RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 MYO5CQ9NQX4 1742 aa26.22■■□□□ 1.79
LMNA-223ENST00000515459 HSPA2P54652 639 aa26.21■■□□□ 1.79
LMNA-223ENST00000515459 FMN1Q68DA7 1419 aa26.21■■□□□ 1.79
LMNA-223ENST00000515459 MLECQ14165 292 aa26.2■■□□□ 1.78
LMNA-223ENST00000515459 ATP1B4Q9UN42 357 aaPredicted RBP26.2■■□□□ 1.78
LMNA-223ENST00000515459 UBTFP17480 764 aaKnown RBP26.18■■□□□ 1.78
LMNA-223ENST00000515459 EFCAB2Q5VUJ9 269 aa26.16■■□□□ 1.78
LMNA-223ENST00000515459 CDK11AQ9UQ88 783 aaPredicted RBP26.16■■□□□ 1.78
LMNA-223ENST00000515459 ATP10AO60312 1499 aa26.16■■□□□ 1.78
LMNA-223ENST00000515459 EHMT2Q96KQ7 1210 aa26.14■■□□□ 1.78
LMNA-223ENST00000515459 ARHGAP35Q9NRY4 1499 aa26.14■■□□□ 1.78
LMNA-223ENST00000515459 C9orf84Q5VXU9 1444 aa26.14■■□□□ 1.77
LMNA-223ENST00000515459 KIF14Q15058 1648 aa26.13■■□□□ 1.77
LMNA-223ENST00000515459 ARHGEF12Q9NZN5 1544 aa26.12■■□□□ 1.77
LMNA-223ENST00000515459 ZNF518AQ6AHZ1 1483 aa26.09■■□□□ 1.77
LMNA-223ENST00000515459 TROQ12816 1431 aaPredicted RBP26.07■■□□□ 1.76
LMNA-223ENST00000515459 ARHGAP5Q13017 1502 aa26.07■■□□□ 1.76
LMNA-223ENST00000515459 PREX1Q8TCU6 1659 aa26.06■■□□□ 1.76
LMNA-223ENST00000515459 CLIP1P30622 1438 aa26.05■■□□□ 1.76
LMNA-223ENST00000515459 KDM5CP41229 1560 aa26.05■■□□□ 1.76
LMNA-223ENST00000515459 LRRIQ1Q96JM4 1722 aa26.05■■□□□ 1.76
LMNA-223ENST00000515459 AFAP1Q8N556 730 aa26.02■■□□□ 1.76
LMNA-223ENST00000515459 CERKQ8TCT0 537 aa26.01■■□□□ 1.75
LMNA-223ENST00000515459 CEBPAP49715 358 aaPredicted RBP26■■□□□ 1.75
LMNA-223ENST00000515459 CDC42BPBQ9Y5S2 1711 aa26■■□□□ 1.75
LMNA-223ENST00000515459 MYT1LQ9UL68 1186 aa25.99■■□□□ 1.75
LMNA-223ENST00000515459 DIP2CQ9Y2E4 1556 aa25.98■■□□□ 1.75
LMNA-223ENST00000515459 REREQ9P2R6 1566 aa25.96■■□□□ 1.75
LMNA-223ENST00000515459 PREX2Q70Z35 1606 aa25.94■■□□□ 1.74
LMNA-223ENST00000515459 SETD1BQ9UPS6 1966 aaKnown RBP25.93■■□□□ 1.74
LMNA-223ENST00000515459 MLH3Q9UHC1 1453 aa25.93■■□□□ 1.74
LMNA-223ENST00000515459 ABCA6Q8N139 1617 aa25.92■■□□□ 1.74
LMNA-223ENST00000515459 UHRF1BP1Q6BDS2 1440 aa25.92■■□□□ 1.74
LMNA-223ENST00000515459 CHIC1Q5VXU3 224 aa25.92■■□□□ 1.74
LMNA-223ENST00000515459 STRCQ7RTU9 1775 aa25.91■■□□□ 1.74
LMNA-223ENST00000515459 CCDC18Q5T9S5 1454 aa25.91■■□□□ 1.74
LMNA-223ENST00000515459 ABCC1P33527 1531 aa25.9■■□□□ 1.74
LMNA-223ENST00000515459 DMRT2Q9Y5R5 561 aa25.9■■□□□ 1.74
LMNA-223ENST00000515459 ITSN2Q9NZM3 1697 aa25.89■■□□□ 1.73
LMNA-223ENST00000515459 CASKIN1Q8WXD9 1431 aa25.88■■□□□ 1.73
LMNA-223ENST00000515459 C3P01024 1663 aa25.88■■□□□ 1.73
LMNA-223ENST00000515459 TRAPPC8Q9Y2L5 1435 aa25.88■■□□□ 1.73
LMNA-223ENST00000515459 AGLP35573 1532 aa25.87■■□□□ 1.73
LMNA-223ENST00000515459 ESF1Q9H501 851 aaKnown RBP25.85■■□□□ 1.73
LMNA-223ENST00000515459 CDC42BPAQ5VT25 1732 aa25.84■■□□□ 1.73
LMNA-223ENST00000515459 KIDINS220Q9ULH0 1771 aa25.83■■□□□ 1.73
LMNA-223ENST00000515459 FYCO1Q9BQS8 1478 aa25.77■■□□□ 1.72
LMNA-223ENST00000515459 PTPRTO14522 1441 aa25.76■■□□□ 1.71
LMNA-223ENST00000515459 CNTLNQ9NXG0 1405 aa25.76■■□□□ 1.71
LMNA-223ENST00000515459 SAMD9LQ8IVG5 1584 aa25.74■■□□□ 1.71
LMNA-223ENST00000515459 ZNF777Q9ULD5 760 aaPredicted RBP25.73■■□□□ 1.71
LMNA-223ENST00000515459 MROH2AA6NES4 1674 aa25.71■■□□□ 1.71
LMNA-223ENST00000515459 SYCP2Q9BX26 1530 aa25.7■■□□□ 1.7
LMNA-223ENST00000515459 GPATCH8Q9UKJ3 1502 aaKnown RBP25.69■■□□□ 1.7
LMNA-223ENST00000515459 SPAG9O60271 1321 aaKnown RBP25.67■■□□□ 1.7
LMNA-223ENST00000515459 SUPT6HQ7KZ85 1726 aaKnown RBP25.67■■□□□ 1.7
LMNA-223ENST00000515459 NCOA1Q15788 1441 aa25.66■■□□□ 1.7
LMNA-223ENST00000515459 NPATQ14207 1427 aa25.65■■□□□ 1.7
LMNA-223ENST00000515459 HNRNPMP52272 730 aaKnown RBP eCLIP25.65■■□□□ 1.7
LMNA-223ENST00000515459 ATP7AQ04656 1500 aa25.64■■□□□ 1.7
LMNA-223ENST00000515459 LTBP4Q8N2S1 1624 aa25.64■■□□□ 1.7
LMNA-223ENST00000515459 ZMYM3Q14202 1370 aa25.63■■□□□ 1.69
LMNA-223ENST00000515459 PLEKHH2Q8IVE3 1493 aa25.62■■□□□ 1.69
LMNA-223ENST00000515459 KIAA1107Q9UPP5 1409 aa25.62■■□□□ 1.69
LMNA-223ENST00000515459 DISP3Q9P2K9 1392 aa25.61■■□□□ 1.69
LMNA-223ENST00000515459 CFDP1Q9UEE9 299 aaPredicted RBP25.61■■□□□ 1.69
LMNA-223ENST00000515459 CAMSAP1Q5T5Y3 1602 aa25.61■■□□□ 1.69
LMNA-223ENST00000515459 INO80Q9ULG1 1556 aaPredicted RBP25.61■■□□□ 1.69
LMNA-223ENST00000515459 CLTCQ00610 1675 aaKnown RBP25.6■■□□□ 1.69
LMNA-223ENST00000515459 PLXNC1O60486 1568 aa25.6■■□□□ 1.69
LMNA-223ENST00000515459 IQSEC2Q5JU85 1478 aa25.59■■□□□ 1.69
LMNA-223ENST00000515459 CCNB3Q8WWL7 1395 aa25.58■■□□□ 1.69
LMNA-223ENST00000515459 A2MP01023 1474 aa25.58■■□□□ 1.69
LMNA-223ENST00000515459 MYO3AQ8NEV4 1616 aa25.54■■□□□ 1.68
LMNA-223ENST00000515459 ZNF142P52746 1687 aaPredicted RBP25.54■■□□□ 1.68
LMNA-223ENST00000515459 MTUS2Q5JR59 1369 aa25.54■■□□□ 1.68
LMNA-223ENST00000515459 ADGBQ8N7X0 1667 aa25.53■■□□□ 1.68
LMNA-223ENST00000515459 GGT6Q6P531 493 aa25.51■■□□□ 1.67
LMNA-223ENST00000515459 ILDR2Q71H61 639 aa25.51■■□□□ 1.67
LMNA-223ENST00000515459 PTPRKQ15262 1439 aa25.5■■□□□ 1.67
LMNA-223ENST00000515459 NCKAP5LQ9HCH0 1330 aa25.5■■□□□ 1.67
LMNA-223ENST00000515459 CEP170BQ9Y4F5 1589 aaPredicted RBP25.49■■□□□ 1.67
LMNA-223ENST00000515459 PLA2R1Q13018 1463 aa25.49■■□□□ 1.67
LMNA-223ENST00000515459 SPATA31D1Q6ZQQ2 1576 aa25.48■■□□□ 1.67
LMNA-223ENST00000515459 PPP6R1Q9UPN7 881 aa25.48■■□□□ 1.67
LMNA-223ENST00000515459 TIAM1Q13009 1591 aa25.47■■□□□ 1.67
LMNA-223ENST00000515459 PKD2Q13563 968 aa25.46■■□□□ 1.67
LMNA-223ENST00000515459 ZNF335Q9H4Z2 1342 aaPredicted RBP25.44■■□□□ 1.66
LMNA-223ENST00000515459 ZNF644Q9H582 1327 aaPredicted RBP25.44■■□□□ 1.66
LMNA-223ENST00000515459 EHBP1L1Q8N3D4 1523 aa25.44■■□□□ 1.66
LMNA-223ENST00000515459 TCOF1Q13428 1488 aaKnown RBP25.43■■□□□ 1.66
LMNA-223ENST00000515459 MBD5Q9P267 1494 aa25.43■■□□□ 1.66
LMNA-223ENST00000515459 SOCS7O14512 581 aa25.43■■□□□ 1.66
LMNA-223ENST00000515459 RTEL1-TNFRSF6BF6WH68 1400 aa25.41■■□□□ 1.66
LMNA-223ENST00000515459 CEP162Q5TB80 1403 aa25.37■■□□□ 1.65
LMNA-223ENST00000515459 A2ML1A8K2U0 1454 aa25.37■■□□□ 1.65
LMNA-223ENST00000515459 DHX29Q7Z478 1369 aaKnown RBP25.37■■□□□ 1.65
LMNA-223ENST00000515459 UBAP1LF5GYI3 381 aa25.36■■□□□ 1.65
LMNA-223ENST00000515459 DNMT1P26358 1616 aaKnown RBP25.36■■□□□ 1.65
LMNA-223ENST00000515459 CCDC141Q6ZP82 1450 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms