RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 ARHGEF12Q9NZN5 1544 aa24.22■■□□□ 1.47
HMGN1-208ENST00000443046 CERKQ8TCT0 537 aa24.21■■□□□ 1.47
HMGN1-208ENST00000443046 ATP10AO60312 1499 aa24.2■■□□□ 1.47
HMGN1-208ENST00000443046 PLPPR3Q6T4P5 718 aa24.2■■□□□ 1.46
HMGN1-208ENST00000443046 MLECQ14165 292 aa24.19■■□□□ 1.46
HMGN1-208ENST00000443046 C9orf84Q5VXU9 1444 aa24.17■■□□□ 1.46
HMGN1-208ENST00000443046 EFCAB2Q5VUJ9 269 aa24.14■■□□□ 1.45
HMGN1-208ENST00000443046 MYO5CQ9NQX4 1742 aa24.14■■□□□ 1.45
HMGN1-208ENST00000443046 PREX1Q8TCU6 1659 aa24.13■■□□□ 1.45
HMGN1-208ENST00000443046 FMN1Q68DA7 1419 aa24.1■■□□□ 1.45
HMGN1-208ENST00000443046 KDM5CP41229 1560 aa24.09■■□□□ 1.45
HMGN1-208ENST00000443046 ZNF518AQ6AHZ1 1483 aa24.08■■□□□ 1.45
HMGN1-208ENST00000443046 CEBPAP49715 358 aaPredicted RBP24.08■■□□□ 1.45
HMGN1-208ENST00000443046 KIF14Q15058 1648 aa24.08■■□□□ 1.45
HMGN1-208ENST00000443046 STRCQ7RTU9 1775 aa24.08■■□□□ 1.44
HMGN1-208ENST00000443046 SETD1BQ9UPS6 1966 aaKnown RBP24.07■■□□□ 1.44
HMGN1-208ENST00000443046 ARHGAP35Q9NRY4 1499 aa24.07■■□□□ 1.44
HMGN1-208ENST00000443046 CDK11AQ9UQ88 783 aaPredicted RBP24.06■■□□□ 1.44
HMGN1-208ENST00000443046 AFAP1Q8N556 730 aa24.05■■□□□ 1.44
HMGN1-208ENST00000443046 TROQ12816 1431 aaPredicted RBP24.04■■□□□ 1.44
HMGN1-208ENST00000443046 REREQ9P2R6 1566 aa24.03■■□□□ 1.44
HMGN1-208ENST00000443046 DMRT2Q9Y5R5 561 aa24.02■■□□□ 1.44
HMGN1-208ENST00000443046 DIP2CQ9Y2E4 1556 aa24.01■■□□□ 1.43
HMGN1-208ENST00000443046 ATP1B4Q9UN42 357 aaPredicted RBP24.01■■□□□ 1.43
HMGN1-208ENST00000443046 ARHGAP5Q13017 1502 aa24■■□□□ 1.43
HMGN1-208ENST00000443046 UHRF1BP1Q6BDS2 1440 aa23.99■■□□□ 1.43
HMGN1-208ENST00000443046 MLH3Q9UHC1 1453 aa23.99■■□□□ 1.43
HMGN1-208ENST00000443046 LRRIQ1Q96JM4 1722 aa23.98■■□□□ 1.43
HMGN1-208ENST00000443046 CDC42BPBQ9Y5S2 1711 aa23.98■■□□□ 1.43
HMGN1-208ENST00000443046 UBTFP17480 764 aaKnown RBP23.97■■□□□ 1.43
HMGN1-208ENST00000443046 ABCA6Q8N139 1617 aa23.95■■□□□ 1.43
HMGN1-208ENST00000443046 AGLP35573 1532 aa23.95■■□□□ 1.43
HMGN1-208ENST00000443046 CLIP1P30622 1438 aa23.95■■□□□ 1.42
HMGN1-208ENST00000443046 C3P01024 1663 aa23.94■■□□□ 1.42
HMGN1-208ENST00000443046 PTPRTO14522 1441 aa23.93■■□□□ 1.42
HMGN1-208ENST00000443046 TRAPPC8Q9Y2L5 1435 aa23.91■■□□□ 1.42
HMGN1-208ENST00000443046 ABCC1P33527 1531 aa23.9■■□□□ 1.42
HMGN1-208ENST00000443046 PREX2Q70Z35 1606 aa23.89■■□□□ 1.42
HMGN1-208ENST00000443046 EHMT2Q96KQ7 1210 aa23.89■■□□□ 1.41
HMGN1-208ENST00000443046 ILDR2Q71H61 639 aa23.87■■□□□ 1.41
HMGN1-208ENST00000443046 MYT1LQ9UL68 1186 aa23.87■■□□□ 1.41
HMGN1-208ENST00000443046 ITSN2Q9NZM3 1697 aa23.86■■□□□ 1.41
HMGN1-208ENST00000443046 KIDINS220Q9ULH0 1771 aa23.86■■□□□ 1.41
HMGN1-208ENST00000443046 LTBP4Q8N2S1 1624 aa23.85■■□□□ 1.41
HMGN1-208ENST00000443046 DISP3Q9P2K9 1392 aa23.85■■□□□ 1.41
HMGN1-208ENST00000443046 CASKIN1Q8WXD9 1431 aa23.83■■□□□ 1.4
HMGN1-208ENST00000443046 CNTLNQ9NXG0 1405 aa23.83■■□□□ 1.4
HMGN1-208ENST00000443046 NCOA1Q15788 1441 aa23.82■■□□□ 1.4
HMGN1-208ENST00000443046 CCDC18Q5T9S5 1454 aa23.81■■□□□ 1.4
HMGN1-208ENST00000443046 CDC42BPAQ5VT25 1732 aa23.81■■□□□ 1.4
HMGN1-208ENST00000443046 ESF1Q9H501 851 aaKnown RBP23.8■■□□□ 1.4
HMGN1-208ENST00000443046 IQSEC2Q5JU85 1478 aa23.8■■□□□ 1.4
HMGN1-208ENST00000443046 SOCS7O14512 581 aa23.79■■□□□ 1.4
HMGN1-208ENST00000443046 MROH2AA6NES4 1674 aa23.76■■□□□ 1.39
HMGN1-208ENST00000443046 NPATQ14207 1427 aa23.76■■□□□ 1.39
HMGN1-208ENST00000443046 SAMD9LQ8IVG5 1584 aa23.76■■□□□ 1.39
HMGN1-208ENST00000443046 CHIC1Q5VXU3 224 aa23.72■■□□□ 1.39
HMGN1-208ENST00000443046 ZMYM3Q14202 1370 aa23.72■■□□□ 1.39
HMGN1-208ENST00000443046 CAMSAP1Q5T5Y3 1602 aa23.71■■□□□ 1.39
HMGN1-208ENST00000443046 SPATA31D1Q6ZQQ2 1576 aa23.71■■□□□ 1.39
HMGN1-208ENST00000443046 GPATCH8Q9UKJ3 1502 aaKnown RBP23.69■■□□□ 1.38
HMGN1-208ENST00000443046 FYCO1Q9BQS8 1478 aa23.68■■□□□ 1.38
HMGN1-208ENST00000443046 SYCP2Q9BX26 1530 aa23.68■■□□□ 1.38
HMGN1-208ENST00000443046 SPAG9O60271 1321 aaKnown RBP23.67■■□□□ 1.38
HMGN1-208ENST00000443046 PLXNC1O60486 1568 aa23.66■■□□□ 1.38
HMGN1-208ENST00000443046 SUPT6HQ7KZ85 1726 aaKnown RBP23.66■■□□□ 1.38
HMGN1-208ENST00000443046 KIAA1107Q9UPP5 1409 aa23.66■■□□□ 1.38
HMGN1-208ENST00000443046 HNRNPMP52272 730 aaKnown RBP eCLIP23.65■■□□□ 1.38
HMGN1-208ENST00000443046 ZNF777Q9ULD5 760 aaPredicted RBP23.65■■□□□ 1.38
HMGN1-208ENST00000443046 ATP7AQ04656 1500 aa23.64■■□□□ 1.37
HMGN1-208ENST00000443046 ZNF142P52746 1687 aaPredicted RBP23.64■■□□□ 1.37
HMGN1-208ENST00000443046 NCKAP5LQ9HCH0 1330 aa23.63■■□□□ 1.37
HMGN1-208ENST00000443046 INO80Q9ULG1 1556 aaPredicted RBP23.63■■□□□ 1.37
HMGN1-208ENST00000443046 PLA2R1Q13018 1463 aa23.62■■□□□ 1.37
HMGN1-208ENST00000443046 CLTCQ00610 1675 aaKnown RBP23.62■■□□□ 1.37
HMGN1-208ENST00000443046 PTPRKQ15262 1439 aa23.61■■□□□ 1.37
HMGN1-208ENST00000443046 MYO3AQ8NEV4 1616 aa23.61■■□□□ 1.37
HMGN1-208ENST00000443046 A2MP01023 1474 aa23.61■■□□□ 1.37
HMGN1-208ENST00000443046 TCOF1Q13428 1488 aaKnown RBP23.61■■□□□ 1.37
HMGN1-208ENST00000443046 ZNF335Q9H4Z2 1342 aaPredicted RBP23.6■■□□□ 1.37
HMGN1-208ENST00000443046 PKD2Q13563 968 aa23.6■■□□□ 1.37
HMGN1-208ENST00000443046 PLEKHH2Q8IVE3 1493 aa23.6■■□□□ 1.37
HMGN1-208ENST00000443046 CEP170BQ9Y4F5 1589 aaPredicted RBP23.57■■□□□ 1.36
HMGN1-208ENST00000443046 CFDP1Q9UEE9 299 aaPredicted RBP23.56■■□□□ 1.36
HMGN1-208ENST00000443046 PPP6R1Q9UPN7 881 aa23.56■■□□□ 1.36
HMGN1-208ENST00000443046 CCNB3Q8WWL7 1395 aa23.52■■□□□ 1.36
HMGN1-208ENST00000443046 ADGBQ8N7X0 1667 aa23.52■■□□□ 1.36
HMGN1-208ENST00000443046 UBAP1LF5GYI3 381 aa23.52■■□□□ 1.36
HMGN1-208ENST00000443046 GGT6Q6P531 493 aa23.52■■□□□ 1.36
HMGN1-208ENST00000443046 MBD5Q9P267 1494 aa23.49■■□□□ 1.35
HMGN1-208ENST00000443046 A2ML1A8K2U0 1454 aa23.48■■□□□ 1.35
HMGN1-208ENST00000443046 DNMT1P26358 1616 aaKnown RBP23.48■■□□□ 1.35
HMGN1-208ENST00000443046 RTEL1-TNFRSF6BF6WH68 1400 aa23.46■■□□□ 1.35
HMGN1-208ENST00000443046 ZNF644Q9H582 1327 aaPredicted RBP23.46■■□□□ 1.35
HMGN1-208ENST00000443046 TIAM1Q13009 1591 aa23.44■■□□□ 1.34
HMGN1-208ENST00000443046 MTUS2Q5JR59 1369 aa23.44■■□□□ 1.34
HMGN1-208ENST00000443046 DHX29Q7Z478 1369 aaKnown RBP23.43■■□□□ 1.34
HMGN1-208ENST00000443046 NEURL4Q96JN8 1562 aa23.4■■□□□ 1.34
HMGN1-208ENST00000443046 POLR1AO95602 1720 aaPredicted RBP23.38■■□□□ 1.33
HMGN1-208ENST00000443046 CEP162Q5TB80 1403 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms