RNA–Protein interactions for RNA: ENST00000477485.1

RTFDC1-206, Transcript of Protein RTF2 homolog, humanhuman

TSL 3

Gene RTFDC1, Length 464 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-206ENST00000477485 HECW1Q76N89 1606 aa11.17□□□□□ -0.62
RTFDC1-206ENST00000477485 ZMYM4Q5VZL5 1548 aa11.17□□□□□ -0.62
RTFDC1-206ENST00000477485 HSPA2P54652 639 aa11.16□□□□□ -0.62
RTFDC1-206ENST00000477485 YEATS2Q9ULM3 1422 aa11.16□□□□□ -0.62
RTFDC1-206ENST00000477485 PREX1Q8TCU6 1659 aa11.14□□□□□ -0.63
RTFDC1-206ENST00000477485 MYT1LQ9UL68 1186 aa11.13□□□□□ -0.63
RTFDC1-206ENST00000477485 SCAPERQ9BY12 1400 aa11.12□□□□□ -0.63
RTFDC1-206ENST00000477485 KIF14Q15058 1648 aa11.12□□□□□ -0.63
RTFDC1-206ENST00000477485 LRRIQ1Q96JM4 1722 aa11.11□□□□□ -0.63
RTFDC1-206ENST00000477485 MAGI2Q86UL8 1455 aa11.11□□□□□ -0.63
RTFDC1-206ENST00000477485 UBTFP17480 764 aaKnown RBP11.1□□□□□ -0.63
RTFDC1-206ENST00000477485 ARHGAP5Q13017 1502 aa11.09□□□□□ -0.63
RTFDC1-206ENST00000477485 PLCH2O75038 1416 aa11.09□□□□□ -0.63
RTFDC1-206ENST00000477485 C9orf84Q5VXU9 1444 aa11.09□□□□□ -0.63
RTFDC1-206ENST00000477485 FMN1Q68DA7 1419 aa11.08□□□□□ -0.64
RTFDC1-206ENST00000477485 ATP10AO60312 1499 aa11.07□□□□□ -0.64
RTFDC1-206ENST00000477485 ARHGEF12Q9NZN5 1544 aa11.07□□□□□ -0.64
RTFDC1-206ENST00000477485 CDC42BPBQ9Y5S2 1711 aa11.06□□□□□ -0.64
RTFDC1-206ENST00000477485 EFCAB2Q5VUJ9 269 aa11.06□□□□□ -0.64
RTFDC1-206ENST00000477485 CDK11AQ9UQ88 783 aaPredicted RBP11.06□□□□□ -0.64
RTFDC1-206ENST00000477485 CLIP1P30622 1438 aa11.06□□□□□ -0.64
RTFDC1-206ENST00000477485 CEBPAP49715 358 aaPredicted RBP11.05□□□□□ -0.64
RTFDC1-206ENST00000477485 CERKQ8TCT0 537 aa11.05□□□□□ -0.64
RTFDC1-206ENST00000477485 ZNF518AQ6AHZ1 1483 aa11.05□□□□□ -0.64
RTFDC1-206ENST00000477485 C3P01024 1663 aa11.04□□□□□ -0.64
RTFDC1-206ENST00000477485 DIP2CQ9Y2E4 1556 aa11.04□□□□□ -0.64
RTFDC1-206ENST00000477485 STRCQ7RTU9 1775 aa11.04□□□□□ -0.64
RTFDC1-206ENST00000477485 ABCA6Q8N139 1617 aa11.04□□□□□ -0.64
RTFDC1-206ENST00000477485 ARHGAP35Q9NRY4 1499 aa11.04□□□□□ -0.64
RTFDC1-206ENST00000477485 ITSN2Q9NZM3 1697 aa11.04□□□□□ -0.64
RTFDC1-206ENST00000477485 PREX2Q70Z35 1606 aa11.03□□□□□ -0.64
RTFDC1-206ENST00000477485 KDM5CP41229 1560 aa11.03□□□□□ -0.64
RTFDC1-206ENST00000477485 TROQ12816 1431 aaPredicted RBP11.02□□□□□ -0.64
RTFDC1-206ENST00000477485 UHRF1BP1Q6BDS2 1440 aa11.02□□□□□ -0.64
RTFDC1-206ENST00000477485 ESF1Q9H501 851 aaKnown RBP11.02□□□□□ -0.65
RTFDC1-206ENST00000477485 SETD1BQ9UPS6 1966 aaKnown RBP11.02□□□□□ -0.65
RTFDC1-206ENST00000477485 CDC42BPAQ5VT25 1732 aa11.01□□□□□ -0.65
RTFDC1-206ENST00000477485 SUPT6HQ7KZ85 1726 aaKnown RBP11.01□□□□□ -0.65
RTFDC1-206ENST00000477485 AFAP1Q8N556 730 aa11.01□□□□□ -0.65
RTFDC1-206ENST00000477485 SENP3Q9H4L4 574 aaPredicted RBP11.01□□□□□ -0.65
RTFDC1-206ENST00000477485 ABCC1P33527 1531 aa10.99□□□□□ -0.65
RTFDC1-206ENST00000477485 REREQ9P2R6 1566 aa10.98□□□□□ -0.65
RTFDC1-206ENST00000477485 KIDINS220Q9ULH0 1771 aa10.98□□□□□ -0.65
RTFDC1-206ENST00000477485 DMRT2Q9Y5R5 561 aa10.97□□□□□ -0.65
RTFDC1-206ENST00000477485 DISP3Q9P2K9 1392 aa10.97□□□□□ -0.65
RTFDC1-206ENST00000477485 CCDC18Q5T9S5 1454 aa10.97□□□□□ -0.65
RTFDC1-206ENST00000477485 TRAPPC8Q9Y2L5 1435 aa10.95□□□□□ -0.66
RTFDC1-206ENST00000477485 ZNF777Q9ULD5 760 aaPredicted RBP10.95□□□□□ -0.66
RTFDC1-206ENST00000477485 CLTCQ00610 1675 aaKnown RBP10.95□□□□□ -0.66
RTFDC1-206ENST00000477485 MLH3Q9UHC1 1453 aa10.94□□□□□ -0.66
RTFDC1-206ENST00000477485 MROH2AA6NES4 1674 aa10.94□□□□□ -0.66
RTFDC1-206ENST00000477485 SPATA31D1Q6ZQQ2 1576 aa10.94□□□□□ -0.66
RTFDC1-206ENST00000477485 AGLP35573 1532 aa10.93□□□□□ -0.66
RTFDC1-206ENST00000477485 SYCP2Q9BX26 1530 aa10.93□□□□□ -0.66
RTFDC1-206ENST00000477485 CASKIN1Q8WXD9 1431 aa10.92□□□□□ -0.66
RTFDC1-206ENST00000477485 SAMD9LQ8IVG5 1584 aa10.92□□□□□ -0.66
RTFDC1-206ENST00000477485 CAMSAP1Q5T5Y3 1602 aa10.91□□□□□ -0.66
RTFDC1-206ENST00000477485 MYO3AQ8NEV4 1616 aa10.91□□□□□ -0.66
RTFDC1-206ENST00000477485 FYCO1Q9BQS8 1478 aa10.9□□□□□ -0.66
RTFDC1-206ENST00000477485 PTPRTO14522 1441 aa10.9□□□□□ -0.66
RTFDC1-206ENST00000477485 CNTLNQ9NXG0 1405 aa10.9□□□□□ -0.66
RTFDC1-206ENST00000477485 ATP7AQ04656 1500 aa10.89□□□□□ -0.67
RTFDC1-206ENST00000477485 SPAG9O60271 1321 aaKnown RBP10.88□□□□□ -0.67
RTFDC1-206ENST00000477485 NCOA1Q15788 1441 aa10.88□□□□□ -0.67
RTFDC1-206ENST00000477485 ZNF142P52746 1687 aaPredicted RBP10.88□□□□□ -0.67
RTFDC1-206ENST00000477485 ADGBQ8N7X0 1667 aa10.88□□□□□ -0.67
RTFDC1-206ENST00000477485 LTBP4Q8N2S1 1624 aa10.87□□□□□ -0.67
RTFDC1-206ENST00000477485 INO80Q9ULG1 1556 aaPredicted RBP10.87□□□□□ -0.67
RTFDC1-206ENST00000477485 HNRNPMP52272 730 aaKnown RBP eCLIP10.87□□□□□ -0.67
RTFDC1-206ENST00000477485 ILDR2Q71H61 639 aa10.87□□□□□ -0.67
RTFDC1-206ENST00000477485 ZMYM3Q14202 1370 aa10.85□□□□□ -0.67
RTFDC1-206ENST00000477485 CEP170BQ9Y4F5 1589 aaPredicted RBP10.85□□□□□ -0.67
RTFDC1-206ENST00000477485 NCKAP5LQ9HCH0 1330 aa10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 NPATQ14207 1427 aa10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 GPATCH8Q9UKJ3 1502 aaKnown RBP10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 POLR1AO95602 1720 aaPredicted RBP10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 GGT6Q6P531 493 aa10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 CFDP1Q9UEE9 299 aaPredicted RBP10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 CCNB3Q8WWL7 1395 aa10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 A2MP01023 1474 aa10.84□□□□□ -0.67
RTFDC1-206ENST00000477485 PLXNC1O60486 1568 aa10.83□□□□□ -0.68
RTFDC1-206ENST00000477485 IQSEC2Q5JU85 1478 aa10.83□□□□□ -0.68
RTFDC1-206ENST00000477485 PLEKHH2Q8IVE3 1493 aa10.83□□□□□ -0.68
RTFDC1-206ENST00000477485 SOCS7O14512 581 aa10.83□□□□□ -0.68
RTFDC1-206ENST00000477485 MTUS2Q5JR59 1369 aa10.82□□□□□ -0.68
RTFDC1-206ENST00000477485 UBAP1LF5GYI3 381 aa10.82□□□□□ -0.68
RTFDC1-206ENST00000477485 ZNF335Q9H4Z2 1342 aaPredicted RBP10.82□□□□□ -0.68
RTFDC1-206ENST00000477485 TIAM1Q13009 1591 aa10.82□□□□□ -0.68
RTFDC1-206ENST00000477485 SCAF1Q9H7N4 1312 aaKnown RBP10.81□□□□□ -0.68
RTFDC1-206ENST00000477485 EHBP1L1Q8N3D4 1523 aa10.79□□□□□ -0.68
RTFDC1-206ENST00000477485 PTPRKQ15262 1439 aa10.78□□□□□ -0.68
RTFDC1-206ENST00000477485 KIAA1107Q9UPP5 1409 aa10.78□□□□□ -0.68
RTFDC1-206ENST00000477485 DNMT1P26358 1616 aaKnown RBP10.78□□□□□ -0.68
RTFDC1-206ENST00000477485 PLA2R1Q13018 1463 aa10.78□□□□□ -0.68
RTFDC1-206ENST00000477485 PKD2Q13563 968 aa10.77□□□□□ -0.69
RTFDC1-206ENST00000477485 PPP6R1Q9UPN7 881 aa10.77□□□□□ -0.69
RTFDC1-206ENST00000477485 ZNF644Q9H582 1327 aaPredicted RBP10.77□□□□□ -0.69
RTFDC1-206ENST00000477485 A2ML1A8K2U0 1454 aa10.75□□□□□ -0.69
RTFDC1-206ENST00000477485 TCOF1Q13428 1488 aaKnown RBP10.75□□□□□ -0.69
RTFDC1-206ENST00000477485 KDM5DQ9BY66 1539 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms