RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 CCDC173Q0VFZ6 552 aa6.77□□□□□ -1.33
USF3-202ENST00000478658 ANKRD20A12PQ8NF67 263 aa6.77□□□□□ -1.33
USF3-202ENST00000478658 HOOK1Q9UJC3 728 aaKnown RBP6.77□□□□□ -1.33
USF3-202ENST00000478658 KIF3BO15066 747 aa6.77□□□□□ -1.33
USF3-202ENST00000478658 AMOTL1Q8IY63 956 aa6.77□□□□□ -1.33
USF3-202ENST00000478658 IPO7O95373 1038 aaKnown RBP6.76□□□□□ -1.33
USF3-202ENST00000478658 CENPJQ9HC77 1338 aaPredicted RBP6.76□□□□□ -1.33
USF3-202ENST00000478658 PPP1R15AO75807 674 aaPredicted RBP6.76□□□□□ -1.33
USF3-202ENST00000478658 MAP3K9P80192 1104 aa6.76□□□□□ -1.33
USF3-202ENST00000478658 NAP1L5Q96NT1 182 aaPredicted RBP6.76□□□□□ -1.33
USF3-202ENST00000478658 KIF16BQ96L93 1317 aa6.76□□□□□ -1.33
USF3-202ENST00000478658 G3V3G9 751 aa6.76□□□□□ -1.33
USF3-202ENST00000478658 EZRP15311 586 aaKnown RBP6.76□□□□□ -1.33
USF3-202ENST00000478658 DCAF8Q5TAQ9 597 aa6.76□□□□□ -1.33
USF3-202ENST00000478658 CFAP57Q96MR6 1250 aa6.76□□□□□ -1.33
USF3-202ENST00000478658 KIAA1211Q6ZU35 1233 aa6.76□□□□□ -1.33
USF3-202ENST00000478658 ISY1Q9ULR0 285 aaKnown RBP6.76□□□□□ -1.33
USF3-202ENST00000478658 TONSLQ96HA7 1378 aa6.76□□□□□ -1.33
USF3-202ENST00000478658 ODF2Q5BJF6 829 aa6.75□□□□□ -1.33
USF3-202ENST00000478658 PPM1EQ8WY54 764 aa6.75□□□□□ -1.33
USF3-202ENST00000478658 R3HCC1Q9Y3T6 440 aaKnown RBP6.75□□□□□ -1.33
USF3-202ENST00000478658 NUDCQ9Y266 331 aa6.75□□□□□ -1.33
USF3-202ENST00000478658 TMC1Q8TDI8 760 aa6.75□□□□□ -1.33
USF3-202ENST00000478658 GBP4Q96PP9 640 aa6.75□□□□□ -1.33
USF3-202ENST00000478658 CTDP1Q9Y5B0 961 aaPredicted RBP6.74□□□□□ -1.33
USF3-202ENST00000478658 GOLGA6L7A0A1B0GV03 622 aa6.74□□□□□ -1.33
USF3-202ENST00000478658 HSP90AB1P08238 724 aaKnown RBP6.74□□□□□ -1.33
USF3-202ENST00000478658 TXLNBQ8N3L3 684 aa6.74□□□□□ -1.33
USF3-202ENST00000478658 GRIPAP1Q4V328 841 aa6.74□□□□□ -1.33
USF3-202ENST00000478658 FYB1O15117 783 aa6.73□□□□□ -1.33
USF3-202ENST00000478658 PKNOX2Q96KN3 472 aa6.73□□□□□ -1.33
USF3-202ENST00000478658 DHX8Q14562 1220 aaKnown RBP6.73□□□□□ -1.33
USF3-202ENST00000478658 HSCBQ8IWL3 235 aa6.73□□□□□ -1.33
USF3-202ENST00000478658 CCDC175P0C221 793 aa6.73□□□□□ -1.33
USF3-202ENST00000478658 APPP05067 770 aa6.72□□□□□ -1.33
USF3-202ENST00000478658 CWC22Q9HCG8 908 aaKnown RBP6.72□□□□□ -1.33
USF3-202ENST00000478658 FAM114A2Q9NRY5 505 aa6.72□□□□□ -1.33
USF3-202ENST00000478658 SMC4Q9NTJ3 1288 aa6.72□□□□□ -1.33
USF3-202ENST00000478658 CWC15Q9P013 229 aaKnown RBP6.72□□□□□ -1.33
USF3-202ENST00000478658 RUFY1Q96T51 708 aa6.72□□□□□ -1.33
USF3-202ENST00000478658 MAPK8IP3Q9UPT6 1336 aa6.71□□□□□ -1.33
USF3-202ENST00000478658 SPATA24Q86W54 205 aa6.71□□□□□ -1.34
USF3-202ENST00000478658 RASSF8Q8NHQ8 419 aa6.71□□□□□ -1.34
USF3-202ENST00000478658 TRIM34Q9BYJ4 488 aa6.71□□□□□ -1.34
USF3-202ENST00000478658 RWDD1Q9H446 243 aaPredicted RBP6.71□□□□□ -1.34
USF3-202ENST00000478658 ARXQ96QS3 562 aa6.71□□□□□ -1.34
USF3-202ENST00000478658 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.71□□□□□ -1.34
USF3-202ENST00000478658 V9GYY5 206 aaPredicted RBP6.71□□□□□ -1.34
USF3-202ENST00000478658 NOL10Q9BSC4 688 aaKnown RBP6.7□□□□□ -1.34
USF3-202ENST00000478658 IPO9Q96P70 1041 aaKnown RBP6.7□□□□□ -1.34
USF3-202ENST00000478658 GTPBP4Q9BZE4 634 aaKnown RBP6.7□□□□□ -1.34
USF3-202ENST00000478658 MARCH6O60337 910 aa6.7□□□□□ -1.34
USF3-202ENST00000478658 MNS1Q8NEH6 495 aa6.7□□□□□ -1.34
USF3-202ENST00000478658 ERCC4Q92889 916 aaPredicted RBP6.7□□□□□ -1.34
USF3-202ENST00000478658 VIMP08670 466 aaKnown RBP6.7□□□□□ -1.34
USF3-202ENST00000478658 CCDC43Q96MW1 224 aaKnown RBP6.7□□□□□ -1.34
USF3-202ENST00000478658 DDX11L8A8MPP1 907 aa6.69□□□□□ -1.34
USF3-202ENST00000478658 WDHD1O75717 1129 aaPredicted RBP6.69□□□□□ -1.34
USF3-202ENST00000478658 STAMBPO95630 424 aa6.69□□□□□ -1.34
USF3-202ENST00000478658 DIAPH3Q9NSV4 1193 aa6.69□□□□□ -1.34
USF3-202ENST00000478658 RABEP1Q15276 862 aa6.69□□□□□ -1.34
USF3-202ENST00000478658 TPD52L1Q16890 204 aaPredicted RBP6.69□□□□□ -1.34
USF3-202ENST00000478658 RTF1Q92541 710 aaKnown RBP6.69□□□□□ -1.34
USF3-202ENST00000478658 PLCB2Q00722 1185 aa6.68□□□□□ -1.34
USF3-202ENST00000478658 ATP6V1DQ9Y5K8 247 aa6.68□□□□□ -1.34
USF3-202ENST00000478658 ERLIN2O94905 339 aa6.68□□□□□ -1.34
USF3-202ENST00000478658 FAM161AQ3B820 660 aa6.68□□□□□ -1.34
USF3-202ENST00000478658 PES1O00541 588 aaKnown RBP6.68□□□□□ -1.34
USF3-202ENST00000478658 CT47A1Q5JQC4 288 aaPredicted RBP6.68□□□□□ -1.34
USF3-202ENST00000478658 ANKRD18BA2A2Z9 1011 aa6.68□□□□□ -1.34
USF3-202ENST00000478658 CHGAP10645 457 aaKnown RBP6.68□□□□□ -1.34
USF3-202ENST00000478658 ZNHIT6Q9NWK9 470 aaKnown RBP6.67□□□□□ -1.34
USF3-202ENST00000478658 CHMP3Q9Y3E7 222 aa6.67□□□□□ -1.34
USF3-202ENST00000478658 HSP90AA2PQ14568 343 aaPredicted RBP6.66□□□□□ -1.34
USF3-202ENST00000478658 CCP110O43303 1012 aa6.66□□□□□ -1.34
USF3-202ENST00000478658 LUC7LQ9NQ29 371 aaKnown RBP6.66□□□□□ -1.34
USF3-202ENST00000478658 IRX6P78412 446 aaPredicted RBP6.65□□□□□ -1.34
USF3-202ENST00000478658 PAF1Q8N7H5 531 aa6.65□□□□□ -1.34
USF3-202ENST00000478658 TIMELESSQ9UNS1 1208 aa6.65□□□□□ -1.34
USF3-202ENST00000478658 USP8P40818 1118 aa6.65□□□□□ -1.34
USF3-202ENST00000478658 AKAP17AQ02040 695 aaKnown RBP6.65□□□□□ -1.34
USF3-202ENST00000478658 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.65□□□□□ -1.34
USF3-202ENST00000478658 CNGA1P29973 690 aa6.65□□□□□ -1.34
USF3-202ENST00000478658 GIGYF2Q6Y7W6 1299 aaKnown RBP6.65□□□□□ -1.35
USF3-202ENST00000478658 POLR3GO15318 223 aaPredicted RBP6.65□□□□□ -1.35
USF3-202ENST00000478658 DYDC1Q8WWB3 177 aa6.65□□□□□ -1.35
USF3-202ENST00000478658 GBP2P32456 591 aaPredicted RBP6.64□□□□□ -1.35
USF3-202ENST00000478658 CHMP5Q9NZZ3 219 aa6.64□□□□□ -1.35
USF3-202ENST00000478658 VPS53Q5VIR6 699 aa6.64□□□□□ -1.35
USF3-202ENST00000478658 ERC1Q8IUD2 1116 aa6.64□□□□□ -1.35
USF3-202ENST00000478658 IPO8O15397 1037 aaKnown RBP6.64□□□□□ -1.35
USF3-202ENST00000478658 DDX23Q9BUQ8 820 aaKnown RBP6.64□□□□□ -1.35
USF3-202ENST00000478658 EIF3JO75822 258 aaKnown RBP6.63□□□□□ -1.35
USF3-202ENST00000478658 MTERF4Q7Z6M4 381 aaKnown RBP6.63□□□□□ -1.35
USF3-202ENST00000478658 CCDC146Q8IYE0 955 aa6.63□□□□□ -1.35
USF3-202ENST00000478658 KANK1Q14678 1352 aa6.63□□□□□ -1.35
USF3-202ENST00000478658 TSPY4P0CV99 314 aa6.63□□□□□ -1.35
USF3-202ENST00000478658 TSPY10P0CW01 314 aa6.63□□□□□ -1.35
USF3-202ENST00000478658 CPLX2Q6PUV4 134 aaKnown RBP6.63□□□□□ -1.35
USF3-202ENST00000478658 CCDC91Q7Z6B0 441 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms