RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	FMN1	Q68DA7	1419 aa		29.49	■■■□□ 2.31
NUP50-218	ENST00000493456	PLPPR3	Q6T4P5	718 aa		29.49	■■■□□ 2.31
NUP50-218	ENST00000493456	C9orf84	Q5VXU9	1444 aa		29.47	■■■□□ 2.31
NUP50-218	ENST00000493456	MYO5C	Q9NQX4	1742 aa		29.47	■■■□□ 2.31
NUP50-218	ENST00000493456	ATP10A	O60312	1499 aa		29.47	■■■□□ 2.31
NUP50-218	ENST00000493456	ARHGEF12	Q9NZN5	1544 aa		29.46	■■■□□ 2.31
NUP50-218	ENST00000493456	MLEC	Q14165	292 aa		29.46	■■■□□ 2.31
NUP50-218	ENST00000493456	EFCAB2	Q5VUJ9	269 aa		29.44	■■■□□ 2.3
NUP50-218	ENST00000493456	CDK11A	Q9UQ88	783 aa	Predicted RBP	29.43	■■■□□ 2.3
NUP50-218	ENST00000493456	KIF14	Q15058	1648 aa		29.41	■■■□□ 2.3
NUP50-218	ENST00000493456	ZNF518A	Q6AHZ1	1483 aa		29.4	■■■□□ 2.3
NUP50-218	ENST00000493456	PREX1	Q8TCU6	1659 aa		29.38	■■■□□ 2.29
NUP50-218	ENST00000493456	ATP1B4	Q9UN42	357 aa	Predicted RBP	29.38	■■■□□ 2.29
NUP50-218	ENST00000493456	ARHGAP35	Q9NRY4	1499 aa		29.37	■■■□□ 2.29
NUP50-218	ENST00000493456	CERK	Q8TCT0	537 aa		29.36	■■■□□ 2.29
NUP50-218	ENST00000493456	TRO	Q12816	1431 aa	Predicted RBP	29.36	■■■□□ 2.29
NUP50-218	ENST00000493456	KDM5C	P41229	1560 aa		29.35	■■■□□ 2.29
NUP50-218	ENST00000493456	UBTF	P17480	764 aa	Known RBP	29.35	■■■□□ 2.29
NUP50-218	ENST00000493456	ARHGAP5	Q13017	1502 aa		29.34	■■■□□ 2.29
NUP50-218	ENST00000493456	CLIP1	P30622	1438 aa		29.33	■■■□□ 2.29
NUP50-218	ENST00000493456	RERE	Q9P2R6	1566 aa		29.28	■■■□□ 2.28
NUP50-218	ENST00000493456	DIP2C	Q9Y2E4	1556 aa		29.26	■■■□□ 2.27
NUP50-218	ENST00000493456	AFAP1	Q8N556	730 aa		29.25	■■■□□ 2.27
NUP50-218	ENST00000493456	UHRF1BP1	Q6BDS2	1440 aa		29.25	■■■□□ 2.27
NUP50-218	ENST00000493456	CEBPA	P49715	358 aa	Predicted RBP	29.24	■■■□□ 2.27
NUP50-218	ENST00000493456	EHMT2	Q96KQ7	1210 aa		29.23	■■■□□ 2.27
NUP50-218	ENST00000493456	DMRT2	Q9Y5R5	561 aa		29.23	■■■□□ 2.27
NUP50-218	ENST00000493456	MLH3	Q9UHC1	1453 aa		29.22	■■■□□ 2.27
NUP50-218	ENST00000493456	LRRIQ1	Q96JM4	1722 aa		29.21	■■■□□ 2.27
NUP50-218	ENST00000493456	MYT1L	Q9UL68	1186 aa		29.2	■■■□□ 2.26
NUP50-218	ENST00000493456	CDC42BPB	Q9Y5S2	1711 aa		29.2	■■■□□ 2.26
NUP50-218	ENST00000493456	ABCA6	Q8N139	1617 aa		29.2	■■■□□ 2.26
NUP50-218	ENST00000493456	STRC	Q7RTU9	1775 aa		29.18	■■■□□ 2.26
NUP50-218	ENST00000493456	PREX2	Q70Z35	1606 aa		29.18	■■■□□ 2.26
NUP50-218	ENST00000493456	SETD1B	Q9UPS6	1966 aa	Known RBP	29.17	■■■□□ 2.26
NUP50-218	ENST00000493456	ABCC1	P33527	1531 aa		29.17	■■■□□ 2.26
NUP50-218	ENST00000493456	AGL	P35573	1532 aa		29.17	■■■□□ 2.26
NUP50-218	ENST00000493456	CCDC18	Q5T9S5	1454 aa		29.16	■■■□□ 2.26
NUP50-218	ENST00000493456	C3	P01024	1663 aa		29.13	■■■□□ 2.25
NUP50-218	ENST00000493456	ITSN2	Q9NZM3	1697 aa		29.12	■■■□□ 2.25
NUP50-218	ENST00000493456	CASKIN1	Q8WXD9	1431 aa		29.11	■■■□□ 2.25
NUP50-218	ENST00000493456	TRAPPC8	Q9Y2L5	1435 aa		29.11	■■■□□ 2.25
NUP50-218	ENST00000493456	ESF1	Q9H501	851 aa	Known RBP	29.1	■■■□□ 2.25
NUP50-218	ENST00000493456	PTPRT	O14522	1441 aa		29.09	■■■□□ 2.25
NUP50-218	ENST00000493456	CNTLN	Q9NXG0	1405 aa		29.06	■■■□□ 2.24
NUP50-218	ENST00000493456	KIDINS220	Q9ULH0	1771 aa		29.05	■■■□□ 2.24
NUP50-218	ENST00000493456	CDC42BPA	Q5VT25	1732 aa		29.03	■■■□□ 2.24
NUP50-218	ENST00000493456	CHIC1	Q5VXU3	224 aa		29	■■■□□ 2.23
NUP50-218	ENST00000493456	FYCO1	Q9BQS8	1478 aa		28.98	■■■□□ 2.23
NUP50-218	ENST00000493456	SAMD9L	Q8IVG5	1584 aa		28.97	■■■□□ 2.23
NUP50-218	ENST00000493456	MROH2A	A6NES4	1674 aa		28.96	■■■□□ 2.23
NUP50-218	ENST00000493456	NCOA1	Q15788	1441 aa		28.96	■■■□□ 2.23
NUP50-218	ENST00000493456	NPAT	Q14207	1427 aa		28.95	■■■□□ 2.23
NUP50-218	ENST00000493456	IQSEC2	Q5JU85	1478 aa		28.94	■■■□□ 2.22
NUP50-218	ENST00000493456	DISP3	Q9P2K9	1392 aa		28.94	■■■□□ 2.22
NUP50-218	ENST00000493456	LTBP4	Q8N2S1	1624 aa		28.93	■■■□□ 2.22
NUP50-218	ENST00000493456	SYCP2	Q9BX26	1530 aa		28.92	■■■□□ 2.22
NUP50-218	ENST00000493456	SPAG9	O60271	1321 aa	Known RBP	28.89	■■■□□ 2.21
NUP50-218	ENST00000493456	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.89	■■■□□ 2.21
NUP50-218	ENST00000493456	ZNF777	Q9ULD5	760 aa	Predicted RBP	28.88	■■■□□ 2.21
NUP50-218	ENST00000493456	CAMSAP1	Q5T5Y3	1602 aa		28.87	■■■□□ 2.21
NUP50-218	ENST00000493456	ZMYM3	Q14202	1370 aa		28.86	■■■□□ 2.21
NUP50-218	ENST00000493456	KIAA1107	Q9UPP5	1409 aa		28.86	■■■□□ 2.21
NUP50-218	ENST00000493456	PLEKHH2	Q8IVE3	1493 aa		28.85	■■■□□ 2.21
NUP50-218	ENST00000493456	ATP7A	Q04656	1500 aa		28.85	■■■□□ 2.21
NUP50-218	ENST00000493456	PLXNC1	O60486	1568 aa		28.84	■■■□□ 2.21
NUP50-218	ENST00000493456	INO80	Q9ULG1	1556 aa	Predicted RBP	28.84	■■■□□ 2.21
NUP50-218	ENST00000493456	SUPT6H	Q7KZ85	1726 aa	Known RBP	28.83	■■■□□ 2.21
NUP50-218	ENST00000493456	SPATA31D1	Q6ZQQ2	1576 aa		28.83	■■■□□ 2.21
NUP50-218	ENST00000493456	ILDR2	Q71H61	639 aa		28.81	■■■□□ 2.2
NUP50-218	ENST00000493456	HNRNPM	P52272	730 aa	Known RBP eCLIP	28.8	■■■□□ 2.2
NUP50-218	ENST00000493456	ZNF142	P52746	1687 aa	Predicted RBP	28.8	■■■□□ 2.2
NUP50-218	ENST00000493456	A2M	P01023	1474 aa		28.79	■■■□□ 2.2
NUP50-218	ENST00000493456	CLTC	Q00610	1675 aa	Known RBP	28.79	■■■□□ 2.2
NUP50-218	ENST00000493456	SOCS7	O14512	581 aa		28.78	■■■□□ 2.2
NUP50-218	ENST00000493456	CFDP1	Q9UEE9	299 aa	Predicted RBP	28.78	■■■□□ 2.2
NUP50-218	ENST00000493456	MYO3A	Q8NEV4	1616 aa		28.78	■■■□□ 2.2
NUP50-218	ENST00000493456	PLA2R1	Q13018	1463 aa		28.77	■■■□□ 2.2
NUP50-218	ENST00000493456	CCNB3	Q8WWL7	1395 aa		28.76	■■■□□ 2.2
NUP50-218	ENST00000493456	PKD2	Q13563	968 aa		28.73	■■■□□ 2.19
NUP50-218	ENST00000493456	PTPRK	Q15262	1439 aa		28.73	■■■□□ 2.19
NUP50-218	ENST00000493456	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	28.73	■■■□□ 2.19
NUP50-218	ENST00000493456	ADGB	Q8N7X0	1667 aa		28.71	■■■□□ 2.19
NUP50-218	ENST00000493456	PPP6R1	Q9UPN7	881 aa		28.71	■■■□□ 2.19
NUP50-218	ENST00000493456	TCOF1	Q13428	1488 aa	Known RBP	28.71	■■■□□ 2.19
NUP50-218	ENST00000493456	NCKAP5L	Q9HCH0	1330 aa		28.7	■■■□□ 2.19
NUP50-218	ENST00000493456	MTUS2	Q5JR59	1369 aa		28.7	■■■□□ 2.18
NUP50-218	ENST00000493456	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.68	■■■□□ 2.18
NUP50-218	ENST00000493456	GGT6	Q6P531	493 aa		28.67	■■■□□ 2.18
NUP50-218	ENST00000493456	TIAM1	Q13009	1591 aa		28.63	■■■□□ 2.17
NUP50-218	ENST00000493456	EHBP1L1	Q8N3D4	1523 aa		28.62	■■■□□ 2.17
NUP50-218	ENST00000493456	RTEL1-TNFRSF6B	F6WH68	1400 aa		28.61	■■■□□ 2.17
NUP50-218	ENST00000493456	MBD5	Q9P267	1494 aa		28.61	■■■□□ 2.17
NUP50-218	ENST00000493456	A2ML1	A8K2U0	1454 aa		28.6	■■■□□ 2.17
NUP50-218	ENST00000493456	UBAP1L	F5GYI3	381 aa		28.6	■■■□□ 2.17
NUP50-218	ENST00000493456	DNMT1	P26358	1616 aa	Known RBP	28.56	■■■□□ 2.16
NUP50-218	ENST00000493456	ZNF644	Q9H582	1327 aa	Predicted RBP	28.56	■■■□□ 2.16
NUP50-218	ENST00000493456	FAM135A	Q9P2D6	1515 aa		28.55	■■■□□ 2.16
NUP50-218	ENST00000493456	CEP162	Q5TB80	1403 aa		28.55	■■■□□ 2.16
NUP50-218	ENST00000493456	DHX29	Q7Z478	1369 aa	Known RBP	28.55	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms