RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 C2orf72A6NCS6 295 aa9.59□□□□□ -0.87
CPSF3-205ENST00000489629 HOXB1P14653 301 aaPredicted RBP9.58□□□□□ -0.88
CPSF3-205ENST00000489629 AMER1Q5JTC6 1135 aaPredicted RBP9.58□□□□□ -0.88
CPSF3-205ENST00000489629 CDAN1Q8IWY9 1227 aa9.57□□□□□ -0.88
CPSF3-205ENST00000489629 ZNF710Q8N1W2 664 aa9.57□□□□□ -0.88
CPSF3-205ENST00000489629 DCAF8L2P0C7V8 631 aa9.56□□□□□ -0.88
CPSF3-205ENST00000489629 EMP3P54852 163 aa9.56□□□□□ -0.88
CPSF3-205ENST00000489629 POTEB3A0JP26 581 aa9.55□□□□□ -0.88
CPSF3-205ENST00000489629 GTPBP6O43824 516 aaPredicted RBP9.55□□□□□ -0.88
CPSF3-205ENST00000489629 POTEBQ6S5H4 581 aa9.55□□□□□ -0.88
CPSF3-205ENST00000489629 ZSWIM6Q9HCJ5 1215 aa9.55□□□□□ -0.88
CPSF3-205ENST00000489629 RTN4Q9NQC3 1192 aaKnown RBP9.55□□□□□ -0.88
CPSF3-205ENST00000489629 RYDENQ9NUL5 291 aaKnown RBP9.55□□□□□ -0.88
CPSF3-205ENST00000489629 GPR153Q6NV75 609 aa9.54□□□□□ -0.88
CPSF3-205ENST00000489629 RIMBP2O15034 1052 aa9.53□□□□□ -0.88
CPSF3-205ENST00000489629 TMC2Q8TDI7 906 aa9.52□□□□□ -0.89
CPSF3-205ENST00000489629 FAM205CA6NFA0 338 aa9.51□□□□□ -0.89
CPSF3-205ENST00000489629 HS3ST6Q96QI5 342 aa9.51□□□□□ -0.89
CPSF3-205ENST00000489629 SLC34A2O95436 690 aa9.49□□□□□ -0.89
CPSF3-205ENST00000489629 GPHNQ9NQX3 736 aaPredicted RBP9.49□□□□□ -0.89
CPSF3-205ENST00000489629 ARSIQ5FYB1 569 aa9.48□□□□□ -0.89
CPSF3-205ENST00000489629 PLSCR2Q9NRY7 297 aa9.48□□□□□ -0.89
CPSF3-205ENST00000489629 FOXK1P85037 733 aa9.47□□□□□ -0.89
CPSF3-205ENST00000489629 KHSRPQ92945 711 aaKnown RBP eCLIP9.46□□□□□ -0.99e-6■■■□□ 18.5
CPSF3-205ENST00000489629 CRISPLD2Q9H0B8 497 aa9.45□□□□□ -0.9
CPSF3-205ENST00000489629 DSG2Q14126 1118 aa9.44□□□□□ -0.9
CPSF3-205ENST00000489629 ERBB3P21860 1342 aa9.44□□□□□ -0.9
CPSF3-205ENST00000489629 PLPP6Q8IY26 295 aa9.43□□□□□ -0.9
CPSF3-205ENST00000489629 BBXQ8WY36 941 aaPredicted RBP9.43□□□□□ -0.9
CPSF3-205ENST00000489629 KRTAP3-3Q9BYR6 98 aa9.43□□□□□ -0.9
CPSF3-205ENST00000489629 KRTAP3-2Q9BYR7 98 aa9.43□□□□□ -0.9
CPSF3-205ENST00000489629 PCDHGA4Q9Y5G9 962 aa9.43□□□□□ -0.9
CPSF3-205ENST00000489629 NCKAP5LQ9HCH0 1330 aa9.42□□□□□ -0.9
CPSF3-205ENST00000489629 VARS2Q5ST30 1063 aaKnown RBP9.41□□□□□ -0.9
CPSF3-205ENST00000489629 PTCD2Q8WV60 388 aaKnown RBP9.4□□□□□ -0.9
CPSF3-205ENST00000489629 ZNF316A6NFI3 1004 aaPredicted RBP9.39□□□□□ -0.91
CPSF3-205ENST00000489629 NUDT7P0C024 238 aa9.39□□□□□ -0.91
CPSF3-205ENST00000489629 KDM4FA0A1W2PPD8 638 aa9.38□□□□□ -0.91
CPSF3-205ENST00000489629 PDE4AP27815 886 aa9.38□□□□□ -0.91
CPSF3-205ENST00000489629 CADPS2Q86UW7 1296 aa9.36□□□□□ -0.91
CPSF3-205ENST00000489629 ZNF687Q8N1G0 1237 aa9.36□□□□□ -0.91
CPSF3-205ENST00000489629 PPP1R15BQ5SWA1 713 aa9.35□□□□□ -0.91
CPSF3-205ENST00000489629 SPNS2Q8IVW8 549 aa9.35□□□□□ -0.91
CPSF3-205ENST00000489629 MFSD10Q14728 455 aa9.34□□□□□ -0.91
CPSF3-205ENST00000489629 LHX6Q9UPM6 363 aa9.34□□□□□ -0.91
CPSF3-205ENST00000489629 OXER1Q8TDS5 423 aa9.32□□□□□ -0.92
CPSF3-205ENST00000489629 LARP6Q9BRS8 491 aaKnown RBP9.32□□□□□ -0.92
CPSF3-205ENST00000489629 SPRYD3Q8NCJ5 442 aa9.3□□□□□ -0.92
CPSF3-205ENST00000489629 DDX27Q96GQ7 796 aaKnown RBP9.3□□□□□ -0.92
CPSF3-205ENST00000489629 TBC1D12O60347 775 aa9.29□□□□□ -0.92
CPSF3-205ENST00000489629 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.29□□□□□ -0.92
CPSF3-205ENST00000489629 MMRN1Q13201 1228 aa9.28□□□□□ -0.92
CPSF3-205ENST00000489629 POTEEQ6S8J3 1075 aa9.27□□□□□ -0.93
CPSF3-205ENST00000489629 UPF1Q92900 1129 aaKnown RBP eCLIP9.27□□□□□ -0.93
CPSF3-205ENST00000489629 PSDA5PKW4 1024 aaPredicted RBP9.24□□□□□ -0.93
CPSF3-205ENST00000489629 PAXIP1Q6ZW49 1069 aaPredicted RBP9.24□□□□□ -0.93
CPSF3-205ENST00000489629 EMILIN3Q9NT22 766 aa9.24□□□□□ -0.93
CPSF3-205ENST00000489629 PBX2P40425 430 aa9.22□□□□□ -0.93
CPSF3-205ENST00000489629 CFAP44Q96MT7 982 aa9.22□□□□□ -0.93
CPSF3-205ENST00000489629 ANO8Q9HCE9 1232 aaPredicted RBP9.22□□□□□ -0.93
CPSF3-205ENST00000489629 CAMK2BQ13554 666 aa9.21□□□□□ -0.94
CPSF3-205ENST00000489629 AXIN2Q9Y2T1 843 aa9.2□□□□□ -0.94
CPSF3-205ENST00000489629 LSM11P83369 360 aaKnown RBP eCLIP9.19□□□□□ -0.94
CPSF3-205ENST00000489629 EVI5O60447 810 aa9.18□□□□□ -0.94
CPSF3-205ENST00000489629 ARHGAP33O14559 1287 aa9.17□□□□□ -0.94
CPSF3-205ENST00000489629 MAP3K9P80192 1104 aa9.17□□□□□ -0.94
CPSF3-205ENST00000489629 PPP4R3BQ5MIZ7 849 aa9.17□□□□□ -0.94
CPSF3-205ENST00000489629 FOSBP53539 338 aa9.16□□□□□ -0.94
CPSF3-205ENST00000489629 ANKRD13DQ6ZTN6 518 aa9.16□□□□□ -0.94
CPSF3-205ENST00000489629 ZNF454Q8N9F8 522 aa9.14□□□□□ -0.95
CPSF3-205ENST00000489629 PSEN2P49810 448 aa9.13□□□□□ -0.95
CPSF3-205ENST00000489629 DMRTA1Q5VZB9 504 aa9.13□□□□□ -0.95
CPSF3-205ENST00000489629 JPH4Q96JJ6 628 aa9.13□□□□□ -0.95
CPSF3-205ENST00000489629 PTGER2P43116 358 aa9.12□□□□□ -0.95
CPSF3-205ENST00000489629 BCL2L12Q9HB09 334 aa9.11□□□□□ -0.95
CPSF3-205ENST00000489629 MYT1LQ9UL68 1186 aa9.11□□□□□ -0.95
CPSF3-205ENST00000489629 DPYSL4O14531 572 aa9.1□□□□□ -0.95
CPSF3-205ENST00000489629 TK2O00142 265 aa9.09□□□□□ -0.95
CPSF3-205ENST00000489629 ADGRD1Q6QNK2 874 aa9.09□□□□□ -0.95
CPSF3-205ENST00000489629 RNF166Q96A37 237 aaPredicted RBP9.09□□□□□ -0.95
CPSF3-205ENST00000489629 PCDHGA10Q9Y5H3 936 aa9.08□□□□□ -0.96
CPSF3-205ENST00000489629 HRO43593 1189 aa9.07□□□□□ -0.96
CPSF3-205ENST00000489629 ZDHHC16Q969W1 377 aa9.07□□□□□ -0.96
CPSF3-205ENST00000489629 KCNK17Q96T54 332 aa9.07□□□□□ -0.96
CPSF3-205ENST00000489629 ADAM33Q9BZ11 813 aa9.07□□□□□ -0.96
CPSF3-205ENST00000489629 TSHZ2Q9NRE2 1034 aa9.07□□□□□ -0.96
CPSF3-205ENST00000489629 E2F4Q16254 413 aa9.06□□□□□ -0.96
CPSF3-205ENST00000489629 PHF14O94880 888 aa9.05□□□□□ -0.96
CPSF3-205ENST00000489629 ARIH1Q9Y4X5 557 aaPredicted RBP9.05□□□□□ -0.96
CPSF3-205ENST00000489629 PTPREP23469 700 aa9.04□□□□□ -0.96
CPSF3-205ENST00000489629 PDIA6Q15084 440 aa9.04□□□□□ -0.96
CPSF3-205ENST00000489629 SLC4A5Q9BY07 1137 aa9.04□□□□□ -0.96
CPSF3-205ENST00000489629 KCNH8Q96L42 1107 aa9.03□□□□□ -0.96
CPSF3-205ENST00000489629 WDR70Q9NW82 654 aa9.03□□□□□ -0.96
CPSF3-205ENST00000489629 TYW1BQ6NUM6 668 aa9.02□□□□□ -0.97
CPSF3-205ENST00000489629 ZBED2Q9BTP6 218 aa9.02□□□□□ -0.97
CPSF3-205ENST00000489629 VPS9D1Q9Y2B5 631 aa9.02□□□□□ -0.97
CPSF3-205ENST00000489629 FBXW7Q969H0 707 aa9.01□□□□□ -0.97
CPSF3-205ENST00000489629 SPDYE16A6NNV3 312 aaPredicted RBP9□□□□□ -0.97
CPSF3-205ENST00000489629 EPAS1Q99814 870 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms