RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	PPP1R37	O75864	691 aa		5.89	□□□□□ -1.47
CD44-212	ENST00000524922		G3V3G9	751 aa		5.88	□□□□□ -1.47
CD44-212	ENST00000524922	EMP3	P54852	163 aa		5.88	□□□□□ -1.47
CD44-212	ENST00000524922	GPR153	Q6NV75	609 aa		5.88	□□□□□ -1.47
CD44-212	ENST00000524922	HS3ST6	Q96QI5	342 aa		5.88	□□□□□ -1.47
CD44-212	ENST00000524922	HS6ST3	Q8IZP7	471 aa		5.87	□□□□□ -1.47
CD44-212	ENST00000524922	DNAJC5	Q9H3Z4	198 aa		5.87	□□□□□ -1.47
CD44-212	ENST00000524922	NKX1-1	Q15270	411 aa	Predicted RBP	5.86	□□□□□ -1.47
CD44-212	ENST00000524922	DOK7	Q18PE1	504 aa		5.86	□□□□□ -1.47
CD44-212	ENST00000524922	FAM205C	A6NFA0	338 aa		5.85	□□□□□ -1.47
CD44-212	ENST00000524922	SPNS2	Q8IVW8	549 aa		5.85	□□□□□ -1.47
CD44-212	ENST00000524922	ZSWIM6	Q9HCJ5	1215 aa		5.85	□□□□□ -1.47
CD44-212	ENST00000524922	C2orf72	A6NCS6	295 aa		5.84	□□□□□ -1.47
CD44-212	ENST00000524922	MMRN1	Q13201	1228 aa		5.81	□□□□□ -1.48
CD44-212	ENST00000524922	ZNF710	Q8N1W2	664 aa		5.81	□□□□□ -1.48
CD44-212	ENST00000524922	KHSRP	Q92945	711 aa	Known RBP eCLIP	5.81	□□□□□ -1.48
CD44-212	ENST00000524922	KDM4F	A0A1W2PPD8	638 aa		5.8	□□□□□ -1.48
CD44-212	ENST00000524922	SLC34A2	O95436	690 aa		5.8	□□□□□ -1.48
CD44-212	ENST00000524922	ARSI	Q5FYB1	569 aa		5.8	□□□□□ -1.48
CD44-212	ENST00000524922	RIMBP2	O15034	1052 aa		5.78	□□□□□ -1.48
CD44-212	ENST00000524922	CHGA	P10645	457 aa	Known RBP	5.78	□□□□□ -1.48
CD44-212	ENST00000524922	VARS2	Q5ST30	1063 aa	Known RBP	5.78	□□□□□ -1.48
CD44-212	ENST00000524922	ERBB3	P21860	1342 aa		5.77	□□□□□ -1.49
CD44-212	ENST00000524922	ZNF687	Q8N1G0	1237 aa		5.76	□□□□□ -1.49
CD44-212	ENST00000524922	ZNF316	A6NFI3	1004 aa	Predicted RBP	5.75	□□□□□ -1.49
CD44-212	ENST00000524922	FOXK1	P85037	733 aa		5.75	□□□□□ -1.49
CD44-212	ENST00000524922	POTEE	Q6S8J3	1075 aa		5.75	□□□□□ -1.49
CD44-212	ENST00000524922	GPHN	Q9NQX3	736 aa	Predicted RBP	5.75	□□□□□ -1.49
CD44-212	ENST00000524922	PCDHGA4	Q9Y5G9	962 aa		5.75	□□□□□ -1.49
CD44-212	ENST00000524922	GTPBP6	O43824	516 aa	Predicted RBP	5.74	□□□□□ -1.49
CD44-212	ENST00000524922	NUDT7	P0C024	238 aa		5.73	□□□□□ -1.49
CD44-212	ENST00000524922	DSG2	Q14126	1118 aa		5.73	□□□□□ -1.49
CD44-212	ENST00000524922	TMC2	Q8TDI7	906 aa		5.73	□□□□□ -1.49
CD44-212	ENST00000524922	PTCD2	Q8WV60	388 aa	Known RBP	5.73	□□□□□ -1.49
CD44-212	ENST00000524922	CRISPLD2	Q9H0B8	497 aa		5.73	□□□□□ -1.49
CD44-212	ENST00000524922	NCKAP5L	Q9HCH0	1330 aa		5.72	□□□□□ -1.49
CD44-212	ENST00000524922	PLPP6	Q8IY26	295 aa		5.71	□□□□□ -1.5
CD44-212	ENST00000524922	LHX6	Q9UPM6	363 aa		5.71	□□□□□ -1.5
CD44-212	ENST00000524922	OXER1	Q8TDS5	423 aa		5.68	□□□□□ -1.5
CD44-212	ENST00000524922	LSM11	P83369	360 aa	Known RBP eCLIP	5.66	□□□□□ -1.5
CD44-212	ENST00000524922	MFSD10	Q14728	455 aa		5.65	□□□□□ -1.5
CD44-212	ENST00000524922	CADPS2	Q86UW7	1296 aa		5.65	□□□□□ -1.5
CD44-212	ENST00000524922	RYDEN	Q9NUL5	291 aa	Known RBP	5.65	□□□□□ -1.5
CD44-212	ENST00000524922	AXIN2	Q9Y2T1	843 aa		5.65	□□□□□ -1.5
CD44-212	ENST00000524922	PBX2	P40425	430 aa		5.64	□□□□□ -1.51
CD44-212	ENST00000524922	PPP1R15B	Q5SWA1	713 aa		5.64	□□□□□ -1.51
CD44-212	ENST00000524922	RNF166	Q96A37	237 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-212	ENST00000524922	ANO8	Q9HCE9	1232 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-212	ENST00000524922	MYT1L	Q9UL68	1186 aa		5.62	□□□□□ -1.51
CD44-212	ENST00000524922	DMRTA1	Q5VZB9	504 aa		5.61	□□□□□ -1.51
CD44-212	ENST00000524922	ANKRD13D	Q6ZTN6	518 aa		5.61	□□□□□ -1.51
CD44-212	ENST00000524922	EMILIN3	Q9NT22	766 aa		5.61	□□□□□ -1.51
CD44-212	ENST00000524922	PSD	A5PKW4	1024 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-212	ENST00000524922	ARHGAP33	O14559	1287 aa		5.6	□□□□□ -1.51
CD44-212	ENST00000524922	HR	O43593	1189 aa		5.6	□□□□□ -1.51
CD44-212	ENST00000524922	PDE4A	P27815	886 aa		5.6	□□□□□ -1.51
CD44-212	ENST00000524922	PTGER2	P43116	358 aa		5.6	□□□□□ -1.51
CD44-212	ENST00000524922	PSEN2	P49810	448 aa		5.59	□□□□□ -1.51
CD44-212	ENST00000524922	UPF1	Q92900	1129 aa	Known RBP eCLIP	5.59	□□□□□ -1.51
CD44-212	ENST00000524922	LARP6	Q9BRS8	491 aa	Known RBP	5.59	□□□□□ -1.51
CD44-212	ENST00000524922	FOSB	P53539	338 aa		5.58	□□□□□ -1.52
CD44-212	ENST00000524922	ADGRD1	Q6QNK2	874 aa		5.58	□□□□□ -1.52
CD44-212	ENST00000524922	RTN4	Q9NQC3	1192 aa	Known RBP	5.58	□□□□□ -1.52
CD44-212	ENST00000524922	TK2	O00142	265 aa		5.57	□□□□□ -1.52
CD44-212	ENST00000524922	TBC1D12	O60347	775 aa		5.57	□□□□□ -1.52
CD44-212	ENST00000524922	CAMK2B	Q13554	666 aa		5.57	□□□□□ -1.52
CD44-212	ENST00000524922	DDX27	Q96GQ7	796 aa	Known RBP	5.57	□□□□□ -1.52
CD44-212	ENST00000524922	PPP4R3B	Q5MIZ7	849 aa		5.56	□□□□□ -1.52
CD44-212	ENST00000524922	BCL2L12	Q9HB09	334 aa		5.56	□□□□□ -1.52
CD44-212	ENST00000524922	EVI5	O60447	810 aa		5.55	□□□□□ -1.52
CD44-212	ENST00000524922	BBX	Q8WY36	941 aa	Predicted RBP	5.55	□□□□□ -1.52
CD44-212	ENST00000524922	DCAF8L2	P0C7V8	631 aa		5.54	□□□□□ -1.52
CD44-212	ENST00000524922	JPH4	Q96JJ6	628 aa		5.54	□□□□□ -1.52
CD44-212	ENST00000524922	ZNF454	Q8N9F8	522 aa		5.53	□□□□□ -1.52
CD44-212	ENST00000524922	SLC4A5	Q9BY07	1137 aa		5.53	□□□□□ -1.52
CD44-212	ENST00000524922	ADAM33	Q9BZ11	813 aa		5.53	□□□□□ -1.52
CD44-212	ENST00000524922	VPS9D1	Q9Y2B5	631 aa		5.53	□□□□□ -1.52
CD44-212	ENST00000524922	BHMG1	C9JSJ3	638 aa	Predicted RBP	5.52	□□□□□ -1.53
CD44-212	ENST00000524922	AMER1	Q5JTC6	1135 aa	Predicted RBP	5.52	□□□□□ -1.53
CD44-212	ENST00000524922	KCNK17	Q96T54	332 aa		5.52	□□□□□ -1.53
CD44-212	ENST00000524922	PCDHGA10	Q9Y5H3	936 aa		5.52	□□□□□ -1.53
CD44-212	ENST00000524922	ZBED2	Q9BTP6	218 aa		5.51	□□□□□ -1.53
CD44-212	ENST00000524922	ZDHHC16	Q969W1	377 aa		5.5	□□□□□ -1.53
CD44-212	ENST00000524922	DPYSL4	O14531	572 aa		5.48	□□□□□ -1.53
CD44-212	ENST00000524922	MAP3K9	P80192	1104 aa		5.48	□□□□□ -1.53
CD44-212	ENST00000524922	COL9A1	P20849	921 aa		5.47	□□□□□ -1.53
CD44-212	ENST00000524922	PTPRE	P23469	700 aa		5.47	□□□□□ -1.53
CD44-212	ENST00000524922	PHF14	O94880	888 aa		5.46	□□□□□ -1.54
CD44-212	ENST00000524922	SPRYD3	Q8NCJ5	442 aa		5.46	□□□□□ -1.54
CD44-212	ENST00000524922	ARIH1	Q9Y4X5	557 aa	Predicted RBP	5.46	□□□□□ -1.54
CD44-212	ENST00000524922	PDIA6	Q15084	440 aa		5.45	□□□□□ -1.54
CD44-212	ENST00000524922	HCST	Q9UBK5	93 aa		5.45	□□□□□ -1.54
CD44-212	ENST00000524922	PPP1R3G	B7ZBB8	358 aa		5.44	□□□□□ -1.54
CD44-212	ENST00000524922	PRIM1	P49642	420 aa	Known RBP	5.44	□□□□□ -1.54
CD44-212	ENST00000524922	PROX2	Q3B8N5	592 aa		5.44	□□□□□ -1.54
CD44-212	ENST00000524922	TYW1B	Q6NUM6	668 aa		5.44	□□□□□ -1.54
CD44-212	ENST00000524922	KCTD12	Q96CX2	325 aa	Known RBP	5.44	□□□□□ -1.54
CD44-212	ENST00000524922	FBXW7	Q969H0	707 aa		5.43	□□□□□ -1.54
CD44-212	ENST00000524922	C6orf132	Q5T0Z8	1188 aa		5.42	□□□□□ -1.54
CD44-212	ENST00000524922	THSD4	Q6ZMP0	1018 aa		5.42	□□□□□ -1.54

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