RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZSWIM6Q9HCJ5 1215 aa9.92□□□□□ -0.82
NUP54-208ENST00000508604 TMEM92Q6UXU6 159 aa9.9□□□□□ -0.83
NUP54-208ENST00000508604 POTEB3A0JP26 581 aa9.89□□□□□ -0.83
NUP54-208ENST00000508604 POTEBQ6S5H4 581 aa9.89□□□□□ -0.83
NUP54-208ENST00000508604 FBXO22Q8NEZ5 403 aa9.88□□□□□ -0.83
NUP54-208ENST00000508604 PKD2Q13563 968 aa9.86□□□□□ -0.83
NUP54-208ENST00000508604 MFRPQ9BY79 579 aa9.86□□□□□ -0.83
NUP54-208ENST00000508604 KRTAP3-3Q9BYR6 98 aa9.86□□□□□ -0.83
NUP54-208ENST00000508604 KRTAP3-2Q9BYR7 98 aa9.86□□□□□ -0.83
NUP54-208ENST00000508604 RGL2O15211 777 aa9.85□□□□□ -0.83
NUP54-208ENST00000508604 VARS2Q5ST30 1063 aaKnown RBP9.83□□□□□ -0.84
NUP54-208ENST00000508604 GPR153Q6NV75 609 aa9.81□□□□□ -0.84
NUP54-208ENST00000508604 ARSIQ5FYB1 569 aa9.78□□□□□ -0.84
NUP54-208ENST00000508604 TMC2Q8TDI7 906 aa9.78□□□□□ -0.84
NUP54-208ENST00000508604 ZNF687Q8N1G0 1237 aa9.77□□□□□ -0.84
NUP54-208ENST00000508604 C2orf72A6NCS6 295 aa9.76□□□□□ -0.85
NUP54-208ENST00000508604 KIF3CO14782 793 aa9.73□□□□□ -0.85
NUP54-208ENST00000508604 ZNF316A6NFI3 1004 aaPredicted RBP9.72□□□□□ -0.85
NUP54-208ENST00000508604 KHSRPQ92945 711 aaKnown RBP eCLIP9.7□□□□□ -0.861e-6■■■□□ 15.4
NUP54-208ENST00000508604 SLC34A2O95436 690 aa9.68□□□□□ -0.86
NUP54-208ENST00000508604 PTGER2P43116 358 aa9.68□□□□□ -0.86
NUP54-208ENST00000508604 HS6ST3Q8IZP7 471 aa9.68□□□□□ -0.86
NUP54-208ENST00000508604 RNF166Q96A37 237 aaPredicted RBP9.68□□□□□ -0.86
NUP54-208ENST00000508604 NUDT7P0C024 238 aa9.67□□□□□ -0.86
NUP54-208ENST00000508604 MYT1LQ9UL68 1186 aa9.67□□□□□ -0.86
NUP54-208ENST00000508604 PPP1R37O75864 691 aa9.67□□□□□ -0.86
NUP54-208ENST00000508604 PCDHGA4Q9Y5G9 962 aa9.67□□□□□ -0.86
NUP54-208ENST00000508604 CHGAP10645 457 aaKnown RBP9.66□□□□□ -0.86
NUP54-208ENST00000508604 ANKRD13DQ6ZTN6 518 aa9.66□□□□□ -0.86
NUP54-208ENST00000508604 RYDENQ9NUL5 291 aaKnown RBP9.64□□□□□ -0.87
NUP54-208ENST00000508604 PBX2P40425 430 aa9.62□□□□□ -0.87
NUP54-208ENST00000508604 PSDA5PKW4 1024 aaPredicted RBP9.61□□□□□ -0.87
NUP54-208ENST00000508604 LHX6Q9UPM6 363 aa9.61□□□□□ -0.87
NUP54-208ENST00000508604 LSM11P83369 360 aaKnown RBP eCLIP9.6□□□□□ -0.87
NUP54-208ENST00000508604 TBC1D12O60347 775 aa9.59□□□□□ -0.87
NUP54-208ENST00000508604 FOXK1P85037 733 aa9.58□□□□□ -0.88
NUP54-208ENST00000508604 GPHNQ9NQX3 736 aaPredicted RBP9.58□□□□□ -0.88
NUP54-208ENST00000508604 PLPP6Q8IY26 295 aa9.58□□□□□ -0.88
NUP54-208ENST00000508604 PTCD2Q8WV60 388 aaKnown RBP9.56□□□□□ -0.88
NUP54-208ENST00000508604 DNAJC5Q9H3Z4 198 aa9.54□□□□□ -0.88
NUP54-208ENST00000508604 AXIN2Q9Y2T1 843 aa9.53□□□□□ -0.88
NUP54-208ENST00000508604 DSG2Q14126 1118 aa9.52□□□□□ -0.89
NUP54-208ENST00000508604 ARHGAP33O14559 1287 aa9.51□□□□□ -0.89
NUP54-208ENST00000508604 PPP4R3BQ5MIZ7 849 aa9.51□□□□□ -0.89
NUP54-208ENST00000508604 KCNH8Q96L42 1107 aa9.5□□□□□ -0.89
NUP54-208ENST00000508604 NKX1-1Q15270 411 aaPredicted RBP9.48□□□□□ -0.89
NUP54-208ENST00000508604 POTEEQ6S8J3 1075 aa9.48□□□□□ -0.89
NUP54-208ENST00000508604 DCAF8L2P0C7V8 631 aa9.46□□□□□ -0.89
NUP54-208ENST00000508604 ADGRD1Q6QNK2 874 aa9.46□□□□□ -0.89
NUP54-208ENST00000508604 STAC3Q96MF2 364 aa9.46□□□□□ -0.89
NUP54-208ENST00000508604 KDM4FA0A1W2PPD8 638 aa9.45□□□□□ -0.9
NUP54-208ENST00000508604 PDE4AP27815 886 aa9.45□□□□□ -0.9
NUP54-208ENST00000508604 TK2O00142 265 aa9.44□□□□□ -0.9
NUP54-208ENST00000508604 UPF1Q92900 1129 aaKnown RBP eCLIP9.44□□□□□ -0.91e-7■□□□□ 10.5
NUP54-208ENST00000508604 PPP1R15BQ5SWA1 713 aa9.43□□□□□ -0.9
NUP54-208ENST00000508604 CRISPLD2Q9H0B8 497 aa9.42□□□□□ -0.9
NUP54-208ENST00000508604 OXER1Q8TDS5 423 aa9.42□□□□□ -0.9
NUP54-208ENST00000508604 HCSTQ9UBK5 93 aa9.42□□□□□ -0.9
NUP54-208ENST00000508604 PSEN2P49810 448 aa9.41□□□□□ -0.9
NUP54-208ENST00000508604 DMRTA1Q5VZB9 504 aa9.39□□□□□ -0.91
NUP54-208ENST00000508604 ZNF454Q8N9F8 522 aa9.39□□□□□ -0.91
NUP54-208ENST00000508604 KCNK17Q96T54 332 aa9.39□□□□□ -0.91
NUP54-208ENST00000508604 GTPBP6O43824 516 aaPredicted RBP9.37□□□□□ -0.91
NUP54-208ENST00000508604 DDX27Q96GQ7 796 aaKnown RBP9.36□□□□□ -0.91
NUP54-208ENST00000508604 LARP6Q9BRS8 491 aaKnown RBP9.36□□□□□ -0.91
NUP54-208ENST00000508604 NCKAP5LQ9HCH0 1330 aa9.35□□□□□ -0.91
NUP54-208ENST00000508604 HRO43593 1189 aa9.35□□□□□ -0.91
NUP54-208ENST00000508604 PTPREP23469 700 aa9.33□□□□□ -0.92
NUP54-208ENST00000508604 MAP3K9P80192 1104 aa9.33□□□□□ -0.92
NUP54-208ENST00000508604 PLA2G2EQ9NZK7 142 aa9.33□□□□□ -0.92
NUP54-208ENST00000508604 BCL2L12Q9HB09 334 aa9.32□□□□□ -0.92
NUP54-208ENST00000508604 EVI5O60447 810 aa9.32□□□□□ -0.92
NUP54-208ENST00000508604 KCTD12Q96CX2 325 aaKnown RBP9.32□□□□□ -0.92
NUP54-208ENST00000508604 FOSBP53539 338 aa9.3□□□□□ -0.92
NUP54-208ENST00000508604 VPS9D1Q9Y2B5 631 aa9.3□□□□□ -0.92
NUP54-208ENST00000508604 JPH4Q96JJ6 628 aa9.29□□□□□ -0.92
NUP54-208ENST00000508604 ANO8Q9HCE9 1232 aaPredicted RBP9.29□□□□□ -0.92
NUP54-208ENST00000508604 GOLGA8CPA6NN73 597 aa9.29□□□□□ -0.92
NUP54-208ENST00000508604 ZDHHC16Q969W1 377 aa9.29□□□□□ -0.92
NUP54-208ENST00000508604 SLC4A5Q9BY07 1137 aa9.29□□□□□ -0.92
NUP54-208ENST00000508604 MFSD10Q14728 455 aa9.28□□□□□ -0.92
NUP54-208ENST00000508604 PTPN5P54829 565 aa9.23□□□□□ -0.93
NUP54-208ENST00000508604 MRPL50Q8N5N7 158 aaKnown RBP9.23□□□□□ -0.93
NUP54-208ENST00000508604 NBPF3Q9H094 633 aa9.23□□□□□ -0.93
NUP54-208ENST00000508604 ZBED2Q9BTP6 218 aa9.23□□□□□ -0.93
NUP54-208ENST00000508604 ADAM33Q9BZ11 813 aa9.22□□□□□ -0.93
NUP54-208ENST00000508604 WNT2BQ93097 391 aa9.2□□□□□ -0.94
NUP54-208ENST00000508604 FBXW7Q969H0 707 aa9.2□□□□□ -0.94
NUP54-208ENST00000508604 EMILIN3Q9NT22 766 aa9.2□□□□□ -0.94
NUP54-208ENST00000508604 BHMG1C9JSJ3 638 aaPredicted RBP9.19□□□□□ -0.94
NUP54-208ENST00000508604 TYW1BQ6NUM6 668 aa9.19□□□□□ -0.94
NUP54-208ENST00000508604 PPP1R3GB7ZBB8 358 aa9.18□□□□□ -0.94
NUP54-208ENST00000508604 PHF14O94880 888 aa9.18□□□□□ -0.94
NUP54-208ENST00000508604 CADPS2Q86UW7 1296 aa9.18□□□□□ -0.94
NUP54-208ENST00000508604 THSD4Q6ZMP0 1018 aa9.17□□□□□ -0.94
NUP54-208ENST00000508604 PCDHGA10Q9Y5H3 936 aa9.17□□□□□ -0.94
NUP54-208ENST00000508604 BBXQ8WY36 941 aaPredicted RBP9.16□□□□□ -0.94
NUP54-208ENST00000508604 EPAS1Q99814 870 aa9.14□□□□□ -0.95
NUP54-208ENST00000508604 RABGEF1Q9UJ41 708 aa9.14□□□□□ -0.95
NUP54-208ENST00000508604 CAMK2BQ13554 666 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms