RNA–Protein interactions for RNA: ENST00000523328.5

PVT1-218, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best)

Gene PVT1, Length 343 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-218ENST00000523328 MYO5CQ9NQX4 1742 aa37.87■■■■□ 3.65
PVT1-218ENST00000523328 HSPA2P54652 639 aa37.86■■■■□ 3.65
PVT1-218ENST00000523328 ARHGAP35Q9NRY4 1499 aa37.85■■■■□ 3.65
PVT1-218ENST00000523328 PLPPR3Q6T4P5 718 aa37.84■■■■□ 3.65
PVT1-218ENST00000523328 UBTFP17480 764 aaKnown RBP37.82■■■■□ 3.64
PVT1-218ENST00000523328 MLECQ14165 292 aa37.82■■■■□ 3.64
PVT1-218ENST00000523328 KIF14Q15058 1648 aa37.81■■■■□ 3.64
PVT1-218ENST00000523328 EHMT2Q96KQ7 1210 aa37.81■■■■□ 3.64
PVT1-218ENST00000523328 ATP1B4Q9UN42 357 aaPredicted RBP37.8■■■■□ 3.64
PVT1-218ENST00000523328 ATP10AO60312 1499 aa37.79■■■■□ 3.64
PVT1-218ENST00000523328 EFCAB2Q5VUJ9 269 aa37.78■■■■□ 3.64
PVT1-218ENST00000523328 ARHGEF12Q9NZN5 1544 aa37.77■■■■□ 3.64
PVT1-218ENST00000523328 C9orf84Q5VXU9 1444 aa37.76■■■■□ 3.63
PVT1-218ENST00000523328 CDK11AQ9UQ88 783 aaPredicted RBP37.75■■■■□ 3.63
PVT1-218ENST00000523328 LRRIQ1Q96JM4 1722 aa37.73■■■■□ 3.63
PVT1-218ENST00000523328 TROQ12816 1431 aaPredicted RBP37.72■■■■□ 3.63
PVT1-218ENST00000523328 ZNF518AQ6AHZ1 1483 aa37.69■■■■□ 3.62
PVT1-218ENST00000523328 KDM5CP41229 1560 aa37.68■■■■□ 3.62
PVT1-218ENST00000523328 ARHGAP5Q13017 1502 aa37.66■■■■□ 3.62
PVT1-218ENST00000523328 PREX1Q8TCU6 1659 aa37.63■■■■□ 3.62
PVT1-218ENST00000523328 CLIP1P30622 1438 aa37.62■■■■□ 3.61
PVT1-218ENST00000523328 AFAP1Q8N556 730 aa37.61■■■■□ 3.61
PVT1-218ENST00000523328 CDC42BPBQ9Y5S2 1711 aa37.61■■■■□ 3.61
PVT1-218ENST00000523328 CEBPAP49715 358 aaPredicted RBP37.57■■■■□ 3.6
PVT1-218ENST00000523328 CHIC1Q5VXU3 224 aa37.57■■■■□ 3.6
PVT1-218ENST00000523328 DIP2CQ9Y2E4 1556 aa37.57■■■■□ 3.6
PVT1-218ENST00000523328 REREQ9P2R6 1566 aa37.54■■■■□ 3.6
PVT1-218ENST00000523328 CERKQ8TCT0 537 aa37.53■■■■□ 3.6
PVT1-218ENST00000523328 PREX2Q70Z35 1606 aa37.51■■■■□ 3.6
PVT1-218ENST00000523328 ABCA6Q8N139 1617 aa37.5■■■■□ 3.59
PVT1-218ENST00000523328 SETD1BQ9UPS6 1966 aaKnown RBP37.49■■■■□ 3.59
PVT1-218ENST00000523328 MLH3Q9UHC1 1453 aa37.49■■■■□ 3.59
PVT1-218ENST00000523328 STRCQ7RTU9 1775 aa37.47■■■■□ 3.59
PVT1-218ENST00000523328 ABCC1P33527 1531 aa37.46■■■■□ 3.59
PVT1-218ENST00000523328 MYT1LQ9UL68 1186 aa37.45■■■■□ 3.59
PVT1-218ENST00000523328 CASKIN1Q8WXD9 1431 aa37.44■■■■□ 3.58
PVT1-218ENST00000523328 ITSN2Q9NZM3 1697 aa37.44■■■■□ 3.58
PVT1-218ENST00000523328 CCDC18Q5T9S5 1454 aa37.44■■■■□ 3.58
PVT1-218ENST00000523328 TRAPPC8Q9Y2L5 1435 aa37.44■■■■□ 3.58
PVT1-218ENST00000523328 UHRF1BP1Q6BDS2 1440 aa37.41■■■■□ 3.58
PVT1-218ENST00000523328 AGLP35573 1532 aa37.41■■■■□ 3.58
PVT1-218ENST00000523328 C3P01024 1663 aa37.41■■■■□ 3.58
PVT1-218ENST00000523328 CDC42BPAQ5VT25 1732 aa37.39■■■■□ 3.58
PVT1-218ENST00000523328 KIDINS220Q9ULH0 1771 aa37.37■■■■□ 3.57
PVT1-218ENST00000523328 DMRT2Q9Y5R5 561 aa37.32■■■■□ 3.56
PVT1-218ENST00000523328 FYCO1Q9BQS8 1478 aa37.27■■■■□ 3.56
PVT1-218ENST00000523328 SAMD9LQ8IVG5 1584 aa37.24■■■■□ 3.55
PVT1-218ENST00000523328 ESF1Q9H501 851 aaKnown RBP37.23■■■■□ 3.55
PVT1-218ENST00000523328 PTPRTO14522 1441 aa37.2■■■■□ 3.55
PVT1-218ENST00000523328 CNTLNQ9NXG0 1405 aa37.19■■■■□ 3.54
PVT1-218ENST00000523328 SYCP2Q9BX26 1530 aa37.17■■■■□ 3.54
PVT1-218ENST00000523328 GPATCH8Q9UKJ3 1502 aaKnown RBP37.17■■■■□ 3.54
PVT1-218ENST00000523328 ZNF777Q9ULD5 760 aaPredicted RBP37.15■■■■□ 3.54
PVT1-218ENST00000523328 MROH2AA6NES4 1674 aa37.14■■■■□ 3.54
PVT1-218ENST00000523328 SUPT6HQ7KZ85 1726 aaKnown RBP37.1■■■■□ 3.53
PVT1-218ENST00000523328 NCOA1Q15788 1441 aa37.09■■■■□ 3.53
PVT1-218ENST00000523328 HNRNPMP52272 730 aaKnown RBP eCLIP37.08■■■■□ 3.536e-7■■■□□ 16.1
PVT1-218ENST00000523328 SPAG9O60271 1321 aaKnown RBP37.08■■■■□ 3.53
PVT1-218ENST00000523328 NPATQ14207 1427 aa37.07■■■■□ 3.52
PVT1-218ENST00000523328 LTBP4Q8N2S1 1624 aa37.07■■■■□ 3.52
PVT1-218ENST00000523328 ATP7AQ04656 1500 aa37.06■■■■□ 3.52
PVT1-218ENST00000523328 INO80Q9ULG1 1556 aaPredicted RBP37.05■■■■□ 3.52
PVT1-218ENST00000523328 KIAA1107Q9UPP5 1409 aa37.05■■■■□ 3.52
PVT1-218ENST00000523328 PLXNC1O60486 1568 aa37.04■■■■□ 3.52
PVT1-218ENST00000523328 ZMYM3Q14202 1370 aa37.04■■■■□ 3.52
PVT1-218ENST00000523328 PLEKHH2Q8IVE3 1493 aa37.01■■■■□ 3.52
PVT1-218ENST00000523328 CAMSAP1Q5T5Y3 1602 aa37■■■■□ 3.51
PVT1-218ENST00000523328 CFDP1Q9UEE9 299 aaPredicted RBP36.99■■■■□ 3.51
PVT1-218ENST00000523328 CLTCQ00610 1675 aaKnown RBP36.99■■■■□ 3.51
PVT1-218ENST00000523328 CCNB3Q8WWL7 1395 aa36.97■■■■□ 3.51
PVT1-218ENST00000523328 A2MP01023 1474 aa36.96■■■■□ 3.51
PVT1-218ENST00000523328 IQSEC2Q5JU85 1478 aa36.94■■■■□ 3.5
PVT1-218ENST00000523328 ZNF142P52746 1687 aaPredicted RBP36.92■■■■□ 3.5
PVT1-218ENST00000523328 MTUS2Q5JR59 1369 aa36.91■■■■□ 3.5
PVT1-218ENST00000523328 DISP3Q9P2K9 1392 aa36.91■■■■□ 3.5
PVT1-218ENST00000523328 MYO3AQ8NEV4 1616 aa36.9■■■■□ 3.5
PVT1-218ENST00000523328 ADGBQ8N7X0 1667 aa36.88■■■■□ 3.49
PVT1-218ENST00000523328 PTPRKQ15262 1439 aa36.87■■■■□ 3.49
PVT1-218ENST00000523328 TIAM1Q13009 1591 aa36.87■■■■□ 3.49
PVT1-218ENST00000523328 GGT6Q6P531 493 aa36.84■■■■□ 3.49
PVT1-218ENST00000523328 ILDR2Q71H61 639 aa36.84■■■■□ 3.49
PVT1-218ENST00000523328 NCKAP5LQ9HCH0 1330 aa36.84■■■■□ 3.49
PVT1-218ENST00000523328 CEP170BQ9Y4F5 1589 aaPredicted RBP36.83■■■■□ 3.49
PVT1-218ENST00000523328 PLA2R1Q13018 1463 aa36.82■■■■□ 3.49
PVT1-218ENST00000523328 ZNF644Q9H582 1327 aaPredicted RBP36.82■■■■□ 3.48
PVT1-218ENST00000523328 MBD5Q9P267 1494 aa36.82■■■■□ 3.48
PVT1-218ENST00000523328 EHBP1L1Q8N3D4 1523 aa36.8■■■■□ 3.48
PVT1-218ENST00000523328 TCOF1Q13428 1488 aaKnown RBP36.78■■■■□ 3.48
PVT1-218ENST00000523328 PPP6R1Q9UPN7 881 aa36.78■■■■□ 3.48
PVT1-218ENST00000523328 SPATA31D1Q6ZQQ2 1576 aa36.76■■■■□ 3.48
PVT1-218ENST00000523328 PKD2Q13563 968 aa36.76■■■■□ 3.48
PVT1-218ENST00000523328 ZNF335Q9H4Z2 1342 aaPredicted RBP36.76■■■■□ 3.47
PVT1-218ENST00000523328 RTEL1-TNFRSF6BF6WH68 1400 aa36.74■■■■□ 3.47
PVT1-218ENST00000523328 CEP162Q5TB80 1403 aa36.73■■■■□ 3.47
PVT1-218ENST00000523328 DHX29Q7Z478 1369 aaKnown RBP36.68■■■■□ 3.46
PVT1-218ENST00000523328 A2ML1A8K2U0 1454 aa36.66■■■■□ 3.46
PVT1-218ENST00000523328 DNMT1P26358 1616 aaKnown RBP36.66■■■■□ 3.46
PVT1-218ENST00000523328 SOCS7O14512 581 aa36.65■■■■□ 3.46
PVT1-218ENST00000523328 CCDC141Q6ZP82 1450 aa36.6■■■■□ 3.45
PVT1-218ENST00000523328 UBAP1LF5GYI3 381 aa36.58■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms