RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 CSB-PGBD3P0DP91 1061 aa14.83□□□□□ -0.03
PTPRK-221ENST00000532331 LAS1LQ9Y4W2 734 aaKnown RBP14.83□□□□□ -0.03
PTPRK-221ENST00000532331 U2SURPO15042 1029 aaKnown RBP14.83□□□□□ -0.04
PTPRK-221ENST00000532331 PNNQ9H307 717 aaKnown RBP14.82□□□□□ -0.04
PTPRK-221ENST00000532331 MIER1Q8N108 512 aa14.82□□□□□ -0.04
PTPRK-221ENST00000532331 NEUROD2Q15784 382 aa14.8□□□□□ -0.04
PTPRK-221ENST00000532331 SETD5Q9C0A6 1442 aa14.8□□□□□ -0.04
PTPRK-221ENST00000532331 NUTM2DQ5VT03 806 aaPredicted RBP14.79□□□□□ -0.04
PTPRK-221ENST00000532331 CC2D1BQ5T0F9 858 aaKnown RBP14.78□□□□□ -0.04
PTPRK-221ENST00000532331 GRIN2BQ13224 1484 aa14.78□□□□□ -0.04
PTPRK-221ENST00000532331 FOXD1Q16676 465 aa14.77□□□□□ -0.04
PTPRK-221ENST00000532331 NESP48681 1621 aa14.77□□□□□ -0.04
PTPRK-221ENST00000532331 MORC1Q86VD1 984 aa14.76□□□□□ -0.05
PTPRK-221ENST00000532331 MPHOSPH9Q99550 1183 aa14.76□□□□□ -0.05
PTPRK-221ENST00000532331 IFT140Q96RY7 1462 aa14.75□□□□□ -0.05
PTPRK-221ENST00000532331 NGDNQ8NEJ9 315 aaKnown RBP14.75□□□□□ -0.05
PTPRK-221ENST00000532331 IGF1RP08069 1367 aa14.73□□□□□ -0.05
PTPRK-221ENST00000532331 IRX6P78412 446 aaPredicted RBP14.72□□□□□ -0.05
PTPRK-221ENST00000532331 DNAJC5BQ9UF47 199 aa14.72□□□□□ -0.05
PTPRK-221ENST00000532331 EIF3AQ14152 1382 aaKnown RBP14.71□□□□□ -0.05
PTPRK-221ENST00000532331 RTF1Q92541 710 aaKnown RBP14.71□□□□□ -0.05
PTPRK-221ENST00000532331 ROCK2O75116 1388 aaKnown RBP14.71□□□□□ -0.06
PTPRK-221ENST00000532331 FTSJ3Q8IY81 847 aaKnown RBP14.69□□□□□ -0.06
PTPRK-221ENST00000532331 PRG4Q92954 1404 aaPredicted RBP14.69□□□□□ -0.06
PTPRK-221ENST00000532331 TIMELESSQ9UNS1 1208 aa14.68□□□□□ -0.06
PTPRK-221ENST00000532331 CFTRP13569 1480 aa14.68□□□□□ -0.06
PTPRK-221ENST00000532331 NUTM2FA1L443 756 aa14.67□□□□□ -0.06
PTPRK-221ENST00000532331 TERF2IPQ9NYB0 399 aa14.67□□□□□ -0.06
PTPRK-221ENST00000532331 HMGXB3Q12766 1538 aa14.66□□□□□ -0.06
PTPRK-221ENST00000532331 VGFO15240 615 aaPredicted RBP14.66□□□□□ -0.06
PTPRK-221ENST00000532331 GOLGA2Q08379 1002 aa14.65□□□□□ -0.06
PTPRK-221ENST00000532331 SENP3-EIF4A1A0A087X0R7 540 aa14.65□□□□□ -0.06
PTPRK-221ENST00000532331 MEX3CQ5U5Q3 659 aaKnown RBP14.65□□□□□ -0.06
PTPRK-221ENST00000532331 RUSC2Q8N2Y8 1516 aa14.63□□□□□ -0.07
PTPRK-221ENST00000532331 UACAQ9BZF9 1416 aa14.63□□□□□ -0.07
PTPRK-221ENST00000532331 PRDM2Q13029 1718 aa14.63□□□□□ -0.07
PTPRK-221ENST00000532331 OS9Q13438 667 aaPredicted RBP14.62□□□□□ -0.07
PTPRK-221ENST00000532331 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.61□□□□□ -0.07
PTPRK-221ENST00000532331 RAB3GAP2Q9H2M9 1393 aa14.61□□□□□ -0.07
PTPRK-221ENST00000532331 ZNF330Q9Y3S2 320 aaPredicted RBP14.61□□□□□ -0.07
PTPRK-221ENST00000532331 TRAK1Q9UPV9 953 aa14.6□□□□□ -0.07
PTPRK-221ENST00000532331 BECN1Q14457 450 aa14.6□□□□□ -0.07
PTPRK-221ENST00000532331 CHMP4BQ9H444 224 aaKnown RBP14.6□□□□□ -0.07
PTPRK-221ENST00000532331 NBR1Q14596 966 aa14.6□□□□□ -0.07
PTPRK-221ENST00000532331 CCDC144AA2RUR9 1427 aa14.6□□□□□ -0.07
PTPRK-221ENST00000532331 TMX4Q9H1E5 349 aaPredicted RBP14.6□□□□□ -0.07
PTPRK-221ENST00000532331 AMPHP49418 695 aa14.59□□□□□ -0.07
PTPRK-221ENST00000532331 SYNJ2O15056 1496 aa14.59□□□□□ -0.07
PTPRK-221ENST00000532331 DDRGK1Q96HY6 314 aa14.59□□□□□ -0.07
PTPRK-221ENST00000532331 SNAPC4Q5SXM2 1469 aa14.59□□□□□ -0.07
PTPRK-221ENST00000532331 TOPBP1Q92547 1522 aa14.59□□□□□ -0.07
PTPRK-221ENST00000532331 EVA1CP58658 441 aa14.58□□□□□ -0.07
PTPRK-221ENST00000532331 HSPA5P11021 654 aaKnown RBP14.58□□□□□ -0.08
PTPRK-221ENST00000532331 FRAT1Q92837 279 aaPredicted RBP14.57□□□□□ -0.08
PTPRK-221ENST00000532331 MS4A1P11836 297 aa14.56□□□□□ -0.08
PTPRK-221ENST00000532331 ATF3P18847 181 aa14.56□□□□□ -0.08
PTPRK-221ENST00000532331 CASC1Q6TDU7 716 aa14.55□□□□□ -0.08
PTPRK-221ENST00000532331 LTV1Q96GA3 475 aaPredicted RBP14.55□□□□□ -0.08
PTPRK-221ENST00000532331 KTN1Q86UP2 1357 aaKnown RBP14.55□□□□□ -0.08
PTPRK-221ENST00000532331 EIF5BO60841 1220 aaKnown RBP14.55□□□□□ -0.08
PTPRK-221ENST00000532331 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.55□□□□□ -0.081e-6■■■□□ 16.3
PTPRK-221ENST00000532331 U2AF1L5P0DN76 240 aaPredicted RBP14.54□□□□□ -0.08
PTPRK-221ENST00000532331 U2AF1Q01081 240 aaKnown RBP eCLIP14.54□□□□□ -0.08
PTPRK-221ENST00000532331 NCLP19338 710 aaKnown RBP14.54□□□□□ -0.08
PTPRK-221ENST00000532331 ARHGAP5Q13017 1502 aa14.53□□□□□ -0.08
PTPRK-221ENST00000532331 SUPT16HQ9Y5B9 1047 aaKnown RBP14.53□□□□□ -0.08
PTPRK-221ENST00000532331 CALD1Q05682 793 aaKnown RBP14.53□□□□□ -0.08
PTPRK-221ENST00000532331 MYOM3Q5VTT5 1437 aa14.53□□□□□ -0.08
PTPRK-221ENST00000532331 CHMP4AQ9BY43 222 aa14.52□□□□□ -0.08
PTPRK-221ENST00000532331 POLA1P09884 1462 aaPredicted RBP14.51□□□□□ -0.09
PTPRK-221ENST00000532331 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
PTPRK-221ENST00000532331 PSME1Q06323 249 aa14.51□□□□□ -0.09
PTPRK-221ENST00000532331 GOLGA6L22H0YM25 854 aa14.5□□□□□ -0.09
PTPRK-221ENST00000532331 L3MBTL2Q969R5 705 aa14.5□□□□□ -0.09
PTPRK-221ENST00000532331 AFAP1Q8N556 730 aa14.49□□□□□ -0.09
PTPRK-221ENST00000532331 EVC2Q86UK5 1308 aa14.48□□□□□ -0.09
PTPRK-221ENST00000532331 DNMBPQ6XZF7 1577 aa14.48□□□□□ -0.09
PTPRK-221ENST00000532331 MINK1Q8N4C8 1332 aaPredicted RBP14.48□□□□□ -0.09
PTPRK-221ENST00000532331 PHF23Q9BUL5 403 aaPredicted RBP14.48□□□□□ -0.09
PTPRK-221ENST00000532331 KIF15Q9NS87 1388 aa14.48□□□□□ -0.09
PTPRK-221ENST00000532331 ANP32EQ9BTT0 268 aa14.48□□□□□ -0.09
PTPRK-221ENST00000532331 CDK11BP21127 795 aaKnown RBP14.47□□□□□ -0.09
PTPRK-221ENST00000532331 POGZQ7Z3K3 1410 aa14.47□□□□□ -0.09
PTPRK-221ENST00000532331 COG3Q96JB2 828 aa14.47□□□□□ -0.09
PTPRK-221ENST00000532331 ZNF644Q9H582 1327 aaPredicted RBP14.46□□□□□ -0.1
PTPRK-221ENST00000532331 CUX1P39880 1505 aa14.45□□□□□ -0.1
PTPRK-221ENST00000532331 PPP4R2Q9NY27 417 aa14.45□□□□□ -0.1
PTPRK-221ENST00000532331 BICRAQ9NZM4 1560 aa14.44□□□□□ -0.1
PTPRK-221ENST00000532331 MSH5O43196 834 aa14.44□□□□□ -0.1
PTPRK-221ENST00000532331 THEMISQ8N1K5 641 aaPredicted RBP14.44□□□□□ -0.1
PTPRK-221ENST00000532331 TXNDC2Q86VQ3 553 aa14.43□□□□□ -0.1
PTPRK-221ENST00000532331 GTF2E1P29083 439 aaPredicted RBP14.43□□□□□ -0.1
PTPRK-221ENST00000532331 RALBP1Q15311 655 aa14.43□□□□□ -0.1
PTPRK-221ENST00000532331 STK31Q9BXU1 1019 aa14.43□□□□□ -0.1
PTPRK-221ENST00000532331 G3V3G9 751 aa14.42□□□□□ -0.1
PTPRK-221ENST00000532331 DCAF8Q5TAQ9 597 aa14.42□□□□□ -0.1
PTPRK-221ENST00000532331 PROSER2Q86WR7 435 aaPredicted RBP14.42□□□□□ -0.1
PTPRK-221ENST00000532331 C1orf141Q5JVX7 400 aa14.41□□□□□ -0.1
PTPRK-221ENST00000532331 KCNJ4P48050 445 aa14.41□□□□□ -0.1
PTPRK-221ENST00000532331 LMOD3Q0VAK6 560 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms