RNA–Protein interactions for RNA: ENST00000461981.5

CLK1-207, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 3,173 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-207ENST00000461981 FBXO41Q8TF61 875 aa9.16□□□□□ -0.94
CLK1-207ENST00000461981 FER1L4A9Z1Z3 1794 aa9.15□□□□□ -0.94
CLK1-207ENST00000461981 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.15□□□□□ -0.94
CLK1-207ENST00000461981 NEUROD1Q13562 356 aa9.15□□□□□ -0.94
CLK1-207ENST00000461981 C9orf84Q5VXU9 1444 aa9.14□□□□□ -0.95
CLK1-207ENST00000461981 FMN1Q68DA7 1419 aa9.14□□□□□ -0.95
CLK1-207ENST00000461981 PLCH2O75038 1416 aa9.14□□□□□ -0.95
CLK1-207ENST00000461981 KIF14Q15058 1648 aa9.13□□□□□ -0.95
CLK1-207ENST00000461981 RIMS1Q86UR5 1692 aaKnown RBP9.13□□□□□ -0.95
CLK1-207ENST00000461981 PTPRTO14522 1441 aa9.13□□□□□ -0.95
CLK1-207ENST00000461981 LMTK3Q96Q04 1460 aa9.13□□□□□ -0.95
CLK1-207ENST00000461981 CCDC18Q5T9S5 1454 aa9.13□□□□□ -0.95
CLK1-207ENST00000461981 CNTLNQ9NXG0 1405 aa9.12□□□□□ -0.95
CLK1-207ENST00000461981 ATP10AO60312 1499 aa9.12□□□□□ -0.95
CLK1-207ENST00000461981 MLH3Q9UHC1 1453 aa9.12□□□□□ -0.95
CLK1-207ENST00000461981 PREX2Q70Z35 1606 aa9.11□□□□□ -0.95
CLK1-207ENST00000461981 ITSN2Q9NZM3 1697 aa9.11□□□□□ -0.95
CLK1-207ENST00000461981 ZNF142P52746 1687 aaPredicted RBP9.1□□□□□ -0.95
CLK1-207ENST00000461981 ZNF518AQ6AHZ1 1483 aa9.1□□□□□ -0.95
CLK1-207ENST00000461981 NPATQ14207 1427 aa9.09□□□□□ -0.95
CLK1-207ENST00000461981 PLEKHH2Q8IVE3 1493 aa9.09□□□□□ -0.95
CLK1-207ENST00000461981 CLIP1P30622 1438 aa9.08□□□□□ -0.96
CLK1-207ENST00000461981 SETD1BQ9UPS6 1966 aaKnown RBP9.07□□□□□ -0.96
CLK1-207ENST00000461981 ILDR1Q86SU0 546 aaPredicted RBP9.07□□□□□ -0.96
CLK1-207ENST00000461981 CSRNP3Q8WYN3 585 aa9.07□□□□□ -0.96
CLK1-207ENST00000461981 TROQ12816 1431 aaPredicted RBP9.07□□□□□ -0.96
CLK1-207ENST00000461981 DIP2CQ9Y2E4 1556 aa9.06□□□□□ -0.96
CLK1-207ENST00000461981 ABCC1P33527 1531 aa9.06□□□□□ -0.96
CLK1-207ENST00000461981 PPP6R1Q9UPN7 881 aa9.05□□□□□ -0.96
CLK1-207ENST00000461981 DMRT2Q9Y5R5 561 aa9.05□□□□□ -0.96
CLK1-207ENST00000461981 PLEKHD1A6NEE1 506 aa9.04□□□□□ -0.96
CLK1-207ENST00000461981 PLA2R1Q13018 1463 aa9.04□□□□□ -0.96
CLK1-207ENST00000461981 CDK11AQ9UQ88 783 aaPredicted RBP9.03□□□□□ -0.96
CLK1-207ENST00000461981 ADGBQ8N7X0 1667 aa9.03□□□□□ -0.96
CLK1-207ENST00000461981 KIAA1107Q9UPP5 1409 aa9.03□□□□□ -0.96
CLK1-207ENST00000461981 FYCO1Q9BQS8 1478 aa9.03□□□□□ -0.96
CLK1-207ENST00000461981 PLXNC1O60486 1568 aa9.02□□□□□ -0.97
CLK1-207ENST00000461981 CASKIN1Q8WXD9 1431 aa9.02□□□□□ -0.97
CLK1-207ENST00000461981 YEATS2Q9ULM3 1422 aa9.02□□□□□ -0.97
CLK1-207ENST00000461981 CDC42BPBQ9Y5S2 1711 aa9.02□□□□□ -0.97
CLK1-207ENST00000461981 SIGLEC1Q9BZZ2 1709 aa9.01□□□□□ -0.97
CLK1-207ENST00000461981 INO80Q9ULG1 1556 aaPredicted RBP9.01□□□□□ -0.97
CLK1-207ENST00000461981 C3P01024 1663 aa9.01□□□□□ -0.97
CLK1-207ENST00000461981 ABCA6Q8N139 1617 aa9□□□□□ -0.97
CLK1-207ENST00000461981 STRCQ7RTU9 1775 aa9□□□□□ -0.97
CLK1-207ENST00000461981 EFCAB2Q5VUJ9 269 aa9□□□□□ -0.97
CLK1-207ENST00000461981 CDC42BPAQ5VT25 1732 aa8.98□□□□□ -0.97
CLK1-207ENST00000461981 UHRF1BP1Q6BDS2 1440 aa8.98□□□□□ -0.97
CLK1-207ENST00000461981 ANP32EQ9BTT0 268 aa8.98□□□□□ -0.97
CLK1-207ENST00000461981 SCAPERQ9BY12 1400 aa8.98□□□□□ -0.97
CLK1-207ENST00000461981 KIDINS220Q9ULH0 1771 aa8.98□□□□□ -0.97
CLK1-207ENST00000461981 ARHGAP35Q9NRY4 1499 aa8.98□□□□□ -0.97
CLK1-207ENST00000461981 RTEL1-TNFRSF6BF6WH68 1400 aa8.98□□□□□ -0.97
CLK1-207ENST00000461981 LRRIQ1Q96JM4 1722 aa8.97□□□□□ -0.97
CLK1-207ENST00000461981 TRAPPC8Q9Y2L5 1435 aa8.97□□□□□ -0.97
CLK1-207ENST00000461981 ZC3H13Q5T200 1668 aaKnown RBP8.97□□□□□ -0.97
CLK1-207ENST00000461981 LTBP4Q8N2S1 1624 aa8.96□□□□□ -0.98
CLK1-207ENST00000461981 SAMD9LQ8IVG5 1584 aa8.95□□□□□ -0.98
CLK1-207ENST00000461981 NCOA1Q15788 1441 aa8.95□□□□□ -0.98
CLK1-207ENST00000461981 ARHGAP5Q13017 1502 aa8.95□□□□□ -0.98
CLK1-207ENST00000461981 MAST1Q9Y2H9 1570 aa8.95□□□□□ -0.98
CLK1-207ENST00000461981 DEPDC5O75140 1603 aa8.95□□□□□ -0.98
CLK1-207ENST00000461981 EIF2AK4Q9P2K8 1649 aaKnown RBP8.94□□□□□ -0.98
CLK1-207ENST00000461981 KDM5AP29375 1690 aaKnown RBP8.94□□□□□ -0.98
CLK1-207ENST00000461981 CPS1P31327 1500 aa8.93□□□□□ -0.98
CLK1-207ENST00000461981 SLC24A1O60721 1099 aa8.93□□□□□ -0.98
CLK1-207ENST00000461981 KCNH8Q96L42 1107 aa8.93□□□□□ -0.98
CLK1-207ENST00000461981 CDK13Q14004 1512 aaKnown RBP8.93□□□□□ -0.98
CLK1-207ENST00000461981 ARHGEF5Q12774 1597 aa8.93□□□□□ -0.98
CLK1-207ENST00000461981 MYO3AQ8NEV4 1616 aa8.93□□□□□ -0.98
CLK1-207ENST00000461981 EHBP1L1Q8N3D4 1523 aa8.93□□□□□ -0.98
CLK1-207ENST00000461981 MAP3K1Q13233 1512 aa8.92□□□□□ -0.98
CLK1-207ENST00000461981 ZEB1P37275 1124 aaPredicted RBP8.92□□□□□ -0.98
CLK1-207ENST00000461981 CERKQ8TCT0 537 aa8.91□□□□□ -0.98
CLK1-207ENST00000461981 TCOF1Q13428 1488 aaKnown RBP8.91□□□□□ -0.98
CLK1-207ENST00000461981 KDM5DQ9BY66 1539 aa8.91□□□□□ -0.98
CLK1-207ENST00000461981 SYNMO15061 1565 aa8.91□□□□□ -0.98
CLK1-207ENST00000461981 POLR1AO95602 1720 aaPredicted RBP8.91□□□□□ -0.98
CLK1-207ENST00000461981 ATP7AQ04656 1500 aa8.91□□□□□ -0.98
CLK1-207ENST00000461981 RNF17Q9BXT8 1623 aaKnown RBP8.9□□□□□ -0.98
CLK1-207ENST00000461981 SPATA31D1Q6ZQQ2 1576 aa8.9□□□□□ -0.99
CLK1-207ENST00000461981 PKD2Q13563 968 aa8.89□□□□□ -0.99
CLK1-207ENST00000461981 A2ML1A8K2U0 1454 aa8.89□□□□□ -0.99
CLK1-207ENST00000461981 RSPH4AQ5TD94 716 aa8.88□□□□□ -0.99
CLK1-207ENST00000461981 CEP170BQ9Y4F5 1589 aaPredicted RBP8.88□□□□□ -0.99
CLK1-207ENST00000461981 RAPGEF3O95398 923 aa8.88□□□□□ -0.99
CLK1-207ENST00000461981 CEP162Q5TB80 1403 aa8.88□□□□□ -0.99
CLK1-207ENST00000461981 CAMSAP2Q08AD1 1489 aa8.88□□□□□ -0.99
CLK1-207ENST00000461981 MED14O60244 1454 aa8.87□□□□□ -0.99
CLK1-207ENST00000461981 NLRP1Q9C000 1473 aa8.87□□□□□ -0.99
CLK1-207ENST00000461981 SUPT6HQ7KZ85 1726 aaKnown RBP8.86□□□□□ -0.99
CLK1-207ENST00000461981 A2MP01023 1474 aa8.86□□□□□ -0.99
CLK1-207ENST00000461981 GPATCH8Q9UKJ3 1502 aaKnown RBP8.86□□□□□ -0.99
CLK1-207ENST00000461981 PTPRKQ15262 1439 aa8.86□□□□□ -0.99
CLK1-207ENST00000461981 PZPP20742 1482 aa8.84□□□□□ -0.99
CLK1-207ENST00000461981 CLTCQ00610 1675 aaKnown RBP8.84□□□□□ -0.99
CLK1-207ENST00000461981 ARID4BQ4LE39 1312 aaPredicted RBP8.84□□□□□ -0.99
CLK1-207ENST00000461981 CAMSAP1Q5T5Y3 1602 aa8.83□□□□□ -1
CLK1-207ENST00000461981 TIAM1Q13009 1591 aa8.83□□□□□ -1
CLK1-207ENST00000461981 NCOA2Q15596 1464 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 141.3 ms