RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MYOM3Q5VTT5 1437 aa12.68□□□□□ -0.38
LIMCH1-209ENST00000509277 KIF14Q15058 1648 aa12.68□□□□□ -0.38
LIMCH1-209ENST00000509277 SUPT6HQ7KZ85 1726 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-209ENST00000509277 ADCY10Q96PN6 1610 aa12.67□□□□□ -0.38
LIMCH1-209ENST00000509277 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.67□□□□□ -0.38
LIMCH1-209ENST00000509277 EFCAB2Q5VUJ9 269 aa12.67□□□□□ -0.38
LIMCH1-209ENST00000509277 DNAJC5Q9H3Z4 198 aa12.66□□□□□ -0.38
LIMCH1-209ENST00000509277 AFAP1Q8N556 730 aa12.65□□□□□ -0.38
LIMCH1-209ENST00000509277 ZCCHC11Q5TAX3 1644 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-209ENST00000509277 ARHGAP5Q13017 1502 aa12.65□□□□□ -0.38
LIMCH1-209ENST00000509277 PLPPR3Q6T4P5 718 aa12.64□□□□□ -0.39
LIMCH1-209ENST00000509277 MAP3K1Q13233 1512 aa12.63□□□□□ -0.39
LIMCH1-209ENST00000509277 RAPGEF3O95398 923 aa12.62□□□□□ -0.39
LIMCH1-209ENST00000509277 WDR7Q9Y4E6 1490 aa12.61□□□□□ -0.39
LIMCH1-209ENST00000509277 KDM5BQ9UGL1 1544 aa12.6□□□□□ -0.39
LIMCH1-209ENST00000509277 GPATCH8Q9UKJ3 1502 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-209ENST00000509277 CD109Q6YHK3 1445 aa12.59□□□□□ -0.39
LIMCH1-209ENST00000509277 RRBP1Q9P2E9 1410 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-209ENST00000509277 BCANQ96GW7 911 aa12.58□□□□□ -0.4
LIMCH1-209ENST00000509277 UHRF1BP1LA0JNW5 1464 aa12.57□□□□□ -0.4
LIMCH1-209ENST00000509277 FOXD1Q16676 465 aa12.57□□□□□ -0.4
LIMCH1-209ENST00000509277 PTPN23Q9H3S7 1636 aa12.57□□□□□ -0.4
LIMCH1-209ENST00000509277 MLECQ14165 292 aa12.57□□□□□ -0.4
LIMCH1-209ENST00000509277 TSPOAP1O95153 1857 aa12.56□□□□□ -0.4
LIMCH1-209ENST00000509277 TTC37Q6PGP7 1564 aa12.56□□□□□ -0.4
LIMCH1-209ENST00000509277 CAMSAP2Q08AD1 1489 aa12.56□□□□□ -0.4
LIMCH1-209ENST00000509277 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIMCH1-209ENST00000509277 SPAG9O60271 1321 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-209ENST00000509277 RAB3GAP2Q9H2M9 1393 aa12.55□□□□□ -0.4
LIMCH1-209ENST00000509277 PTPRKQ15262 1439 aa12.55□□□□□ -0.4
LIMCH1-209ENST00000509277 SCAPERQ9BY12 1400 aa12.53□□□□□ -0.4
LIMCH1-209ENST00000509277 FANCAO15360 1455 aa12.53□□□□□ -0.4
LIMCH1-209ENST00000509277 GGT6Q6P531 493 aa12.52□□□□□ -0.41
LIMCH1-209ENST00000509277 ARID4BQ4LE39 1312 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-209ENST00000509277 ABCC10Q5T3U5 1492 aa12.51□□□□□ -0.41
LIMCH1-209ENST00000509277 SENP3Q9H4L4 574 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-209ENST00000509277 SETD5Q9C0A6 1442 aa12.51□□□□□ -0.41
LIMCH1-209ENST00000509277 MIA2Q96PC5 1412 aa12.51□□□□□ -0.41
LIMCH1-209ENST00000509277 PLCH2O75038 1416 aa12.5□□□□□ -0.41
LIMCH1-209ENST00000509277 DAPK1P53355 1430 aa12.5□□□□□ -0.41
LIMCH1-209ENST00000509277 SLC4A1APQ9BWU0 796 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-209ENST00000509277 SYCP2Q9BX26 1530 aa12.5□□□□□ -0.41
LIMCH1-209ENST00000509277 ABCC5O15440 1437 aa12.5□□□□□ -0.41
LIMCH1-209ENST00000509277 ADGRL1O94910 1474 aa12.49□□□□□ -0.41
LIMCH1-209ENST00000509277 KIF3BO15066 747 aa12.49□□□□□ -0.41
LIMCH1-209ENST00000509277 SIN3AQ96ST3 1273 aa12.49□□□□□ -0.41
LIMCH1-209ENST00000509277 TRAPPC8Q9Y2L5 1435 aa12.48□□□□□ -0.41
LIMCH1-209ENST00000509277 ANKRD30AQ9BXX3 1397 aa12.48□□□□□ -0.41
LIMCH1-209ENST00000509277 CDC42BPAQ5VT25 1732 aa12.48□□□□□ -0.41
LIMCH1-209ENST00000509277 C9orf84Q5VXU9 1444 aa12.47□□□□□ -0.41
LIMCH1-209ENST00000509277 KIF15Q9NS87 1388 aa12.47□□□□□ -0.41
LIMCH1-209ENST00000509277 AKNAQ7Z591 1439 aa12.47□□□□□ -0.41
LIMCH1-209ENST00000509277 ITSN2Q9NZM3 1697 aa12.46□□□□□ -0.41
LIMCH1-209ENST00000509277 MYO5CQ9NQX4 1742 aa12.45□□□□□ -0.42
LIMCH1-209ENST00000509277 ZNF326Q5BKZ1 582 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-209ENST00000509277 CDC42BPBQ9Y5S2 1711 aa12.44□□□□□ -0.42
LIMCH1-209ENST00000509277 SAMD9LQ8IVG5 1584 aa12.43□□□□□ -0.42
LIMCH1-209ENST00000509277 NUP155O75694 1391 aa12.43□□□□□ -0.42
LIMCH1-209ENST00000509277 CCDC141Q6ZP82 1450 aa12.42□□□□□ -0.42
LIMCH1-209ENST00000509277 ARHGEF12Q9NZN5 1544 aa12.42□□□□□ -0.42
LIMCH1-209ENST00000509277 RSPH4AQ5TD94 716 aa12.42□□□□□ -0.42
LIMCH1-209ENST00000509277 CHGAP10645 457 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-209ENST00000509277 NAIPQ13075 1403 aa12.42□□□□□ -0.42
LIMCH1-209ENST00000509277 PKD2Q13563 968 aa12.41□□□□□ -0.42
LIMCH1-209ENST00000509277 MPHOSPH9Q99550 1183 aa12.41□□□□□ -0.42
LIMCH1-209ENST00000509277 PREX2Q70Z35 1606 aa12.4□□□□□ -0.42
LIMCH1-209ENST00000509277 ANKRD50Q9ULJ7 1429 aa12.4□□□□□ -0.42
LIMCH1-209ENST00000509277 ESF1Q9H501 851 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-209ENST00000509277 TCOF1Q13428 1488 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-209ENST00000509277 RGL3Q3MIN7 710 aa12.39□□□□□ -0.43
LIMCH1-209ENST00000509277 NCOA1Q15788 1441 aa12.39□□□□□ -0.43
LIMCH1-209ENST00000509277 DHX57Q6P158 1386 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-209ENST00000509277 MIER1Q8N108 512 aa12.38□□□□□ -0.43
LIMCH1-209ENST00000509277 DENND4BO75064 1496 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-209ENST00000509277 MBD5Q9P267 1494 aa12.37□□□□□ -0.43
LIMCH1-209ENST00000509277 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.37□□□□□ -0.43
LIMCH1-209ENST00000509277 PLEKHH2Q8IVE3 1493 aa12.37□□□□□ -0.43
LIMCH1-209ENST00000509277 MAPKBP1O60336 1514 aa12.37□□□□□ -0.43
LIMCH1-209ENST00000509277 ANP32EQ9BTT0 268 aa12.37□□□□□ -0.43
LIMCH1-209ENST00000509277 HFM1A2PYH4 1435 aa12.37□□□□□ -0.43
LIMCH1-209ENST00000509277 KDM2AQ9Y2K7 1162 aa12.36□□□□□ -0.43
LIMCH1-209ENST00000509277 DNMT1P26358 1616 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-209ENST00000509277 ABCA9Q8IUA7 1624 aa12.36□□□□□ -0.43
LIMCH1-209ENST00000509277 ERICH6Q7L0X2 663 aa12.36□□□□□ -0.43
LIMCH1-209ENST00000509277 DIP2BQ9P265 1576 aa12.35□□□□□ -0.43
LIMCH1-209ENST00000509277 KDM6BO15054 1643 aa12.35□□□□□ -0.43
LIMCH1-209ENST00000509277 WASHC2CQ9Y4E1 1318 aa12.34□□□□□ -0.43
LIMCH1-209ENST00000509277 ABCC1P33527 1531 aa12.33□□□□□ -0.44
LIMCH1-209ENST00000509277 PRKCSHP14314 528 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-209ENST00000509277 YEATS2Q9ULM3 1422 aa12.33□□□□□ -0.44
LIMCH1-209ENST00000509277 KIAA1107Q9UPP5 1409 aa12.32□□□□□ -0.44
LIMCH1-209ENST00000509277 HIRIP3Q9BW71 556 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-209ENST00000509277 ZNF518AQ6AHZ1 1483 aa12.31□□□□□ -0.44
LIMCH1-209ENST00000509277 TEX14Q8IWB6 1497 aa12.31□□□□□ -0.44
LIMCH1-209ENST00000509277 TONSLQ96HA7 1378 aa12.3□□□□□ -0.44
LIMCH1-209ENST00000509277 ROCK1Q13464 1354 aa12.3□□□□□ -0.44
LIMCH1-209ENST00000509277 POGZQ7Z3K3 1410 aa12.29□□□□□ -0.44
LIMCH1-209ENST00000509277 NUTM2DQ5VT03 806 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-209ENST00000509277 COL17A1Q9UMD9 1497 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-209ENST00000509277 KANK1Q14678 1352 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms