ9Y5S2 1711 aa21.48■■□□□ 1.03
USP28-212ENST00000544750 REREQ9P2R6 1566 aa21.48■■□□□ 1.03
USP28-212ENST00000544750 CEBPAP49715 358 aaPredicted RBP21.47■■□□□ 1.03
USP28-212ENST00000544750 DIP2CQ9Y2E4 1556 aa21.47■■□□□ 1.03
USP28-212ENST00000544750 TROQ12816 1431 aaPredicted RBP21.46■■□□□ 1.03
USP28-212ENST00000544750 ARHGAP5Q13017 1502 aa21.44■■□□□ 1.02
USP28-212ENST00000544750 ABCA6Q8N139 1617 aa21.44■■□□□ 1.02
USP28-212ENST00000544750 C3P01024 1663 aa21.44■■□□□ 1.02
USP28-212ENST00000544750 AFAP1Q8N556 730 aa21.43■■□□□ 1.02
USP28-212ENST00000544750 CDK11AQ9UQ88 783 aaPredicted RBP21.43■■□□□ 1.02
USP28-212ENST00000544750 MLH3Q9UHC1 1453 aa21.4■■□□□ 1.02
USP28-212ENST00000544750 UHRF1BP1Q6BDS2 1440 aa21.39■■□□□ 1.02
USP28-212ENST00000544750 ATP1B4Q9UN42 357 aaPredicted RBP21.39■■□□□ 1.01
USP28-212ENST00000544750 PREX2Q70Z35 1606 aa21.39■■□□□ 1.01
USP28-212ENST00000544750 ITSN2Q9NZM3 1697 aa21.38■■□□□ 1.01
USP28-212ENST00000544750 AGLP35573 1532 aa21.38■■□□□ 1.01
USP28-212ENST00000544750 UBTFP17480 764 aaKnown RBP21.37■■□□□ 1.01
USP28-212ENST00000544750 DMRT2Q9Y5R5 561 aa21.37■■□□□ 1.01
USP28-212ENST00000544750 CLIP1P30622 1438 aa21.37■■□□□ 1.01
USP28-212ENST00000544750 ABCC1P33527 1531 aa21.36■■□□□ 1.01
USP28-212ENST00000544750 KIDINS220Q9ULH0 1771 aa21.36■■□□□ 1.01
USP28-212ENST00000544750 PTPRTO14522 1441 aa21.34■■□□□ 1.01
USP28-212ENST00000544750 TRAPPC8Q9Y2L5 1435 aa21.34■■□□□ 1.01
USP28-212ENST00000544750 CDC42BPAQ5VT25 1732 aa21.34■■□□□ 1.01
USP28-212ENST00000544750 EHMT2Q96KQ7 1210 aa21.31■■□□□ 1
USP28-212ENST00000544750 LTBP4Q8N2S1 1624 aa21.3■■□□□ 1
USP28-212ENST00000544750 ILDR2Q71H61 639 aa21.28■■□□□ 1
USP28-212ENST00000544750 MROH2AA6NES4 1674 aa21.27■■□□□ 1
USP28-212ENST00000544750 MYT1LQ9UL68 1186 aa21.26■□□□□ 0.99
USP28-212ENST00000544750 CASKIN1Q8WXD9 1431 aa21.26■□□□□ 0.99
USP28-212ENST00000544750 CCDC18Q5T9S5 1454 aa21.26■□□□□ 0.99
USP28-212ENST00000544750 DISP3Q9P2K9 1392 aa21.24■□□□□ 0.99
USP28-212ENST00000544750 NCOA1Q15788 1441 aa21.24■□□□□ 0.99
USP28-212ENST00000544750 CNTLNQ9NXG0 1405 aa21.24■□□□□ 0.99
USP28-212ENST00000544750 SAMD9LQ8IVG5 1584 aa21.23■□□□□ 0.99
USP28-212ENST00000544750 IQSEC2Q5JU85 1478 aa21.23■□□□□ 0.99
USP28-212ENST00000544750 ESF1Q9H501 851 aaKnown RBP21.19■□□□□ 0.98
USP28-212ENST00000544750 NPATQ14207 1427 aa21.19■□□□□ 0.98
USP28-212ENST00000544750 SPATA31D1Q6ZQQ2 1576 aa21.19■□□□□ 0.98
USP28-212ENST00000544750 CAMSAP1Q5T5Y3 1602 aa21.18■□□□□ 0.98
USP28-212ENST00000544750 SUPT6HQ7KZ85 1726 aaKnown RBP21.18■□□□□ 0.98
USP28-212ENST00000544750 SOCS7O14512 581 aa21.18■□□□□ 0.98
USP28-212ENST00000544750 ZNF142P52746 1687 aaPredicted RBP21.16■□□□□ 0.98
USP28-212ENST00000544750 SYCP2Q9BX26 1530 aa21.16■□□□□ 0.98
USP28-212ENST00000544750 CHIC1Q5VXU3 224 aa21.16■□□□□ 0.98
USP28-212ENST00000544750 PLXNC1O60486 1568 aa21.15■□□□□ 0.98
USP28-212ENST00000544750 GPATCH8Q9UKJ3 1502 aaKnown RBP21.15■□□□□ 0.98
USP28-212ENST00000544750 FYCO1Q9BQS8 1478 aa21.15■□□□□ 0.98
USP28-212ENST00000544750 CLTCQ00610 1675 aaKnown RBP21.15■□□□□ 0.98
USP28-212ENST00000544750 INO80Q9ULG1 1556 aaPredicted RBP21.14■□□□□ 0.97
USP28-212ENST00000544750 ZMYM3Q14202 1370 aa21.13■□□□□ 0.97
USP28-212ENST00000544750 ATP7AQ04656 1500 aa21.13■□□□□ 0.97
USP28-212ENST00000544750 MYO3AQ8NEV4 1616 aa21.11■□□□□ 0.97
USP28-212ENST00000544750 KIAA1107Q9UPP5 1409 aa21.1■□□□□ 0.97
USP28-212ENST00000544750 SPAG9O60271 1321 aaKnown RBP21.08■□□□□ 0.97
USP28-212ENST00000544750 PLA2R1Q13018 1463 aa21.08■□□□□ 0.97
USP28-212ENST00000544750 HNRNPMP52272 730 aaKnown RBP eCLIP21.08■□□□□ 0.97
USP28-212ENST00000544750 CEP170BQ9Y4F5 1589 aaPredicted RBP21.07■□□□□ 0.96
USP28-212ENST00000544750 PTPRKQ15262 1439 aa21.07■□□□□ 0.96
USP28-212ENST00000544750 ZNF777Q9ULD5 760 aaPredicted RBP21.07■□□□□ 0.96
USP28-212ENST00000544750 A2MP01023 1474 aa21.07■□□□□ 0.96
USP28-212ENST00000544750 TCOF1Q13428 1488 aaKnown RBP21.07■□□□□ 0.96
USP28-212ENST00000544750 ADGBQ8N7X0 1667 aa21.05■□□□□ 0.96
USP28-212ENST00000544750 NCKAP5LQ9HCH0 1330 aa21.05■□□□□ 0.96
USP28-212ENST00000544750 PLEKHH2Q8IVE3 1493 aa21.05■□□□□ 0.96
USP28-212ENST00000544750 ZNF335Q9H4Z2 1342 aaPredicted RBP21.04■□□□□ 0.96
USP28-212ENST00000544750 PKD2Q13563 968 aa21.01■□□□□ 0.95
USP28-212ENST00000544750 CFDP1Q9UEE9 299 aaPredicted RBP20.99■□□□□ 0.95
USP28-212ENST00000544750 DNMT1P26358 1616 aaKnown RBP20.98■□□□□ 0.95
USP28-212ENST00000544750 PPP6R1Q9UPN7 881 aa20.98■□□□□ 0.95
USP28-212ENST00000544750 CCNB3Q8WWL7 1395 aa20.97■□□□□ 0.95
USP28-212ENST00000544750 TIAM1Q13009 1591 aa20.97■□□□□ 0.95
USP28-212ENST00000544750 MBD5Q9P267 1494 aa20.96■□□□□ 0.95
USP28-212ENST00000544750 GGT6Q6P531 493 aa20.96■□□□□ 0.95
USP28-212ENST00000544750 POLR1AO95602 1720 aaPredicted RBP20.95■□□□□ 0.94
USP28-212ENST00000544750 A2ML1A8K2U0 1454 aa20.95■□□□□ 0.94
USP28-212ENST00000544750 UBAP1LF5GYI3 381 aa20.95■□□□□ 0.94
USP28-212ENST00000544750 RTEL1-TNFRSF6BF6WH68 1400 aa20.93■□□□□ 0.94
USP28-212ENST00000544750 NEURL4Q96JN8 1562 aa20.92■□□□□ 0.94
USP28-212ENST00000544750 MTUS2Q5JR59 1369 aa20.91■□□□□ 0.94
USP28-212ENST00000544750 ZNF644Q9H582 1327 aaPredicted RBP20.91■□□□□ 0.94
USP28-212ENST00000544750 DHX29Q7Z478 1369 aaKnown RBP20.89■□□□□ 0.93
USP28-212ENST00000544750 EHBP1L1Q8N3D4 1523 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms