RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 MLECQ14165 292 aa17.7■□□□□ 0.42
HMGN1-215ENST00000485550 ZFYVE16Q7Z3T8 1539 aa17.7■□□□□ 0.42
HMGN1-215ENST00000485550 FHOD3Q2V2M9 1422 aa17.7■□□□□ 0.42
HMGN1-215ENST00000485550 YEATS2Q9ULM3 1422 aa17.7■□□□□ 0.42
HMGN1-215ENST00000485550 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.69■□□□□ 0.42
HMGN1-215ENST00000485550 TTC37Q6PGP7 1564 aa17.69■□□□□ 0.42
HMGN1-215ENST00000485550 EFCAB5A4FU69 1503 aa17.68■□□□□ 0.42
HMGN1-215ENST00000485550 ZMYM4Q5VZL5 1548 aa17.68■□□□□ 0.42
HMGN1-215ENST00000485550 PLEKHD1A6NEE1 506 aa17.67■□□□□ 0.42
HMGN1-215ENST00000485550 HECW1Q76N89 1606 aa17.66■□□□□ 0.42
HMGN1-215ENST00000485550 PREX1Q8TCU6 1659 aa17.65■□□□□ 0.42
HMGN1-215ENST00000485550 ILDR2Q71H61 639 aa17.65■□□□□ 0.42
HMGN1-215ENST00000485550 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
HMGN1-215ENST00000485550 DISP3Q9P2K9 1392 aa17.64■□□□□ 0.41
HMGN1-215ENST00000485550 STRCQ7RTU9 1775 aa17.63■□□□□ 0.41
HMGN1-215ENST00000485550 EEA1Q15075 1411 aa17.62■□□□□ 0.41
HMGN1-215ENST00000485550 SETD1BQ9UPS6 1966 aaKnown RBP17.6■□□□□ 0.41
HMGN1-215ENST00000485550 MAGI2Q86UL8 1455 aa17.6■□□□□ 0.41
HMGN1-215ENST00000485550 ARHGEF12Q9NZN5 1544 aa17.58■□□□□ 0.41
HMGN1-215ENST00000485550 CEBPAP49715 358 aaPredicted RBP17.58■□□□□ 0.4
HMGN1-215ENST00000485550 SCAPERQ9BY12 1400 aa17.57■□□□□ 0.4
HMGN1-215ENST00000485550 CDK13Q14004 1512 aaKnown RBP17.57■□□□□ 0.4
HMGN1-215ENST00000485550 MYO5CQ9NQX4 1742 aa17.56■□□□□ 0.4
HMGN1-215ENST00000485550 SOCS7O14512 581 aa17.55■□□□□ 0.4
HMGN1-215ENST00000485550 ATP10AO60312 1499 aa17.55■□□□□ 0.4
HMGN1-215ENST00000485550 C9orf84Q5VXU9 1444 aa17.54■□□□□ 0.4
HMGN1-215ENST00000485550 SPATA31D1Q6ZQQ2 1576 aa17.53■□□□□ 0.4
HMGN1-215ENST00000485550 UBTFP17480 764 aaKnown RBP17.52■□□□□ 0.4
HMGN1-215ENST00000485550 PLCH2O75038 1416 aa17.52■□□□□ 0.4
HMGN1-215ENST00000485550 UHRF1BP1Q6BDS2 1440 aa17.49■□□□□ 0.39
HMGN1-215ENST00000485550 C3P01024 1663 aa17.48■□□□□ 0.39
HMGN1-215ENST00000485550 KIF14Q15058 1648 aa17.47■□□□□ 0.39
HMGN1-215ENST00000485550 ATP1B4Q9UN42 357 aaPredicted RBP17.45■□□□□ 0.38
HMGN1-215ENST00000485550 EFCAB2Q5VUJ9 269 aa17.44■□□□□ 0.38
HMGN1-215ENST00000485550 MYT1LQ9UL68 1186 aa17.44■□□□□ 0.38
HMGN1-215ENST00000485550 DIP2CQ9Y2E4 1556 aa17.44■□□□□ 0.38
HMGN1-215ENST00000485550 KDM5CP41229 1560 aa17.43■□□□□ 0.38
HMGN1-215ENST00000485550 ZNF518AQ6AHZ1 1483 aa17.43■□□□□ 0.38
HMGN1-215ENST00000485550 PPP4R3CPQ6ZMV5 832 aa17.42■□□□□ 0.38
HMGN1-215ENST00000485550 AFAP1Q8N556 730 aa17.42■□□□□ 0.38
HMGN1-215ENST00000485550 ABCA6Q8N139 1617 aa17.42■□□□□ 0.38
HMGN1-215ENST00000485550 ARHGAP5Q13017 1502 aa17.42■□□□□ 0.38
HMGN1-215ENST00000485550 CDC42BPBQ9Y5S2 1711 aa17.41■□□□□ 0.38
HMGN1-215ENST00000485550 PTPRTO14522 1441 aa17.41■□□□□ 0.38
HMGN1-215ENST00000485550 LTBP4Q8N2S1 1624 aa17.41■□□□□ 0.38
HMGN1-215ENST00000485550 LRRIQ1Q96JM4 1722 aa17.4■□□□□ 0.38
HMGN1-215ENST00000485550 REREQ9P2R6 1566 aa17.37■□□□□ 0.37
HMGN1-215ENST00000485550 ESF1Q9H501 851 aaKnown RBP17.34■□□□□ 0.37
HMGN1-215ENST00000485550 ITSN2Q9NZM3 1697 aa17.34■□□□□ 0.37
HMGN1-215ENST00000485550 CDK11AQ9UQ88 783 aaPredicted RBP17.34■□□□□ 0.37
HMGN1-215ENST00000485550 SUPT6HQ7KZ85 1726 aaKnown RBP17.33■□□□□ 0.37
HMGN1-215ENST00000485550 KIDINS220Q9ULH0 1771 aa17.33■□□□□ 0.36
HMGN1-215ENST00000485550 IQSEC2Q5JU85 1478 aa17.32■□□□□ 0.36
HMGN1-215ENST00000485550 TROQ12816 1431 aaPredicted RBP17.32■□□□□ 0.36
HMGN1-215ENST00000485550 NCOA1Q15788 1441 aa17.32■□□□□ 0.36
HMGN1-215ENST00000485550 FMN1Q68DA7 1419 aa17.32■□□□□ 0.36
HMGN1-215ENST00000485550 TRAPPC8Q9Y2L5 1435 aa17.32■□□□□ 0.36
HMGN1-215ENST00000485550 ARHGAP35Q9NRY4 1499 aa17.31■□□□□ 0.36
HMGN1-215ENST00000485550 MLH3Q9UHC1 1453 aa17.31■□□□□ 0.36
HMGN1-215ENST00000485550 CAMSAP1Q5T5Y3 1602 aa17.31■□□□□ 0.36
HMGN1-215ENST00000485550 PREX2Q70Z35 1606 aa17.31■□□□□ 0.36
HMGN1-215ENST00000485550 AGLP35573 1532 aa17.31■□□□□ 0.36
HMGN1-215ENST00000485550 CLIP1P30622 1438 aa17.3■□□□□ 0.36
HMGN1-215ENST00000485550 ABCC1P33527 1531 aa17.29■□□□□ 0.36
HMGN1-215ENST00000485550 CDC42BPAQ5VT25 1732 aa17.27■□□□□ 0.36
HMGN1-215ENST00000485550 MROH2AA6NES4 1674 aa17.27■□□□□ 0.36
HMGN1-215ENST00000485550 CNTLNQ9NXG0 1405 aa17.25■□□□□ 0.35
HMGN1-215ENST00000485550 ZNF335Q9H4Z2 1342 aaPredicted RBP17.24■□□□□ 0.35
HMGN1-215ENST00000485550 NCKAP5LQ9HCH0 1330 aa17.24■□□□□ 0.35
HMGN1-215ENST00000485550 CLTCQ00610 1675 aaKnown RBP17.24■□□□□ 0.35
HMGN1-215ENST00000485550 UBAP1LF5GYI3 381 aa17.24■□□□□ 0.35
HMGN1-215ENST00000485550 ZNF142P52746 1687 aaPredicted RBP17.22■□□□□ 0.35
HMGN1-215ENST00000485550 MYO3AQ8NEV4 1616 aa17.21■□□□□ 0.35
HMGN1-215ENST00000485550 SAMD9LQ8IVG5 1584 aa17.2■□□□□ 0.34
HMGN1-215ENST00000485550 NPATQ14207 1427 aa17.2■□□□□ 0.34
HMGN1-215ENST00000485550 ZMYM3Q14202 1370 aa17.19■□□□□ 0.34
HMGN1-215ENST00000485550 CEP170BQ9Y4F5 1589 aaPredicted RBP17.17■□□□□ 0.34
HMGN1-215ENST00000485550 ZNF777Q9ULD5 760 aaPredicted RBP17.16■□□□□ 0.34
HMGN1-215ENST00000485550 SYCP2Q9BX26 1530 aa17.16■□□□□ 0.34
HMGN1-215ENST00000485550 PLA2R1Q13018 1463 aa17.14■□□□□ 0.33
HMGN1-215ENST00000485550 PKD2Q13563 968 aa17.13■□□□□ 0.33
HMGN1-215ENST00000485550 MED1Q15648 1581 aaPredicted RBP17.13■□□□□ 0.33
HMGN1-215ENST00000485550 TCOF1Q13428 1488 aaKnown RBP17.12■□□□□ 0.33
HMGN1-215ENST00000485550 CCDC18Q5T9S5 1454 aa17.12■□□□□ 0.33
HMGN1-215ENST00000485550 ATP7AQ04656 1500 aa17.12■□□□□ 0.33
HMGN1-215ENST00000485550 SPAG9O60271 1321 aaKnown RBP17.12■□□□□ 0.33
HMGN1-215ENST00000485550 POLR1AO95602 1720 aaPredicted RBP17.11■□□□□ 0.33
HMGN1-215ENST00000485550 DCAF8L1A6NGE4 600 aa17.11■□□□□ 0.33
HMGN1-215ENST00000485550 PTPRKQ15262 1439 aa17.11■□□□□ 0.33
HMGN1-215ENST00000485550 CASKIN1Q8WXD9 1431 aa17.11■□□□□ 0.33
HMGN1-215ENST00000485550 PLXNC1O60486 1568 aa17.11■□□□□ 0.33
HMGN1-215ENST00000485550 INO80Q9ULG1 1556 aaPredicted RBP17.11■□□□□ 0.33
HMGN1-215ENST00000485550 HOXD11P31277 338 aaPredicted RBP17.1■□□□□ 0.33
HMGN1-215ENST00000485550 HNRNPMP52272 730 aaKnown RBP eCLIP17.1■□□□□ 0.33
HMGN1-215ENST00000485550 PIP4K2BP78356 416 aa17.09■□□□□ 0.33
HMGN1-215ENST00000485550 GGT6Q6P531 493 aa17.09■□□□□ 0.33
HMGN1-215ENST00000485550 DNMT1P26358 1616 aaKnown RBP17.08■□□□□ 0.32
HMGN1-215ENST00000485550 A2MP01023 1474 aa17.08■□□□□ 0.32
HMGN1-215ENST00000485550 HSPA1LP34931 641 aa17.08■□□□□ 0.32
HMGN1-215ENST00000485550 CNKSR2Q8WXI2 1034 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms