RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FAM163AQ96GL9 167 aaPredicted RBP10.47□□□□□ -0.73
USP28-207ENST00000538475 MS4A4AQ96JQ5 239 aa10.47□□□□□ -0.73
USP28-207ENST00000538475 SHROOM4Q9ULL8 1493 aa10.45□□□□□ -0.74
USP28-207ENST00000538475 FBXO22Q8NEZ5 403 aa10.45□□□□□ -0.74
USP28-207ENST00000538475 LCE2DQ5TA82 110 aaPredicted RBP10.44□□□□□ -0.74
USP28-207ENST00000538475 PCDH10Q9P2E7 1040 aa10.43□□□□□ -0.74
USP28-207ENST00000538475 MICALL2Q8IY33 904 aa10.41□□□□□ -0.74
USP28-207ENST00000538475 TMEM121BQ9BXQ6 578 aaPredicted RBP10.39□□□□□ -0.75
USP28-207ENST00000538475 DNAJC5Q9H3Z4 198 aa10.39□□□□□ -0.75
USP28-207ENST00000538475 RYDENQ9NUL5 291 aaKnown RBP10.38□□□□□ -0.75
USP28-207ENST00000538475 NKX1-1Q15270 411 aaPredicted RBP10.37□□□□□ -0.75
USP28-207ENST00000538475 ACIN1Q9UKV3 1341 aaKnown RBP10.34□□□□□ -0.75
USP28-207ENST00000538475 PPP1R37O75864 691 aa10.33□□□□□ -0.76
USP28-207ENST00000538475 SNPHO15079 494 aa10.32□□□□□ -0.76
USP28-207ENST00000538475 CENPBP07199 599 aaPredicted RBP10.32□□□□□ -0.76
USP28-207ENST00000538475 BBXQ8WY36 941 aaPredicted RBP10.29□□□□□ -0.76
USP28-207ENST00000538475 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.27□□□□□ -0.77
USP28-207ENST00000538475 GTPBP6O43824 516 aaPredicted RBP10.26□□□□□ -0.77
USP28-207ENST00000538475 TMEM92Q6UXU6 159 aa10.25□□□□□ -0.77
USP28-207ENST00000538475 ST18O60284 1047 aa10.24□□□□□ -0.77
USP28-207ENST00000538475 TMC2Q8TDI7 906 aa10.24□□□□□ -0.77
USP28-207ENST00000538475 CDAN1Q8IWY9 1227 aa10.22□□□□□ -0.77
USP28-207ENST00000538475 C2orf72A6NCS6 295 aa10.2□□□□□ -0.78
USP28-207ENST00000538475 DOK7Q18PE1 504 aa10.2□□□□□ -0.78
USP28-207ENST00000538475 ZNF710Q8N1W2 664 aa10.2□□□□□ -0.78
USP28-207ENST00000538475 SPRYD3Q8NCJ5 442 aa10.19□□□□□ -0.78
USP28-207ENST00000538475 RIMBP2O15034 1052 aa10.18□□□□□ -0.78
USP28-207ENST00000538475 CFAP44Q96MT7 982 aa10.17□□□□□ -0.78
USP28-207ENST00000538475 CLSPNQ9HAW4 1339 aa10.16□□□□□ -0.78
USP28-207ENST00000538475 LOC105371045A0A1W2PR82 267 aa10.16□□□□□ -0.78
USP28-207ENST00000538475 KIF3CO14782 793 aa10.16□□□□□ -0.78
USP28-207ENST00000538475 HOXB3P14651 431 aaPredicted RBP10.15□□□□□ -0.78
USP28-207ENST00000538475 PAXIP1Q6ZW49 1069 aaPredicted RBP10.15□□□□□ -0.78
USP28-207ENST00000538475 NEUROD1Q13562 356 aa10.14□□□□□ -0.79
USP28-207ENST00000538475 GPHNQ9NQX3 736 aaPredicted RBP10.13□□□□□ -0.79
USP28-207ENST00000538475 GTF3C3Q9Y5Q9 886 aa10.12□□□□□ -0.79
USP28-207ENST00000538475 ABCC9O60706 1549 aa10.12□□□□□ -0.79
USP28-207ENST00000538475 PDE4AP27815 886 aa10.11□□□□□ -0.79
USP28-207ENST00000538475 MARVELD3Q96A59 401 aa10.11□□□□□ -0.79
USP28-207ENST00000538475 EMP3P54852 163 aa10.09□□□□□ -0.79
USP28-207ENST00000538475 ZSWIM6Q9HCJ5 1215 aa10.09□□□□□ -0.79
USP28-207ENST00000538475 FOXK1P85037 733 aa10.08□□□□□ -0.8
USP28-207ENST00000538475 PLPP6Q8IY26 295 aa10.08□□□□□ -0.8
USP28-207ENST00000538475 DSG2Q14126 1118 aa10.07□□□□□ -0.8
USP28-207ENST00000538475 CRISPLD2Q9H0B8 497 aa10.07□□□□□ -0.8
USP28-207ENST00000538475 HOXB1P14653 301 aaPredicted RBP10.06□□□□□ -0.8
USP28-207ENST00000538475 DIEXFQ68CQ4 756 aaKnown RBP10.06□□□□□ -0.8
USP28-207ENST00000538475 LARP6Q9BRS8 491 aaKnown RBP10.06□□□□□ -0.8
USP28-207ENST00000538475 NCKAP5LQ9HCH0 1330 aa10.05□□□□□ -0.8
USP28-207ENST00000538475 ARSIQ5FYB1 569 aa10.04□□□□□ -0.8
USP28-207ENST00000538475 PPP1R15BQ5SWA1 713 aa10.04□□□□□ -0.8
USP28-207ENST00000538475 CADPS2Q86UW7 1296 aa10.04□□□□□ -0.8
USP28-207ENST00000538475 DDX27Q96GQ7 796 aaKnown RBP10.03□□□□□ -0.8
USP28-207ENST00000538475 RB1CC1Q8TDY2 1594 aa10.02□□□□□ -0.81
USP28-207ENST00000538475 FAM205CA6NFA0 338 aa10.02□□□□□ -0.81
USP28-207ENST00000538475 SLC34A2O95436 690 aa10.02□□□□□ -0.81
USP28-207ENST00000538475 GPR153Q6NV75 609 aa10.02□□□□□ -0.81
USP28-207ENST00000538475 ERBB3P21860 1342 aa10.01□□□□□ -0.81
USP28-207ENST00000538475 PCDHGA4Q9Y5G9 962 aa10□□□□□ -0.81
USP28-207ENST00000538475 TBC1D12O60347 775 aa9.99□□□□□ -0.81
USP28-207ENST00000538475 KHSRPQ92945 711 aaKnown RBP eCLIP9.99□□□□□ -0.81
USP28-207ENST00000538475 NUDT7P0C024 238 aa9.97□□□□□ -0.81
USP28-207ENST00000538475 SPNS2Q8IVW8 549 aa9.97□□□□□ -0.81
USP28-207ENST00000538475 HS3ST6Q96QI5 342 aa9.97□□□□□ -0.81
USP28-207ENST00000538475 WRNQ14191 1432 aaPredicted RBP eCLIP9.97□□□□□ -0.81
USP28-207ENST00000538475 MMRN1Q13201 1228 aa9.96□□□□□ -0.82
USP28-207ENST00000538475 MFSD10Q14728 455 aa9.96□□□□□ -0.82
USP28-207ENST00000538475 PTCD2Q8WV60 388 aaKnown RBP9.96□□□□□ -0.82
USP28-207ENST00000538475 UPF1Q92900 1129 aaKnown RBP eCLIP9.96□□□□□ -0.82
USP28-207ENST00000538475 CCER1Q8TC90 406 aaPredicted RBP9.95□□□□□ -0.82
USP28-207ENST00000538475 VARS2Q5ST30 1063 aaKnown RBP9.94□□□□□ -0.82
USP28-207ENST00000538475 ZNF316A6NFI3 1004 aaPredicted RBP9.93□□□□□ -0.82
USP28-207ENST00000538475 WDR70Q9NW82 654 aa9.93□□□□□ -0.82
USP28-207ENST00000538475 OXER1Q8TDS5 423 aa9.91□□□□□ -0.82
USP28-207ENST00000538475 POTEB3A0JP26 581 aa9.9□□□□□ -0.82
USP28-207ENST00000538475 POTEBQ6S5H4 581 aa9.9□□□□□ -0.82
USP28-207ENST00000538475 TSHZ2Q9NRE2 1034 aa9.9□□□□□ -0.82
USP28-207ENST00000538475 MAP3K9P80192 1104 aa9.89□□□□□ -0.83
USP28-207ENST00000538475 PLCB2Q00722 1185 aa9.89□□□□□ -0.83
USP28-207ENST00000538475 LHX6Q9UPM6 363 aa9.89□□□□□ -0.83
USP28-207ENST00000538475 RSF1Q96T23 1441 aaPredicted RBP9.89□□□□□ -0.83
USP28-207ENST00000538475 KRTAP3-3Q9BYR6 98 aa9.86□□□□□ -0.83
USP28-207ENST00000538475 KRTAP3-2Q9BYR7 98 aa9.86□□□□□ -0.83
USP28-207ENST00000538475 PSDA5PKW4 1024 aaPredicted RBP9.85□□□□□ -0.83
USP28-207ENST00000538475 ANP32EQ9BTT0 268 aa9.85□□□□□ -0.83
USP28-207ENST00000538475 EMILIN3Q9NT22 766 aa9.85□□□□□ -0.83
USP28-207ENST00000538475 ZNF687Q8N1G0 1237 aa9.84□□□□□ -0.83
USP28-207ENST00000538475 EVI5O60447 810 aa9.83□□□□□ -0.84
USP28-207ENST00000538475 CAMK2BQ13554 666 aa9.83□□□□□ -0.84
USP28-207ENST00000538475 KDM4FA0A1W2PPD8 638 aa9.82□□□□□ -0.84
USP28-207ENST00000538475 E2F4Q16254 413 aa9.82□□□□□ -0.84
USP28-207ENST00000538475 DPYSL4O14531 572 aa9.8□□□□□ -0.84
USP28-207ENST00000538475 HAP1P54257 671 aaPredicted RBP9.8□□□□□ -0.84
USP28-207ENST00000538475 PPP4R3BQ5MIZ7 849 aa9.8□□□□□ -0.84
USP28-207ENST00000538475 ZNF454Q8N9F8 522 aa9.78□□□□□ -0.84
USP28-207ENST00000538475 EEA1Q15075 1411 aa9.77□□□□□ -0.85
USP28-207ENST00000538475 BCL11AQ9H165 835 aa9.77□□□□□ -0.85
USP28-207ENST00000538475 ANO8Q9HCE9 1232 aaPredicted RBP9.76□□□□□ -0.85
USP28-207ENST00000538475 EIF4G1Q04637 1599 aaKnown RBP9.75□□□□□ -0.85
USP28-207ENST00000538475 PBX2P40425 430 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms