RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 DCAF11Q8TEB1 546 aa19.53■□□□□ 0.72
CHD4-210ENST00000544040 HSP90B1P14625 803 aaKnown RBP19.53■□□□□ 0.72
CHD4-210ENST00000544040 MORC1Q86VD1 984 aa19.52■□□□□ 0.72
CHD4-210ENST00000544040 GOLGA6L3A6NEY3 463 aa19.52■□□□□ 0.71
CHD4-210ENST00000544040 MFAP1P55081 439 aaKnown RBP19.51■□□□□ 0.71
CHD4-210ENST00000544040 ITPRIPQ8IWB1 547 aa19.51■□□□□ 0.71
CHD4-210ENST00000544040 SRPK2P78362 688 aaKnown RBP19.5■□□□□ 0.71
CHD4-210ENST00000544040 A0A0U1RQG5 324 aaPredicted RBP19.5■□□□□ 0.71
CHD4-210ENST00000544040 GOLGA3Q08378 1498 aa19.5■□□□□ 0.71
CHD4-210ENST00000544040 NOL8Q76FK4 1167 aaKnown RBP19.49■□□□□ 0.71
CHD4-210ENST00000544040 CREBRFQ8IUR6 639 aa19.48■□□□□ 0.71
CHD4-210ENST00000544040 RTF1Q92541 710 aaKnown RBP19.48■□□□□ 0.71
CHD4-210ENST00000544040 PRM3Q9NNZ6 103 aa19.48■□□□□ 0.71
CHD4-210ENST00000544040 PTMSP20962 102 aa19.47■□□□□ 0.71
CHD4-210ENST00000544040 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
CHD4-210ENST00000544040 ZNF330Q9Y3S2 320 aaPredicted RBP19.45■□□□□ 0.7
CHD4-210ENST00000544040 GOLGA6L1Q8N7Z2 621 aa19.45■□□□□ 0.7
CHD4-210ENST00000544040 SYAP1Q96A49 352 aaPredicted RBP19.45■□□□□ 0.7
CHD4-210ENST00000544040 ANO8Q9HCE9 1232 aaPredicted RBP19.45■□□□□ 0.7
CHD4-210ENST00000544040 CFAP44Q96MT7 982 aa19.44■□□□□ 0.7
CHD4-210ENST00000544040 FOXD4L5Q5VV16 416 aaPredicted RBP19.44■□□□□ 0.7
CHD4-210ENST00000544040 FOXD4L4Q8WXT5 416 aaPredicted RBP19.44■□□□□ 0.7
CHD4-210ENST00000544040 RCAN3Q9UKA8 241 aa19.44■□□□□ 0.7
CHD4-210ENST00000544040 TPM4P67936 248 aa19.43■□□□□ 0.7
CHD4-210ENST00000544040 HSPA5P11021 654 aaKnown RBP19.43■□□□□ 0.7
CHD4-210ENST00000544040 RWDD1Q9H446 243 aaPredicted RBP19.41■□□□□ 0.7
CHD4-210ENST00000544040 IPO8O15397 1037 aaKnown RBP19.41■□□□□ 0.7
CHD4-210ENST00000544040 HTATSF1O43719 755 aaKnown RBP19.4■□□□□ 0.7
CHD4-210ENST00000544040 TRIM6-TRIM34B2RNG4 842 aa19.4■□□□□ 0.7
CHD4-210ENST00000544040 CCER2I3L3R5 266 aa19.39■□□□□ 0.69
CHD4-210ENST00000544040 TSHZ2Q9NRE2 1034 aa19.39■□□□□ 0.69
CHD4-210ENST00000544040 STK26Q9P289 416 aa19.39■□□□□ 0.69
CHD4-210ENST00000544040 TCERG1O14776 1098 aaKnown RBP19.38■□□□□ 0.69
CHD4-210ENST00000544040 CALD1Q05682 793 aaKnown RBP19.38■□□□□ 0.69
CHD4-210ENST00000544040 IPO9Q96P70 1041 aaKnown RBP19.38■□□□□ 0.69
CHD4-210ENST00000544040 KTN1Q86UP2 1357 aaKnown RBP19.36■□□□□ 0.69
CHD4-210ENST00000544040 U2AF1L5P0DN76 240 aaPredicted RBP19.35■□□□□ 0.69
CHD4-210ENST00000544040 U2AF1Q01081 240 aaKnown RBP eCLIP19.35■□□□□ 0.69
CHD4-210ENST00000544040 CHMP3Q9Y3E7 222 aa19.35■□□□□ 0.69
CHD4-210ENST00000544040 MLECQ14165 292 aa19.35■□□□□ 0.69
CHD4-210ENST00000544040 HSP90AA2PQ14568 343 aaPredicted RBP19.34■□□□□ 0.69
CHD4-210ENST00000544040 RASSF8Q8NHQ8 419 aa19.34■□□□□ 0.69
CHD4-210ENST00000544040 FOXD1Q16676 465 aa19.34■□□□□ 0.69
CHD4-210ENST00000544040 GORABQ5T7V8 394 aa19.32■□□□□ 0.68
CHD4-210ENST00000544040 CLUAP1Q96AJ1 413 aa19.32■□□□□ 0.68
CHD4-210ENST00000544040 PAK3O75914 559 aaPredicted RBP19.31■□□□□ 0.68
CHD4-210ENST00000544040 PMFBP1Q8TBY8 1022 aa19.31■□□□□ 0.68
CHD4-210ENST00000544040 SMC4Q9NTJ3 1288 aa19.29■□□□□ 0.68
CHD4-210ENST00000544040 CCDC146Q8IYE0 955 aa19.29■□□□□ 0.68
CHD4-210ENST00000544040 PATL2C9JE40 543 aaKnown RBP19.29■□□□□ 0.68
CHD4-210ENST00000544040 SLC4A3P48751 1232 aa19.28■□□□□ 0.68
CHD4-210ENST00000544040 FOXD4L6Q3SYB3 417 aaPredicted RBP19.28■□□□□ 0.68
CHD4-210ENST00000544040 SLC4A10Q6U841 1118 aa19.28■□□□□ 0.68
CHD4-210ENST00000544040 FOXD4L3Q6VB84 417 aaPredicted RBP19.28■□□□□ 0.68
CHD4-210ENST00000544040 VSIG10Q8N0Z9 540 aa19.28■□□□□ 0.68
CHD4-210ENST00000544040 CCAR2Q8N163 923 aaKnown RBP19.27■□□□□ 0.68
CHD4-210ENST00000544040 HDGFL2Q7Z4V5 671 aaPredicted RBP19.27■□□□□ 0.67
CHD4-210ENST00000544040 PES1O00541 588 aaKnown RBP19.26■□□□□ 0.67
CHD4-210ENST00000544040 CSPP1Q1MSJ5 1256 aa19.26■□□□□ 0.67
CHD4-210ENST00000544040 TPM3P06753 285 aa19.26■□□□□ 0.67
CHD4-210ENST00000544040 CCNB3Q8WWL7 1395 aa19.26■□□□□ 0.67
CHD4-210ENST00000544040 GPATCH3Q96I76 525 aa19.25■□□□□ 0.67
CHD4-210ENST00000544040 CSB-PGBD3P0DP91 1061 aa19.25■□□□□ 0.67
CHD4-210ENST00000544040 TAF7LQ5H9L4 462 aa19.24■□□□□ 0.67
CHD4-210ENST00000544040 KANK1Q14678 1352 aa19.24■□□□□ 0.67
CHD4-210ENST00000544040 SETQ01105 290 aaPredicted RBP19.23■□□□□ 0.67
CHD4-210ENST00000544040 TOMM22Q9NS69 142 aa19.23■□□□□ 0.67
CHD4-210ENST00000544040 CCDC34Q96HJ3 373 aa19.22■□□□□ 0.67
CHD4-210ENST00000544040 PHF14O94880 888 aa19.22■□□□□ 0.67
CHD4-210ENST00000544040 STK31Q9BXU1 1019 aa19.22■□□□□ 0.67
CHD4-210ENST00000544040 TNIKQ9UKE5 1360 aa19.22■□□□□ 0.67
CHD4-210ENST00000544040 VPS53Q5VIR6 699 aa19.21■□□□□ 0.67
CHD4-210ENST00000544040 SF3A1Q15459 793 aaKnown RBP19.21■□□□□ 0.67
CHD4-210ENST00000544040 CEP89Q96ST8 783 aa19.21■□□□□ 0.67
CHD4-210ENST00000544040 FBXO3Q9UK99 471 aa19.21■□□□□ 0.67
CHD4-210ENST00000544040 CCDC9Q9Y3X0 531 aaKnown RBP19.21■□□□□ 0.67
CHD4-210ENST00000544040 ROCK2O75116 1388 aaKnown RBP19.2■□□□□ 0.66
CHD4-210ENST00000544040 EEA1Q15075 1411 aa19.2■□□□□ 0.66
CHD4-210ENST00000544040 KIF16BQ96L93 1317 aa19.2■□□□□ 0.66
CHD4-210ENST00000544040 ZNF592Q92610 1267 aa19.19■□□□□ 0.66
CHD4-210ENST00000544040 ZNF771Q7L3S4 317 aaPredicted RBP19.19■□□□□ 0.66
CHD4-210ENST00000544040 WWC1Q8IX03 1113 aa19.19■□□□□ 0.66
CHD4-210ENST00000544040 PKD2Q13563 968 aa19.18■□□□□ 0.66
CHD4-210ENST00000544040 ST18O60284 1047 aa19.18■□□□□ 0.66
CHD4-210ENST00000544040 RSPH6AQ9H0K4 717 aa19.18■□□□□ 0.66
CHD4-210ENST00000544040 TPD52L1Q16890 204 aaPredicted RBP19.17■□□□□ 0.66
CHD4-210ENST00000544040 CEP164Q9UPV0 1460 aa19.17■□□□□ 0.66
CHD4-210ENST00000544040 RALBP1Q15311 655 aa19.17■□□□□ 0.66
CHD4-210ENST00000544040 HMMRO75330 724 aa19.17■□□□□ 0.66
CHD4-210ENST00000544040 DDX11L8A8MPP1 907 aa19.16■□□□□ 0.66
CHD4-210ENST00000544040 MARCH6O60337 910 aa19.16■□□□□ 0.66
CHD4-210ENST00000544040 GGT6Q6P531 493 aa19.16■□□□□ 0.66
CHD4-210ENST00000544040 DDX49Q9Y6V7 483 aaKnown RBP19.16■□□□□ 0.66
CHD4-210ENST00000544040 WRNQ14191 1432 aaPredicted RBP eCLIP19.16■□□□□ 0.669e-6■■■■■ 50.1
CHD4-210ENST00000544040 H3BQV1 296 aa19.16■□□□□ 0.66
CHD4-210ENST00000544040 IFFO2Q5TF58 517 aa19.16■□□□□ 0.66
CHD4-210ENST00000544040 SPAG9O60271 1321 aaKnown RBP19.15■□□□□ 0.66
CHD4-210ENST00000544040 KIF27Q86VH2 1401 aa19.15■□□□□ 0.66
CHD4-210ENST00000544040 CENPJQ9HC77 1338 aaPredicted RBP19.15■□□□□ 0.66
CHD4-210ENST00000544040 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms