RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TARBP1Q13395 1621 aaKnown RBP7.47□□□□□ -1.21
SYNE1-220ENST00000471834 DNMT1P26358 1616 aaKnown RBP7.46□□□□□ -1.21
SYNE1-220ENST00000471834 FANCD2Q9BXW9 1451 aa7.46□□□□□ -1.21
SYNE1-220ENST00000471834 RALGAPBQ86X10 1494 aa7.46□□□□□ -1.21
SYNE1-220ENST00000471834 FHOD3Q2V2M9 1422 aa7.46□□□□□ -1.22
SYNE1-220ENST00000471834 MAGI2Q86UL8 1455 aa7.46□□□□□ -1.22
SYNE1-220ENST00000471834 ROCK2O75116 1388 aaKnown RBP7.46□□□□□ -1.22
SYNE1-220ENST00000471834 EPRSP07814 1512 aaKnown RBP7.45□□□□□ -1.22
SYNE1-220ENST00000471834 URB2Q14146 1524 aaKnown RBP7.45□□□□□ -1.22
SYNE1-220ENST00000471834 ADCY10Q96PN6 1610 aa7.44□□□□□ -1.22
SYNE1-220ENST00000471834 CLASP1Q7Z460 1538 aa7.44□□□□□ -1.22
SYNE1-220ENST00000471834 USP35Q9P2H5 1018 aa7.44□□□□□ -1.22
SYNE1-220ENST00000471834 ZNF608Q9ULD9 1512 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-220ENST00000471834 CTTNBP2Q8WZ74 1663 aa7.43□□□□□ -1.22
SYNE1-220ENST00000471834 E9PCH4 1651 aa7.43□□□□□ -1.22
SYNE1-220ENST00000471834 NEFLP07196 543 aa7.43□□□□□ -1.22
SYNE1-220ENST00000471834 NPC1L1Q9UHC9 1359 aa7.43□□□□□ -1.22
SYNE1-220ENST00000471834 LRRIQ1Q96JM4 1722 aa7.42□□□□□ -1.22
SYNE1-220ENST00000471834 CNGB1Q14028 1251 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-220ENST00000471834 KIAA0586Q9BVV6 1533 aa7.42□□□□□ -1.22
SYNE1-220ENST00000471834 POLR3GLQ9BT43 218 aa7.42□□□□□ -1.22
SYNE1-220ENST00000471834 ABCC5O15440 1437 aa7.42□□□□□ -1.22
SYNE1-220ENST00000471834 PARD3Q8TEW0 1356 aa7.42□□□□□ -1.22
SYNE1-220ENST00000471834 SUPT6HQ7KZ85 1726 aaKnown RBP7.42□□□□□ -1.22
SYNE1-220ENST00000471834 DISP1Q96F81 1524 aa7.41□□□□□ -1.22
SYNE1-220ENST00000471834 SYNJ2O15056 1496 aa7.41□□□□□ -1.22
SYNE1-220ENST00000471834 MS4A1P11836 297 aa7.41□□□□□ -1.22
SYNE1-220ENST00000471834 ITGAEP38570 1179 aa7.41□□□□□ -1.22
SYNE1-220ENST00000471834 KDM5CP41229 1560 aa7.41□□□□□ -1.22
SYNE1-220ENST00000471834 NCBP3Q53F19 620 aaKnown RBP7.4□□□□□ -1.22
SYNE1-220ENST00000471834 ABCC2Q92887 1545 aa7.4□□□□□ -1.22
SYNE1-220ENST00000471834 NUP160Q12769 1436 aa7.4□□□□□ -1.22
SYNE1-220ENST00000471834 NUP153P49790 1475 aaKnown RBP7.4□□□□□ -1.23
SYNE1-220ENST00000471834 BLMP54132 1417 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-220ENST00000471834 ADAMTS12P58397 1594 aa7.4□□□□□ -1.23
SYNE1-220ENST00000471834 SIN3AQ96ST3 1273 aa7.4□□□□□ -1.23
SYNE1-220ENST00000471834 DAPK1P53355 1430 aa7.39□□□□□ -1.23
SYNE1-220ENST00000471834 ZNF521Q96K83 1311 aa7.39□□□□□ -1.23
SYNE1-220ENST00000471834 BRD4O60885 1362 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-220ENST00000471834 TONSLQ96HA7 1378 aa7.39□□□□□ -1.23
SYNE1-220ENST00000471834 PRDM15P57071 1507 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-220ENST00000471834 CEP170Q5SW79 1584 aa7.39□□□□□ -1.23
SYNE1-220ENST00000471834 KDM6BO15054 1643 aa7.39□□□□□ -1.23
SYNE1-220ENST00000471834 PNISRQ8TF01 805 aaKnown RBP7.38□□□□□ -1.23
SYNE1-220ENST00000471834 KIF14Q15058 1648 aa7.38□□□□□ -1.23
SYNE1-220ENST00000471834 PLEKHH2Q8IVE3 1493 aa7.38□□□□□ -1.23
SYNE1-220ENST00000471834 KIF7Q2M1P5 1343 aa7.37□□□□□ -1.23
SYNE1-220ENST00000471834 KIAA1107Q9UPP5 1409 aa7.37□□□□□ -1.23
SYNE1-220ENST00000471834 FKBP8Q14318 412 aa7.37□□□□□ -1.23
SYNE1-220ENST00000471834 PDE3BQ13370 1112 aa7.37□□□□□ -1.23
SYNE1-220ENST00000471834 TROQ12816 1431 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-220ENST00000471834 ARHGEF5Q12774 1597 aa7.37□□□□□ -1.23
SYNE1-220ENST00000471834 PER1O15534 1290 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-220ENST00000471834 ESF1Q9H501 851 aaKnown RBP7.36□□□□□ -1.23
SYNE1-220ENST00000471834 ANP32CO43423 234 aa7.36□□□□□ -1.23
SYNE1-220ENST00000471834 DDX10Q13206 875 aaKnown RBP7.36□□□□□ -1.23
SYNE1-220ENST00000471834 MAST1Q9Y2H9 1570 aa7.35□□□□□ -1.23
SYNE1-220ENST00000471834 NBPF8Q3BBV2 869 aa7.35□□□□□ -1.23
SYNE1-220ENST00000471834 PLA2R1Q13018 1463 aa7.34□□□□□ -1.23
SYNE1-220ENST00000471834 RAD54L2Q9Y4B4 1467 aa7.34□□□□□ -1.23
SYNE1-220ENST00000471834 SCAPERQ9BY12 1400 aa7.34□□□□□ -1.23
SYNE1-220ENST00000471834 GPATCH8Q9UKJ3 1502 aaKnown RBP7.33□□□□□ -1.24
SYNE1-220ENST00000471834 NUDCQ9Y266 331 aa7.33□□□□□ -1.24
SYNE1-220ENST00000471834 SBNO2Q9Y2G9 1366 aa7.33□□□□□ -1.24
SYNE1-220ENST00000471834 HSPA5P11021 654 aaKnown RBP7.33□□□□□ -1.24
SYNE1-220ENST00000471834 EIF4G3O43432 1585 aaKnown RBP7.33□□□□□ -1.24
SYNE1-220ENST00000471834 COL17A1Q9UMD9 1497 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-220ENST00000471834 NESP48681 1621 aa7.33□□□□□ -1.24
SYNE1-220ENST00000471834 MTUS2Q5JR59 1369 aa7.33□□□□□ -1.24
SYNE1-220ENST00000471834 EIF4G2P78344 907 aaKnown RBP eCLIP7.33□□□□□ -1.24
SYNE1-220ENST00000471834 L3MBTL2Q969R5 705 aa7.32□□□□□ -1.24
SYNE1-220ENST00000471834 CAMSAP2Q08AD1 1489 aa7.32□□□□□ -1.24
SYNE1-220ENST00000471834 ARHGAP31Q2M1Z3 1444 aa7.32□□□□□ -1.24
SYNE1-220ENST00000471834 KIAA0556O60303 1618 aa7.32□□□□□ -1.24
SYNE1-220ENST00000471834 KANK1Q14678 1352 aa7.31□□□□□ -1.24
SYNE1-220ENST00000471834 BCORL1Q5H9F3 1711 aa7.31□□□□□ -1.24
SYNE1-220ENST00000471834 KDM2BQ8NHM5 1336 aa7.31□□□□□ -1.24
SYNE1-220ENST00000471834 CCDC184Q52MB2 194 aa7.31□□□□□ -1.24
SYNE1-220ENST00000471834 ABCA8O94911 1581 aa7.31□□□□□ -1.24
SYNE1-220ENST00000471834 TRMT2AQ8IZ69 625 aaKnown RBP7.3□□□□□ -1.24
SYNE1-220ENST00000471834 ARAP3Q8WWN8 1544 aa7.3□□□□□ -1.24
SYNE1-220ENST00000471834 IPO9Q96P70 1041 aaKnown RBP7.3□□□□□ -1.24
SYNE1-220ENST00000471834 DUOX2Q9NRD8 1548 aa7.3□□□□□ -1.24
SYNE1-220ENST00000471834 STAC3Q96MF2 364 aa7.3□□□□□ -1.24
SYNE1-220ENST00000471834 NGEFQ8N5V2 710 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 SLC4A1APQ9BWU0 796 aaKnown RBP7.29□□□□□ -1.24
SYNE1-220ENST00000471834 PDS5BQ9NTI5 1447 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 UNC13BO14795 1591 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 PLPPR3Q6T4P5 718 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 CCDC141Q6ZP82 1450 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 VWDEQ8N2E2 1590 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 YEATS2Q9ULM3 1422 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 MPHOSPH9Q99550 1183 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 RNF17Q9BXT8 1623 aaKnown RBP7.29□□□□□ -1.24
SYNE1-220ENST00000471834 BACH2Q9BYV9 841 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 DAXXQ9UER7 740 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-220ENST00000471834 CROCC2H7BZ55 1655 aa7.29□□□□□ -1.24
SYNE1-220ENST00000471834 TCERG1O14776 1098 aaKnown RBP7.28□□□□□ -1.24
SYNE1-220ENST00000471834 BCANQ96GW7 911 aa7.28□□□□□ -1.24
SYNE1-220ENST00000471834 PABPN1Q86U42 306 aaKnown RBP eCLIP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms