RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GPATCH8Q9UKJ3 1502 aaKnown RBP14.18□□□□□ -0.14
SS18-205ENST00000542420 PPP1R15AO75807 674 aaPredicted RBP14.18□□□□□ -0.14
SS18-205ENST00000542420 MIER1Q8N108 512 aa14.16□□□□□ -0.14
SS18-205ENST00000542420 ABCC10Q5T3U5 1492 aa14.16□□□□□ -0.14
SS18-205ENST00000542420 TONSLQ96HA7 1378 aa14.16□□□□□ -0.14
SS18-205ENST00000542420 NEUROD1Q13562 356 aa14.15□□□□□ -0.14
SS18-205ENST00000542420 ARHGEF5Q12774 1597 aa14.15□□□□□ -0.14
SS18-205ENST00000542420 KDM6BO15054 1643 aa14.15□□□□□ -0.14
SS18-205ENST00000542420 KDM5BQ9UGL1 1544 aa14.14□□□□□ -0.15
SS18-205ENST00000542420 PRG4Q92954 1404 aaPredicted RBP14.14□□□□□ -0.15
SS18-205ENST00000542420 ATP10BO94823 1461 aa14.14□□□□□ -0.15
SS18-205ENST00000542420 DENND4BO75064 1496 aaPredicted RBP14.13□□□□□ -0.15
SS18-205ENST00000542420 SIN3AQ96ST3 1273 aa14.12□□□□□ -0.15
SS18-205ENST00000542420 PREX2Q70Z35 1606 aa14.12□□□□□ -0.15
SS18-205ENST00000542420 KDM5DQ9BY66 1539 aa14.09□□□□□ -0.15
SS18-205ENST00000542420 PHF23Q9BUL5 403 aaPredicted RBP14.09□□□□□ -0.15
SS18-205ENST00000542420 PTPRGP23470 1445 aa14.08□□□□□ -0.16
SS18-205ENST00000542420 NCOA1Q15788 1441 aa14.08□□□□□ -0.16
SS18-205ENST00000542420 CLASP1Q7Z460 1538 aa14.08□□□□□ -0.16
SS18-205ENST00000542420 MAST1Q9Y2H9 1570 aa14.07□□□□□ -0.16
SS18-205ENST00000542420 PLEKHD1A6NEE1 506 aa14.07□□□□□ -0.16
SS18-205ENST00000542420 FBLN2P98095 1184 aa14.07□□□□□ -0.16
SS18-205ENST00000542420 RPRD2Q5VT52 1461 aaKnown RBP14.07□□□□□ -0.16
SS18-205ENST00000542420 CFDP1Q9UEE9 299 aaPredicted RBP14.07□□□□□ -0.16
SS18-205ENST00000542420 ABCC2Q92887 1545 aa14.06□□□□□ -0.16
SS18-205ENST00000542420 POLR1AO95602 1720 aaPredicted RBP14.06□□□□□ -0.16
SS18-205ENST00000542420 CDC42BPBQ9Y5S2 1711 aa14.06□□□□□ -0.16
SS18-205ENST00000542420 RRP7BPQ9NSQ0 103 aa14.06□□□□□ -0.16
SS18-205ENST00000542420 ANKRD30AQ9BXX3 1397 aa14.06□□□□□ -0.16
SS18-205ENST00000542420 GTF3C3Q9Y5Q9 886 aa14.06□□□□□ -0.16
SS18-205ENST00000542420 MPHOSPH9Q99550 1183 aa14.05□□□□□ -0.16
SS18-205ENST00000542420 UHRF1BP1LA0JNW5 1464 aa14.05□□□□□ -0.16
SS18-205ENST00000542420 ANKRD30BQ9BXX2 1392 aa14.04□□□□□ -0.16
SS18-205ENST00000542420 MYO5CQ9NQX4 1742 aa14.03□□□□□ -0.16
SS18-205ENST00000542420 PZPP20742 1482 aa14.03□□□□□ -0.16
SS18-205ENST00000542420 RSPH4AQ5TD94 716 aa14.03□□□□□ -0.16
SS18-205ENST00000542420 PLEKHH2Q8IVE3 1493 aa14.02□□□□□ -0.17
SS18-205ENST00000542420 CHIC2Q9UKJ5 165 aa14.02□□□□□ -0.17
SS18-205ENST00000542420 TEX14Q8IWB6 1497 aa14.01□□□□□ -0.17
SS18-205ENST00000542420 SAMD9LQ8IVG5 1584 aa14□□□□□ -0.17
SS18-205ENST00000542420 TRIM52Q96A61 297 aa13.99□□□□□ -0.17
SS18-205ENST00000542420 C9orf84Q5VXU9 1444 aa13.99□□□□□ -0.17
SS18-205ENST00000542420 CCDC141Q6ZP82 1450 aa13.99□□□□□ -0.17
SS18-205ENST00000542420 PLXNC1O60486 1568 aa13.99□□□□□ -0.17
SS18-205ENST00000542420 KIAA1107Q9UPP5 1409 aa13.99□□□□□ -0.17
SS18-205ENST00000542420 MBD5Q9P267 1494 aa13.98□□□□□ -0.17
SS18-205ENST00000542420 ARAP3Q8WWN8 1544 aa13.98□□□□□ -0.17
SS18-205ENST00000542420 ZNF644Q9H582 1327 aaPredicted RBP13.98□□□□□ -0.17
SS18-205ENST00000542420 ANKRD50Q9ULJ7 1429 aa13.97□□□□□ -0.17
SS18-205ENST00000542420 ARID3CA6NKF2 412 aa13.97□□□□□ -0.17
SS18-205ENST00000542420 CCER2I3L3R5 266 aa13.97□□□□□ -0.17
SS18-205ENST00000542420 UNC13BO14795 1591 aa13.96□□□□□ -0.18
SS18-205ENST00000542420 ZCCHC11Q5TAX3 1644 aaKnown RBP13.95□□□□□ -0.18
SS18-205ENST00000542420 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.95□□□□□ -0.18
SS18-205ENST00000542420 ARHGEF12Q9NZN5 1544 aa13.95□□□□□ -0.18
SS18-205ENST00000542420 TTC37Q6PGP7 1564 aa13.95□□□□□ -0.18
SS18-205ENST00000542420 SLC4A1APQ9BWU0 796 aaKnown RBP13.92□□□□□ -0.18
SS18-205ENST00000542420 TSPY4P0CV99 314 aa13.91□□□□□ -0.18
SS18-205ENST00000542420 TSPY10P0CW01 314 aa13.91□□□□□ -0.18
SS18-205ENST00000542420 ERCC6L2Q5T890 1561 aa13.9□□□□□ -0.18
SS18-205ENST00000542420 UHRF1BP1Q6BDS2 1440 aa13.9□□□□□ -0.18
SS18-205ENST00000542420 ARHGAP5Q13017 1502 aa13.89□□□□□ -0.19
SS18-205ENST00000542420 YTHDC1Q96MU7 727 aaKnown RBP13.89□□□□□ -0.19
SS18-205ENST00000542420 IQGAP3Q86VI3 1631 aa13.89□□□□□ -0.19
SS18-205ENST00000542420 EIF4G2P78344 907 aaKnown RBP eCLIP13.89□□□□□ -0.19
SS18-205ENST00000542420 KIF15Q9NS87 1388 aa13.88□□□□□ -0.19
SS18-205ENST00000542420 L3MBTL2Q969R5 705 aa13.88□□□□□ -0.19
SS18-205ENST00000542420 SYCP2Q9BX26 1530 aa13.88□□□□□ -0.19
SS18-205ENST00000542420 MAGI2Q86UL8 1455 aa13.87□□□□□ -0.19
SS18-205ENST00000542420 DDX10Q13206 875 aaKnown RBP13.87□□□□□ -0.19
SS18-205ENST00000542420 DUOX2Q9NRD8 1548 aa13.87□□□□□ -0.19
SS18-205ENST00000542420 ANP32CO43423 234 aa13.87□□□□□ -0.19
SS18-205ENST00000542420 PLCH2O75038 1416 aa13.87□□□□□ -0.19
SS18-205ENST00000542420 SPATA31E1Q6ZUB1 1445 aa13.87□□□□□ -0.19
SS18-205ENST00000542420 ABCC1P33527 1531 aa13.86□□□□□ -0.19
SS18-205ENST00000542420 ZNF777Q9ULD5 760 aaPredicted RBP13.86□□□□□ -0.19
SS18-205ENST00000542420 ERBINQ96RT1 1412 aa13.85□□□□□ -0.19
SS18-205ENST00000542420 FAM135AQ9P2D6 1515 aa13.85□□□□□ -0.19
SS18-205ENST00000542420 RALGAPBQ86X10 1494 aa13.84□□□□□ -0.19
SS18-205ENST00000542420 CNTLNQ9NXG0 1405 aa13.84□□□□□ -0.19
SS18-205ENST00000542420 ARID4BQ4LE39 1312 aaPredicted RBP13.83□□□□□ -0.2
SS18-205ENST00000542420 HSPA5P11021 654 aaKnown RBP13.83□□□□□ -0.2
SS18-205ENST00000542420 BCL11AQ9H165 835 aa13.82□□□□□ -0.2
SS18-205ENST00000542420 LAMC1P11047 1609 aa13.82□□□□□ -0.2
SS18-205ENST00000542420 KDM5CP41229 1560 aa13.82□□□□□ -0.2
SS18-205ENST00000542420 ATP10AO60312 1499 aa13.82□□□□□ -0.2
SS18-205ENST00000542420 NUP155O75694 1391 aa13.82□□□□□ -0.2
SS18-205ENST00000542420 RTEL1-TNFRSF6BF6WH68 1400 aa13.82□□□□□ -0.2
SS18-205ENST00000542420 ABCA9Q8IUA7 1624 aa13.82□□□□□ -0.2
SS18-205ENST00000542420 WDR7Q9Y4E6 1490 aa13.8□□□□□ -0.2
SS18-205ENST00000542420 PKD2Q13563 968 aa13.8□□□□□ -0.2
SS18-205ENST00000542420 CCDC7Q96M83 1385 aa13.8□□□□□ -0.2
SS18-205ENST00000542420 WASHC2AQ641Q2 1341 aa13.78□□□□□ -0.2
SS18-205ENST00000542420 DEPDC5O75140 1603 aa13.78□□□□□ -0.2
SS18-205ENST00000542420 HNRNPMP52272 730 aaKnown RBP eCLIP13.78□□□□□ -0.2
SS18-205ENST00000542420 EIF2AK4Q9P2K8 1649 aaKnown RBP13.77□□□□□ -0.2
SS18-205ENST00000542420 FOXD1Q16676 465 aa13.77□□□□□ -0.21
SS18-205ENST00000542420 NBPF8Q3BBV2 869 aa13.76□□□□□ -0.21
SS18-205ENST00000542420 EFCAB2Q5VUJ9 269 aa13.76□□□□□ -0.21
SS18-205ENST00000542420 INO80Q9ULG1 1556 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms