RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 PLEKHD1A6NEE1 506 aa29.98■■■□□ 2.39
SMPDL3A-203ENST00000539041 RRP7BPQ9NSQ0 103 aa29.98■■■□□ 2.39
SMPDL3A-203ENST00000539041 ROCK1Q13464 1354 aa29.98■■■□□ 2.39
SMPDL3A-203ENST00000539041 ABCC10Q5T3U5 1492 aa29.98■■■□□ 2.39
SMPDL3A-203ENST00000539041 SIN3AQ96ST3 1273 aa29.95■■■□□ 2.38
SMPDL3A-203ENST00000539041 ZNF644Q9H582 1327 aaPredicted RBP29.94■■■□□ 2.38
SMPDL3A-203ENST00000539041 TIMELESSQ9UNS1 1208 aa29.93■■■□□ 2.38
SMPDL3A-203ENST00000539041 CFDP1Q9UEE9 299 aaPredicted RBP29.92■■■□□ 2.38
SMPDL3A-203ENST00000539041 ABCC2Q92887 1545 aa29.9■■■□□ 2.38
SMPDL3A-203ENST00000539041 NEUROD1Q13562 356 aa29.89■■■□□ 2.38
SMPDL3A-203ENST00000539041 ACIN1Q9UKV3 1341 aaKnown RBP29.85■■■□□ 2.37
SMPDL3A-203ENST00000539041 CDC42BPBQ9Y5S2 1711 aa29.85■■■□□ 2.37
SMPDL3A-203ENST00000539041 PREX2Q70Z35 1606 aa29.85■■■□□ 2.37
SMPDL3A-203ENST00000539041 ADGRL2O95490 1459 aa29.82■■■□□ 2.36
SMPDL3A-203ENST00000539041 DENND4BO75064 1496 aaPredicted RBP29.79■■■□□ 2.36
SMPDL3A-203ENST00000539041 ZNF777Q9ULD5 760 aaPredicted RBP29.78■■■□□ 2.36
SMPDL3A-203ENST00000539041 ZCCHC11Q5TAX3 1644 aaKnown RBP29.77■■■□□ 2.36
SMPDL3A-203ENST00000539041 TRIM52Q96A61 297 aa29.77■■■□□ 2.36
SMPDL3A-203ENST00000539041 ARHGEF5Q12774 1597 aa29.75■■■□□ 2.35
SMPDL3A-203ENST00000539041 SHANK2Q9UPX8 1470 aa29.75■■■□□ 2.35
SMPDL3A-203ENST00000539041 UHRF1BP1LA0JNW5 1464 aa29.75■■■□□ 2.35
SMPDL3A-203ENST00000539041 MYO5CQ9NQX4 1742 aa29.75■■■□□ 2.35
SMPDL3A-203ENST00000539041 TONSLQ96HA7 1378 aa29.74■■■□□ 2.35
SMPDL3A-203ENST00000539041 NCOA1Q15788 1441 aa29.73■■■□□ 2.35
SMPDL3A-203ENST00000539041 TTC37Q6PGP7 1564 aa29.73■■■□□ 2.35
SMPDL3A-203ENST00000539041 SAMD9LQ8IVG5 1584 aa29.71■■■□□ 2.35
SMPDL3A-203ENST00000539041 PPP1R15AO75807 674 aaPredicted RBP29.7■■■□□ 2.35
SMPDL3A-203ENST00000539041 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.69■■■□□ 2.34
SMPDL3A-203ENST00000539041 MPHOSPH9Q99550 1183 aa29.67■■■□□ 2.34
SMPDL3A-203ENST00000539041 ANKRD30AQ9BXX3 1397 aa29.67■■■□□ 2.34
SMPDL3A-203ENST00000539041 KDM5BQ9UGL1 1544 aa29.65■■■□□ 2.34
SMPDL3A-203ENST00000539041 C9orf84Q5VXU9 1444 aa29.63■■■□□ 2.33
SMPDL3A-203ENST00000539041 MBD5Q9P267 1494 aa29.6■■■□□ 2.33
SMPDL3A-203ENST00000539041 ARHGAP5Q13017 1502 aa29.6■■■□□ 2.33
SMPDL3A-203ENST00000539041 MIER1Q8N108 512 aa29.59■■■□□ 2.33
SMPDL3A-203ENST00000539041 CCDC141Q6ZP82 1450 aa29.59■■■□□ 2.33
SMPDL3A-203ENST00000539041 PZPP20742 1482 aa29.57■■■□□ 2.32
SMPDL3A-203ENST00000539041 MAST1Q9Y2H9 1570 aa29.55■■■□□ 2.32
SMPDL3A-203ENST00000539041 ANKRD50Q9ULJ7 1429 aa29.54■■■□□ 2.32
SMPDL3A-203ENST00000539041 SYCP2Q9BX26 1530 aa29.54■■■□□ 2.32
SMPDL3A-203ENST00000539041 TSPY4P0CV99 314 aa29.52■■■□□ 2.32
SMPDL3A-203ENST00000539041 TSPY10P0CW01 314 aa29.52■■■□□ 2.32
SMPDL3A-203ENST00000539041 HNRNPMP52272 730 aaKnown RBP eCLIP29.52■■■□□ 2.32
SMPDL3A-203ENST00000539041 ANKRD30BQ9BXX2 1392 aa29.51■■■□□ 2.32
SMPDL3A-203ENST00000539041 PLEKHH2Q8IVE3 1493 aa29.5■■■□□ 2.31
SMPDL3A-203ENST00000539041 RSPH4AQ5TD94 716 aa29.49■■■□□ 2.31
SMPDL3A-203ENST00000539041 SLC4A1APQ9BWU0 796 aaKnown RBP29.49■■■□□ 2.31
SMPDL3A-203ENST00000539041 KDM5DQ9BY66 1539 aa29.48■■■□□ 2.31
SMPDL3A-203ENST00000539041 RPRD2Q5VT52 1461 aaKnown RBP29.47■■■□□ 2.31
SMPDL3A-203ENST00000539041 FOXD1Q16676 465 aa29.46■■■□□ 2.31
SMPDL3A-203ENST00000539041 KIF15Q9NS87 1388 aa29.44■■■□□ 2.3
SMPDL3A-203ENST00000539041 PLCH2O75038 1416 aa29.44■■■□□ 2.3
SMPDL3A-203ENST00000539041 KIAA1107Q9UPP5 1409 aa29.44■■■□□ 2.3
SMPDL3A-203ENST00000539041 PLXNC1O60486 1568 aa29.43■■■□□ 2.3
SMPDL3A-203ENST00000539041 KCNH8Q96L42 1107 aa29.43■■■□□ 2.3
SMPDL3A-203ENST00000539041 ARAP3Q8WWN8 1544 aa29.39■■■□□ 2.3
SMPDL3A-203ENST00000539041 CENPBP07199 599 aaPredicted RBP29.39■■■□□ 2.29
SMPDL3A-203ENST00000539041 ABCC1P33527 1531 aa29.38■■■□□ 2.29
SMPDL3A-203ENST00000539041 TEX14Q8IWB6 1497 aa29.38■■■□□ 2.29
SMPDL3A-203ENST00000539041 WDR7Q9Y4E6 1490 aa29.36■■■□□ 2.29
SMPDL3A-203ENST00000539041 ARHGEF12Q9NZN5 1544 aa29.33■■■□□ 2.29
SMPDL3A-203ENST00000539041 UNC13BO14795 1591 aa29.33■■■□□ 2.29
SMPDL3A-203ENST00000539041 OSCARQ8IYS5 282 aa29.33■■■□□ 2.29
SMPDL3A-203ENST00000539041 ABCA9Q8IUA7 1624 aa29.32■■■□□ 2.28
SMPDL3A-203ENST00000539041 L3MBTL2Q969R5 705 aa29.32■■■□□ 2.28
SMPDL3A-203ENST00000539041 NUP155O75694 1391 aa29.32■■■□□ 2.28
SMPDL3A-203ENST00000539041 EFCAB2Q5VUJ9 269 aa29.31■■■□□ 2.28
SMPDL3A-203ENST00000539041 PKD2Q13563 968 aa29.29■■■□□ 2.28
SMPDL3A-203ENST00000539041 DUOX2Q9NRD8 1548 aa29.26■■■□□ 2.27
SMPDL3A-203ENST00000539041 HIRIP3Q9BW71 556 aaPredicted RBP29.25■■■□□ 2.27
SMPDL3A-203ENST00000539041 FAM135AQ9P2D6 1515 aa29.24■■■□□ 2.27
SMPDL3A-203ENST00000539041 IQGAP3Q86VI3 1631 aa29.22■■■□□ 2.27
SMPDL3A-203ENST00000539041 YTHDC1Q96MU7 727 aaKnown RBP29.21■■■□□ 2.27
SMPDL3A-203ENST00000539041 DDX10Q13206 875 aaKnown RBP29.21■■■□□ 2.27
SMPDL3A-203ENST00000539041 ASXL2Q76L83 1435 aa29.18■■■□□ 2.26
SMPDL3A-203ENST00000539041 TRAPPC8Q9Y2L5 1435 aa29.18■■■□□ 2.26
SMPDL3A-203ENST00000539041 ERBINQ96RT1 1412 aa29.17■■■□□ 2.26
SMPDL3A-203ENST00000539041 POLR1AO95602 1720 aaPredicted RBP29.15■■■□□ 2.26
SMPDL3A-203ENST00000539041 FANCAO15360 1455 aa29.13■■■□□ 2.25
SMPDL3A-203ENST00000539041 MAGI2Q86UL8 1455 aa29.13■■■□□ 2.25
SMPDL3A-203ENST00000539041 ZFYVE16Q7Z3T8 1539 aa29.13■■■□□ 2.25
SMPDL3A-203ENST00000539041 HSPA5P11021 654 aaKnown RBP29.12■■■□□ 2.25
SMPDL3A-203ENST00000539041 NBPF8Q3BBV2 869 aa29.12■■■□□ 2.25
SMPDL3A-203ENST00000539041 RTEL1-TNFRSF6BF6WH68 1400 aa29.11■■■□□ 2.25
SMPDL3A-203ENST00000539041 EIF4G2P78344 907 aaKnown RBP eCLIP29.11■■■□□ 2.25
SMPDL3A-203ENST00000539041 INO80Q9ULG1 1556 aaPredicted RBP29.1■■■□□ 2.25
SMPDL3A-203ENST00000539041 SCAF1Q9H7N4 1312 aaKnown RBP29.1■■■□□ 2.25
SMPDL3A-203ENST00000539041 NPM1P06748 294 aaKnown RBP eCLIP29.06■■■□□ 2.24
SMPDL3A-203ENST00000539041 CFAP74Q9C0B2 1584 aa29.05■■■□□ 2.24
SMPDL3A-203ENST00000539041 SPAG9O60271 1321 aaKnown RBP29.04■■■□□ 2.24
SMPDL3A-203ENST00000539041 ATP7AQ04656 1500 aa29.04■■■□□ 2.24
SMPDL3A-203ENST00000539041 ADGRL1O94910 1474 aa29.03■■■□□ 2.24
SMPDL3A-203ENST00000539041 UHRF1BP1Q6BDS2 1440 aa29.02■■■□□ 2.24
SMPDL3A-203ENST00000539041 DEPDC5O75140 1603 aa29.01■■■□□ 2.24
SMPDL3A-203ENST00000539041 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.98■■■□□ 2.23
SMPDL3A-203ENST00000539041 AFAP1Q8N556 730 aa28.97■■■□□ 2.23
SMPDL3A-203ENST00000539041 SPATA31E1Q6ZUB1 1445 aa28.97■■■□□ 2.23
SMPDL3A-203ENST00000539041 EIF2AK4Q9P2K8 1649 aaKnown RBP28.96■■■□□ 2.23
SMPDL3A-203ENST00000539041 SCAPERQ9BY12 1400 aa28.96■■■□□ 2.23
SMPDL3A-203ENST00000539041 WASHC2AQ641Q2 1341 aa28.95■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms