RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 NLRP6P59044 892 aa8.83□□□□□ -1
HMGB1P19-201ENST00000517578 DOK7Q18PE1 504 aa8.83□□□□□ -1
HMGB1P19-201ENST00000517578 SPNS2Q8IVW8 549 aa8.83□□□□□ -1
HMGB1P19-201ENST00000517578 ZNF710Q8N1W2 664 aa8.82□□□□□ -1
HMGB1P19-201ENST00000517578 KRTAP3-3Q9BYR6 98 aa8.82□□□□□ -1
HMGB1P19-201ENST00000517578 KRTAP3-2Q9BYR7 98 aa8.82□□□□□ -1
HMGB1P19-201ENST00000517578 MMRN1Q13201 1228 aa8.8□□□□□ -1
HMGB1P19-201ENST00000517578 RIMBP2O15034 1052 aa8.76□□□□□ -1.01
HMGB1P19-201ENST00000517578 GPR153Q6NV75 609 aa8.75□□□□□ -1.01
HMGB1P19-201ENST00000517578 ZSWIM6Q9HCJ5 1215 aa8.75□□□□□ -1.01
HMGB1P19-201ENST00000517578 ERBB3P21860 1342 aa8.74□□□□□ -1.01
HMGB1P19-201ENST00000517578 KIF3CO14782 793 aa8.73□□□□□ -1.01
HMGB1P19-201ENST00000517578 MYT1Q01538 1121 aa8.73□□□□□ -1.01
HMGB1P19-201ENST00000517578 VARS2Q5ST30 1063 aaKnown RBP8.71□□□□□ -1.02
HMGB1P19-201ENST00000517578 C2orf72A6NCS6 295 aa8.69□□□□□ -1.02
HMGB1P19-201ENST00000517578 ARSIQ5FYB1 569 aa8.69□□□□□ -1.02
HMGB1P19-201ENST00000517578 PPP1R37O75864 691 aa8.68□□□□□ -1.02
HMGB1P19-201ENST00000517578 KHSRPQ92945 711 aaKnown RBP eCLIP8.68□□□□□ -1.02
HMGB1P19-201ENST00000517578 ZNF687Q8N1G0 1237 aa8.65□□□□□ -1.02
HMGB1P19-201ENST00000517578 HS6ST3Q8IZP7 471 aa8.64□□□□□ -1.03
HMGB1P19-201ENST00000517578 ZNF316A6NFI3 1004 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P19-201ENST00000517578 SLC34A2O95436 690 aa8.6□□□□□ -1.03
HMGB1P19-201ENST00000517578 TMC2Q8TDI7 906 aa8.6□□□□□ -1.03
HMGB1P19-201ENST00000517578 NUDT7P0C024 238 aa8.59□□□□□ -1.03
HMGB1P19-201ENST00000517578 PCDHGA4Q9Y5G9 962 aa8.58□□□□□ -1.04
HMGB1P19-201ENST00000517578 CHGAP10645 457 aaKnown RBP8.57□□□□□ -1.04
HMGB1P19-201ENST00000517578 NKX1-1Q15270 411 aaPredicted RBP8.56□□□□□ -1.04
HMGB1P19-201ENST00000517578 DNAJC5Q9H3Z4 198 aa8.55□□□□□ -1.04
HMGB1P19-201ENST00000517578 LHX6Q9UPM6 363 aa8.55□□□□□ -1.04
HMGB1P19-201ENST00000517578 FOXK1P85037 733 aa8.53□□□□□ -1.04
HMGB1P19-201ENST00000517578 POTEEQ6S8J3 1075 aa8.53□□□□□ -1.04
HMGB1P19-201ENST00000517578 RNF166Q96A37 237 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P19-201ENST00000517578 KDM4FA0A1W2PPD8 638 aa8.52□□□□□ -1.05
HMGB1P19-201ENST00000517578 GPHNQ9NQX3 736 aaPredicted RBP8.52□□□□□ -1.05
HMGB1P19-201ENST00000517578 MYT1LQ9UL68 1186 aa8.52□□□□□ -1.05
HMGB1P19-201ENST00000517578 PTCD2Q8WV60 388 aaKnown RBP8.51□□□□□ -1.05
HMGB1P19-201ENST00000517578 LSM11P83369 360 aaKnown RBP eCLIP8.5□□□□□ -1.05
HMGB1P19-201ENST00000517578 DSG2Q14126 1118 aa8.5□□□□□ -1.05
HMGB1P19-201ENST00000517578 ANKRD13DQ6ZTN6 518 aa8.5□□□□□ -1.05
HMGB1P19-201ENST00000517578 PLPP6Q8IY26 295 aa8.5□□□□□ -1.05
HMGB1P19-201ENST00000517578 PBX2P40425 430 aa8.48□□□□□ -1.05
HMGB1P19-201ENST00000517578 PTGER2P43116 358 aa8.48□□□□□ -1.05
HMGB1P19-201ENST00000517578 AMER1Q5JTC6 1135 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P19-201ENST00000517578 AXIN2Q9Y2T1 843 aa8.48□□□□□ -1.05
HMGB1P19-201ENST00000517578 RTN4Q9NQC3 1192 aaKnown RBP8.47□□□□□ -1.05
HMGB1P19-201ENST00000517578 CRISPLD2Q9H0B8 497 aa8.44□□□□□ -1.06
HMGB1P19-201ENST00000517578 DCAF8L2P0C7V8 631 aa8.43□□□□□ -1.06
HMGB1P19-201ENST00000517578 RYDENQ9NUL5 291 aaKnown RBP8.43□□□□□ -1.06
HMGB1P19-201ENST00000517578 PSDA5PKW4 1024 aaPredicted RBP8.42□□□□□ -1.06
HMGB1P19-201ENST00000517578 NCKAP5LQ9HCH0 1330 aa8.41□□□□□ -1.06
HMGB1P19-201ENST00000517578 GTPBP6O43824 516 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P19-201ENST00000517578 TTBK1Q5TCY1 1321 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P19-201ENST00000517578 ARHGAP33O14559 1287 aa8.4□□□□□ -1.06
HMGB1P19-201ENST00000517578 OXER1Q8TDS5 423 aa8.39□□□□□ -1.07
HMGB1P19-201ENST00000517578 TBC1D12O60347 775 aa8.38□□□□□ -1.07
HMGB1P19-201ENST00000517578 PSEN2P49810 448 aa8.38□□□□□ -1.07
HMGB1P19-201ENST00000517578 PPP1R15BQ5SWA1 713 aa8.38□□□□□ -1.07
HMGB1P19-201ENST00000517578 DMRTA1Q5VZB9 504 aa8.38□□□□□ -1.07
HMGB1P19-201ENST00000517578 ADGRD1Q6QNK2 874 aa8.38□□□□□ -1.07
HMGB1P19-201ENST00000517578 UPF1Q92900 1129 aaKnown RBP eCLIP8.37□□□□□ -1.07
HMGB1P19-201ENST00000517578 PPP4R3BQ5MIZ7 849 aa8.36□□□□□ -1.07
HMGB1P19-201ENST00000517578 TK2O00142 265 aa8.34□□□□□ -1.07
HMGB1P19-201ENST00000517578 HRO43593 1189 aa8.34□□□□□ -1.07
HMGB1P19-201ENST00000517578 PDE4AP27815 886 aa8.34□□□□□ -1.07
HMGB1P19-201ENST00000517578 KCNK17Q96T54 332 aa8.31□□□□□ -1.08
HMGB1P19-201ENST00000517578 LARP6Q9BRS8 491 aaKnown RBP8.31□□□□□ -1.08
HMGB1P19-201ENST00000517578 MFSD10Q14728 455 aa8.3□□□□□ -1.08
HMGB1P19-201ENST00000517578 ZNF454Q8N9F8 522 aa8.3□□□□□ -1.08
HMGB1P19-201ENST00000517578 DDX27Q96GQ7 796 aaKnown RBP8.3□□□□□ -1.08
HMGB1P19-201ENST00000517578 ANO8Q9HCE9 1232 aaPredicted RBP8.29□□□□□ -1.08
HMGB1P19-201ENST00000517578 FOSBP53539 338 aa8.28□□□□□ -1.08
HMGB1P19-201ENST00000517578 CADPS2Q86UW7 1296 aa8.28□□□□□ -1.08
HMGB1P19-201ENST00000517578 BCL2L12Q9HB09 334 aa8.28□□□□□ -1.08
HMGB1P19-201ENST00000517578 EVI5O60447 810 aa8.27□□□□□ -1.09
HMGB1P19-201ENST00000517578 EMILIN3Q9NT22 766 aa8.26□□□□□ -1.09
HMGB1P19-201ENST00000517578 HCSTQ9UBK5 93 aa8.26□□□□□ -1.09
HMGB1P19-201ENST00000517578 VPS9D1Q9Y2B5 631 aa8.26□□□□□ -1.09
HMGB1P19-201ENST00000517578 JPH4Q96JJ6 628 aa8.25□□□□□ -1.09
HMGB1P19-201ENST00000517578 KCNH8Q96L42 1107 aa8.24□□□□□ -1.09
HMGB1P19-201ENST00000517578 SLC4A5Q9BY07 1137 aa8.23□□□□□ -1.09
HMGB1P19-201ENST00000517578 PTPREP23469 700 aa8.22□□□□□ -1.09
HMGB1P19-201ENST00000517578 MAP3K9P80192 1104 aa8.22□□□□□ -1.09
HMGB1P19-201ENST00000517578 KCTD12Q96CX2 325 aaKnown RBP8.22□□□□□ -1.09
HMGB1P19-201ENST00000517578 ADAM33Q9BZ11 813 aa8.22□□□□□ -1.09
HMGB1P19-201ENST00000517578 BHMG1C9JSJ3 638 aaPredicted RBP8.21□□□□□ -1.1
HMGB1P19-201ENST00000517578 ZDHHC16Q969W1 377 aa8.21□□□□□ -1.1
HMGB1P19-201ENST00000517578 ZBED2Q9BTP6 218 aa8.21□□□□□ -1.1
HMGB1P19-201ENST00000517578 PLA2G2EQ9NZK7 142 aa8.21□□□□□ -1.1
HMGB1P19-201ENST00000517578 STAC3Q96MF2 364 aa8.18□□□□□ -1.1
HMGB1P19-201ENST00000517578 PCDHGA10Q9Y5H3 936 aa8.18□□□□□ -1.1
HMGB1P19-201ENST00000517578 CAMK2BQ13554 666 aa8.17□□□□□ -1.1
HMGB1P19-201ENST00000517578 BBXQ8WY36 941 aaPredicted RBP8.15□□□□□ -1.1
HMGB1P19-201ENST00000517578 PPP1R3GB7ZBB8 358 aa8.14□□□□□ -1.11
HMGB1P19-201ENST00000517578 PHF14O94880 888 aa8.13□□□□□ -1.11
HMGB1P19-201ENST00000517578 COL9A1P20849 921 aa8.13□□□□□ -1.11
HMGB1P19-201ENST00000517578 PTPN5P54829 565 aa8.13□□□□□ -1.11
HMGB1P19-201ENST00000517578 THSD4Q6ZMP0 1018 aa8.13□□□□□ -1.11
HMGB1P19-201ENST00000517578 DPYSL4O14531 572 aa8.12□□□□□ -1.11
HMGB1P19-201ENST00000517578 TYW1BQ6NUM6 668 aa8.12□□□□□ -1.11
HMGB1P19-201ENST00000517578 PROX2Q3B8N5 592 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms