RNA–Protein interactions for RNA: ENST00000481173.1

CCNL1-223, Transcript of cyclin L1, human

TSL 2

Gene CCNL1, Length 571 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-223	ENST00000481173	RIMBP2	O15034	1052 aa		11.22	□□□□□ -0.61
CCNL1-223	ENST00000481173	ECM2	O94769	699 aa	Predicted RBP	11.22	□□□□□ -0.61
CCNL1-223	ENST00000481173	NLRP6	P59044	892 aa		11.21	□□□□□ -0.61
CCNL1-223	ENST00000481173	FBXO22	Q8NEZ5	403 aa		11.2	□□□□□ -0.62
CCNL1-223	ENST00000481173	TAOK2	Q9UL54	1235 aa		11.2	□□□□□ -0.62
CCNL1-223	ENST00000481173	STK25	O00506	426 aa		11.19	□□□□□ -0.62
CCNL1-223	ENST00000481173	VARS2	Q5ST30	1063 aa	Known RBP	11.17	□□□□□ -0.62
CCNL1-223	ENST00000481173	MFRP	Q9BY79	579 aa		11.17	□□□□□ -0.62
CCNL1-223	ENST00000481173	RGL2	O15211	777 aa		11.15	□□□□□ -0.62
CCNL1-223	ENST00000481173	PKD2	Q13563	968 aa		11.15	□□□□□ -0.62
CCNL1-223	ENST00000481173	GPR153	Q6NV75	609 aa		11.14	□□□□□ -0.63
CCNL1-223	ENST00000481173	ZSWIM6	Q9HCJ5	1215 aa		11.14	□□□□□ -0.63
CCNL1-223	ENST00000481173	ARSI	Q5FYB1	569 aa		11.11	□□□□□ -0.63
CCNL1-223	ENST00000481173	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
CCNL1-223	ENST00000481173	C2orf72	A6NCS6	295 aa		11.06	□□□□□ -0.64
CCNL1-223	ENST00000481173	ZNF687	Q8N1G0	1237 aa		11.05	□□□□□ -0.64
CCNL1-223	ENST00000481173	KIF3C	O14782	793 aa		11.03	□□□□□ -0.64
CCNL1-223	ENST00000481173	PPP1R37	O75864	691 aa		11.01	□□□□□ -0.65
CCNL1-223	ENST00000481173	ZNF316	A6NFI3	1004 aa	Predicted RBP	11	□□□□□ -0.65
CCNL1-223	ENST00000481173	RNF166	Q96A37	237 aa	Predicted RBP	10.98	□□□□□ -0.65
CCNL1-223	ENST00000481173	NUDT7	P0C024	238 aa		10.97	□□□□□ -0.65
CCNL1-223	ENST00000481173	TMC2	Q8TDI7	906 aa		10.97	□□□□□ -0.65
CCNL1-223	ENST00000481173	ANKRD13D	Q6ZTN6	518 aa		10.95	□□□□□ -0.66
CCNL1-223	ENST00000481173	MYT1L	Q9UL68	1186 aa		10.95	□□□□□ -0.66
CCNL1-223	ENST00000481173	PCDHGA4	Q9Y5G9	962 aa		10.94	□□□□□ -0.66
CCNL1-223	ENST00000481173	LHX6	Q9UPM6	363 aa		10.91	□□□□□ -0.66
CCNL1-223	ENST00000481173	SLC34A2	O95436	690 aa		10.89	□□□□□ -0.67
CCNL1-223	ENST00000481173	LSM11	P83369	360 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
CCNL1-223	ENST00000481173	HS6ST3	Q8IZP7	471 aa		10.87	□□□□□ -0.67
CCNL1-223	ENST00000481173	AXIN2	Q9Y2T1	843 aa		10.87	□□□□□ -0.67
CCNL1-223	ENST00000481173	POTEE	Q6S8J3	1075 aa		10.86	□□□□□ -0.67
CCNL1-223	ENST00000481173	CHGA	P10645	457 aa	Known RBP	10.84	□□□□□ -0.67
CCNL1-223	ENST00000481173	PTGER2	P43116	358 aa		10.84	□□□□□ -0.67
CCNL1-223	ENST00000481173	PBX2	P40425	430 aa		10.81	□□□□□ -0.68
CCNL1-223	ENST00000481173	PLPP6	Q8IY26	295 aa		10.81	□□□□□ -0.68
CCNL1-223	ENST00000481173	FOXK1	P85037	733 aa		10.78	□□□□□ -0.68
CCNL1-223	ENST00000481173	DSG2	Q14126	1118 aa		10.78	□□□□□ -0.68
CCNL1-223	ENST00000481173	PTCD2	Q8WV60	388 aa	Known RBP	10.78	□□□□□ -0.68
CCNL1-223	ENST00000481173	GPHN	Q9NQX3	736 aa	Predicted RBP	10.78	□□□□□ -0.68
CCNL1-223	ENST00000481173	NKX1-1	Q15270	411 aa	Predicted RBP	10.77	□□□□□ -0.69
CCNL1-223	ENST00000481173	KDM4F	A0A1W2PPD8	638 aa		10.76	□□□□□ -0.69
CCNL1-223	ENST00000481173	ARHGAP33	O14559	1287 aa		10.74	□□□□□ -0.69
CCNL1-223	ENST00000481173	PSD	A5PKW4	1024 aa	Predicted RBP	10.73	□□□□□ -0.69
CCNL1-223	ENST00000481173	ADGRD1	Q6QNK2	874 aa		10.72	□□□□□ -0.69
CCNL1-223	ENST00000481173	PSEN2	P49810	448 aa		10.71	□□□□□ -0.69
CCNL1-223	ENST00000481173	DMRTA1	Q5VZB9	504 aa		10.7	□□□□□ -0.7
CCNL1-223	ENST00000481173	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
CCNL1-223	ENST00000481173	TBC1D12	O60347	775 aa		10.68	□□□□□ -0.7
CCNL1-223	ENST00000481173	PPP4R3B	Q5MIZ7	849 aa		10.67	□□□□□ -0.7
CCNL1-223	ENST00000481173	DNAJC5	Q9H3Z4	198 aa		10.67	□□□□□ -0.7
CCNL1-223	ENST00000481173	OXER1	Q8TDS5	423 aa		10.65	□□□□□ -0.7
CCNL1-223	ENST00000481173	CRISPLD2	Q9H0B8	497 aa		10.64	□□□□□ -0.71
CCNL1-223	ENST00000481173	PPP1R15B	Q5SWA1	713 aa		10.63	□□□□□ -0.71
CCNL1-223	ENST00000481173	KCNK17	Q96T54	332 aa		10.63	□□□□□ -0.71
CCNL1-223	ENST00000481173	RYDEN	Q9NUL5	291 aa	Known RBP	10.63	□□□□□ -0.71
CCNL1-223	ENST00000481173	TK2	O00142	265 aa		10.62	□□□□□ -0.71
CCNL1-223	ENST00000481173	HR	O43593	1189 aa		10.61	□□□□□ -0.71
CCNL1-223	ENST00000481173	HCST	Q9UBK5	93 aa		10.61	□□□□□ -0.71
CCNL1-223	ENST00000481173	NCKAP5L	Q9HCH0	1330 aa		10.6	□□□□□ -0.71
CCNL1-223	ENST00000481173	ZNF454	Q8N9F8	522 aa		10.59	□□□□□ -0.71
CCNL1-223	ENST00000481173	PLA2G2E	Q9NZK7	142 aa		10.58	□□□□□ -0.72
CCNL1-223	ENST00000481173	GTPBP6	O43824	516 aa	Predicted RBP	10.57	□□□□□ -0.72
CCNL1-223	ENST00000481173	KCTD12	Q96CX2	325 aa	Known RBP	10.57	□□□□□ -0.72
CCNL1-223	ENST00000481173	PDE4A	P27815	886 aa		10.56	□□□□□ -0.72
CCNL1-223	ENST00000481173	KCNH8	Q96L42	1107 aa		10.56	□□□□□ -0.72
CCNL1-223	ENST00000481173	DCAF8L2	P0C7V8	631 aa		10.55	□□□□□ -0.72
CCNL1-223	ENST00000481173	STAC3	Q96MF2	364 aa		10.55	□□□□□ -0.72
CCNL1-223	ENST00000481173	LARP6	Q9BRS8	491 aa	Known RBP	10.54	□□□□□ -0.72
CCNL1-223	ENST00000481173	VPS9D1	Q9Y2B5	631 aa		10.53	□□□□□ -0.72
CCNL1-223	ENST00000481173	FOSB	P53539	338 aa		10.52	□□□□□ -0.73
CCNL1-223	ENST00000481173	BCL2L12	Q9HB09	334 aa		10.51	□□□□□ -0.73
CCNL1-223	ENST00000481173	EVI5	O60447	810 aa		10.5	□□□□□ -0.73
CCNL1-223	ENST00000481173	DDX27	Q96GQ7	796 aa	Known RBP	10.5	□□□□□ -0.73
CCNL1-223	ENST00000481173	PTPRE	P23469	700 aa		10.48	□□□□□ -0.73
CCNL1-223	ENST00000481173	PTPN5	P54829	565 aa		10.47	□□□□□ -0.73
CCNL1-223	ENST00000481173	JPH4	Q96JJ6	628 aa		10.47	□□□□□ -0.73
CCNL1-223	ENST00000481173	ADAM33	Q9BZ11	813 aa		10.47	□□□□□ -0.73
CCNL1-223	ENST00000481173	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.47	□□□□□ -0.73
CCNL1-223	ENST00000481173	MAP3K9	P80192	1104 aa		10.45	□□□□□ -0.74
CCNL1-223	ENST00000481173	MFSD10	Q14728	455 aa		10.45	□□□□□ -0.74
CCNL1-223	ENST00000481173	CADPS2	Q86UW7	1296 aa		10.45	□□□□□ -0.74
CCNL1-223	ENST00000481173	ZDHHC16	Q969W1	377 aa		10.45	□□□□□ -0.74
CCNL1-223	ENST00000481173	EMILIN3	Q9NT22	766 aa		10.45	□□□□□ -0.74
CCNL1-223	ENST00000481173	ZBED2	Q9BTP6	218 aa		10.44	□□□□□ -0.74
CCNL1-223	ENST00000481173	SLC4A5	Q9BY07	1137 aa		10.44	□□□□□ -0.74
CCNL1-223	ENST00000481173	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.41	□□□□□ -0.74
CCNL1-223	ENST00000481173	GOLGA8CP	A6NN73	597 aa		10.39	□□□□□ -0.75
CCNL1-223	ENST00000481173	THSD4	Q6ZMP0	1018 aa		10.39	□□□□□ -0.75
CCNL1-223	ENST00000481173	MRPL50	Q8N5N7	158 aa	Known RBP	10.39	□□□□□ -0.75
CCNL1-223	ENST00000481173	PCDHGA10	Q9Y5H3	936 aa		10.38	□□□□□ -0.75
CCNL1-223	ENST00000481173	WNT2B	Q93097	391 aa		10.37	□□□□□ -0.75
CCNL1-223	ENST00000481173	PROX2	Q3B8N5	592 aa		10.35	□□□□□ -0.75
CCNL1-223	ENST00000481173	COL9A1	P20849	921 aa		10.34	□□□□□ -0.75
CCNL1-223	ENST00000481173	NBPF3	Q9H094	633 aa		10.34	□□□□□ -0.75
CCNL1-223	ENST00000481173	PPP1R3G	B7ZBB8	358 aa		10.33	□□□□□ -0.76
CCNL1-223	ENST00000481173	TYW1B	Q6NUM6	668 aa		10.32	□□□□□ -0.76
CCNL1-223	ENST00000481173	DPYSL4	O14531	572 aa		10.31	□□□□□ -0.76
CCNL1-223	ENST00000481173	PHF14	O94880	888 aa		10.3	□□□□□ -0.76
CCNL1-223	ENST00000481173	FBXW7	Q969H0	707 aa		10.29	□□□□□ -0.76
CCNL1-223	ENST00000481173	RABGEF1	Q9UJ41	708 aa		10.29	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms