RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DENND4BO75064 1496 aaPredicted RBP21.53■■□□□ 1.04
LDLR-202ENST00000455727 PRG4Q92954 1404 aaPredicted RBP21.52■■□□□ 1.03
LDLR-202ENST00000455727 ABCA8O94911 1581 aa21.51■■□□□ 1.03
LDLR-202ENST00000455727 KDM5BQ9UGL1 1544 aa21.49■■□□□ 1.03
LDLR-202ENST00000455727 GPATCH8Q9UKJ3 1502 aaKnown RBP21.48■■□□□ 1.03
LDLR-202ENST00000455727 TRIM52Q96A61 297 aa21.47■■□□□ 1.03
LDLR-202ENST00000455727 MPHOSPH9Q99550 1183 aa21.46■■□□□ 1.03
LDLR-202ENST00000455727 ZNF644Q9H582 1327 aaPredicted RBP21.46■■□□□ 1.03
LDLR-202ENST00000455727 KIF14Q15058 1648 aa21.45■■□□□ 1.02
LDLR-202ENST00000455727 CAMSAP2Q08AD1 1489 aa21.45■■□□□ 1.02
LDLR-202ENST00000455727 CFDP1Q9UEE9 299 aaPredicted RBP21.43■■□□□ 1.02
LDLR-202ENST00000455727 ADGBQ8N7X0 1667 aa21.43■■□□□ 1.02
LDLR-202ENST00000455727 DDX10Q13206 875 aaKnown RBP21.41■■□□□ 1.02
LDLR-202ENST00000455727 CROCC2H7BZ55 1655 aa21.41■■□□□ 1.02
LDLR-202ENST00000455727 ATP10BO94823 1461 aa21.4■■□□□ 1.02
LDLR-202ENST00000455727 ADGRL2O95490 1459 aa21.39■■□□□ 1.02
LDLR-202ENST00000455727 PLEKHD1A6NEE1 506 aa21.39■■□□□ 1.01
LDLR-202ENST00000455727 CDC42BPAQ5VT25 1732 aa21.38■■□□□ 1.01
LDLR-202ENST00000455727 NCOA1Q15788 1441 aa21.37■■□□□ 1.01
LDLR-202ENST00000455727 ABCC10Q5T3U5 1492 aa21.37■■□□□ 1.01
LDLR-202ENST00000455727 ANKRD30BQ9BXX2 1392 aa21.35■■□□□ 1.01
LDLR-202ENST00000455727 CHD1O14646 1710 aa21.35■■□□□ 1.01
LDLR-202ENST00000455727 PTPRGP23470 1445 aa21.33■■□□□ 1
LDLR-202ENST00000455727 RPRD2Q5VT52 1461 aaKnown RBP21.33■■□□□ 1
LDLR-202ENST00000455727 HIRIP3Q9BW71 556 aaPredicted RBP21.32■■□□□ 1
LDLR-202ENST00000455727 SHROOM2Q13796 1616 aa21.31■■□□□ 1
LDLR-202ENST00000455727 SHANK2Q9UPX8 1470 aa21.3■■□□□ 1
LDLR-202ENST00000455727 ANKRD30AQ9BXX3 1397 aa21.3■■□□□ 1
LDLR-202ENST00000455727 PZPP20742 1482 aa21.28■■□□□ 1
LDLR-202ENST00000455727 SLC4A1APQ9BWU0 796 aaKnown RBP21.28■■□□□ 1
LDLR-202ENST00000455727 CCER2I3L3R5 266 aa21.27■■□□□ 1
LDLR-202ENST00000455727 ZNF777Q9ULD5 760 aaPredicted RBP21.27■■□□□ 1
LDLR-202ENST00000455727 L3MBTL2Q969R5 705 aa21.27■□□□□ 0.99
LDLR-202ENST00000455727 FOXD1Q16676 465 aa21.25■□□□□ 0.99
LDLR-202ENST00000455727 TEX14Q8IWB6 1497 aa21.24■□□□□ 0.99
LDLR-202ENST00000455727 ANP32CO43423 234 aa21.24■□□□□ 0.99
LDLR-202ENST00000455727 ARHGEF5Q12774 1597 aa21.23■□□□□ 0.99
LDLR-202ENST00000455727 KCNH8Q96L42 1107 aa21.23■□□□□ 0.99
LDLR-202ENST00000455727 ANKRD50Q9ULJ7 1429 aa21.21■□□□□ 0.99
LDLR-202ENST00000455727 C9orf84Q5VXU9 1444 aa21.21■□□□□ 0.99
LDLR-202ENST00000455727 EIF4G2P78344 907 aaKnown RBP eCLIP21.21■□□□□ 0.99
LDLR-202ENST00000455727 KIAA1107Q9UPP5 1409 aa21.2■□□□□ 0.98
LDLR-202ENST00000455727 HSPA5P11021 654 aaKnown RBP21.2■□□□□ 0.98
LDLR-202ENST00000455727 PREX2Q70Z35 1606 aa21.19■□□□□ 0.98
LDLR-202ENST00000455727 CDC42BPBQ9Y5S2 1711 aa21.18■□□□□ 0.98
LDLR-202ENST00000455727 TSPY4P0CV99 314 aa21.16■□□□□ 0.98
LDLR-202ENST00000455727 TSPY10P0CW01 314 aa21.16■□□□□ 0.98
LDLR-202ENST00000455727 MBD5Q9P267 1494 aa21.16■□□□□ 0.98
LDLR-202ENST00000455727 KDM5DQ9BY66 1539 aa21.15■□□□□ 0.98
LDLR-202ENST00000455727 RSPH4AQ5TD94 716 aa21.15■□□□□ 0.98
LDLR-202ENST00000455727 SAMD9LQ8IVG5 1584 aa21.14■□□□□ 0.97
LDLR-202ENST00000455727 WASHC2AQ641Q2 1341 aa21.13■□□□□ 0.97
LDLR-202ENST00000455727 ABCC2Q92887 1545 aa21.13■□□□□ 0.97
LDLR-202ENST00000455727 NBPF8Q3BBV2 869 aa21.12■□□□□ 0.97
LDLR-202ENST00000455727 CCDC141Q6ZP82 1450 aa21.11■□□□□ 0.97
LDLR-202ENST00000455727 PKD2Q13563 968 aa21.1■□□□□ 0.97
LDLR-202ENST00000455727 POLR1AO95602 1720 aaPredicted RBP21.09■□□□□ 0.97
LDLR-202ENST00000455727 HNRNPMP52272 730 aaKnown RBP eCLIP21.09■□□□□ 0.97
LDLR-202ENST00000455727 SPATA31E1Q6ZUB1 1445 aa21.08■□□□□ 0.97
LDLR-202ENST00000455727 KIF15Q9NS87 1388 aa21.08■□□□□ 0.97
LDLR-202ENST00000455727 ERCC6L2Q5T890 1561 aa21.08■□□□□ 0.97
LDLR-202ENST00000455727 CLASP1Q7Z460 1538 aa21.08■□□□□ 0.96
LDLR-202ENST00000455727 NUP155O75694 1391 aa21.07■□□□□ 0.96
LDLR-202ENST00000455727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.07■□□□□ 0.965e-12■□□□□ 9.5
LDLR-202ENST00000455727 MAST1Q9Y2H9 1570 aa21.07■□□□□ 0.96
LDLR-202ENST00000455727 TTC37Q6PGP7 1564 aa21.06■□□□□ 0.96
LDLR-202ENST00000455727 MYO5CQ9NQX4 1742 aa21.05■□□□□ 0.96
LDLR-202ENST00000455727 CNTLNQ9NXG0 1405 aa21.04■□□□□ 0.96
LDLR-202ENST00000455727 CCDC7Q96M83 1385 aa21.04■□□□□ 0.96
LDLR-202ENST00000455727 UHRF1BP1LA0JNW5 1464 aa21.03■□□□□ 0.96
LDLR-202ENST00000455727 PLEKHH2Q8IVE3 1493 aa21.02■□□□□ 0.96
LDLR-202ENST00000455727 ARHGAP5Q13017 1502 aa21.02■□□□□ 0.96
LDLR-202ENST00000455727 SUPT16HQ9Y5B9 1047 aaKnown RBP21.01■□□□□ 0.95
LDLR-202ENST00000455727 SYCP2Q9BX26 1530 aa21■□□□□ 0.95
LDLR-202ENST00000455727 ARHGEF12Q9NZN5 1544 aa21■□□□□ 0.95
LDLR-202ENST00000455727 UHRF1BP1Q6BDS2 1440 aa21■□□□□ 0.95
LDLR-202ENST00000455727 C11orf95C9JLR9 678 aaPredicted RBP20.99■□□□□ 0.95
LDLR-202ENST00000455727 ZCCHC11Q5TAX3 1644 aaKnown RBP20.98■□□□□ 0.95
LDLR-202ENST00000455727 PLXNC1O60486 1568 aa20.98■□□□□ 0.95
LDLR-202ENST00000455727 UNC13BO14795 1591 aa20.95■□□□□ 0.94
LDLR-202ENST00000455727 FAM135AQ9P2D6 1515 aa20.95■□□□□ 0.94
LDLR-202ENST00000455727 PLCH2O75038 1416 aa20.94■□□□□ 0.94
LDLR-202ENST00000455727 RALGAPBQ86X10 1494 aa20.92■□□□□ 0.94
LDLR-202ENST00000455727 KIF7Q2M1P5 1343 aa20.92■□□□□ 0.94
LDLR-202ENST00000455727 KDM5CP41229 1560 aa20.92■□□□□ 0.94
LDLR-202ENST00000455727 USP47Q96K76 1375 aa20.9■□□□□ 0.94
LDLR-202ENST00000455727 ARID4BQ4LE39 1312 aaPredicted RBP20.9■□□□□ 0.94
LDLR-202ENST00000455727 DUOX2Q9NRD8 1548 aa20.88■□□□□ 0.93
LDLR-202ENST00000455727 PRKRIP1Q9H875 184 aaPredicted RBP20.88■□□□□ 0.93
LDLR-202ENST00000455727 IQGAP3Q86VI3 1631 aa20.88■□□□□ 0.93
LDLR-202ENST00000455727 EFCAB2Q5VUJ9 269 aa20.87■□□□□ 0.93
LDLR-202ENST00000455727 ARAP3Q8WWN8 1544 aa20.87■□□□□ 0.93
LDLR-202ENST00000455727 BCORL1Q5H9F3 1711 aa20.86■□□□□ 0.93
LDLR-202ENST00000455727 ABCC1P33527 1531 aa20.85■□□□□ 0.93
LDLR-202ENST00000455727 ERBINQ96RT1 1412 aa20.85■□□□□ 0.93
LDLR-202ENST00000455727 MAGI2Q86UL8 1455 aa20.84■□□□□ 0.93
LDLR-202ENST00000455727 ZNF326Q5BKZ1 582 aaKnown RBP20.83■□□□□ 0.92
LDLR-202ENST00000455727 CCDC144AA2RUR9 1427 aa20.81■□□□□ 0.92
LDLR-202ENST00000455727 ATP10AO60312 1499 aa20.8■□□□□ 0.92
LDLR-202ENST00000455727 PLA2R1Q13018 1463 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms