RNA–Protein interactions for RNA: ENST00000439724.7

SMAD3-202, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,530 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-202ENST00000439724 CFDP1Q9UEE9 299 aaPredicted RBP17.19■□□□□ 0.34
SMAD3-202ENST00000439724 ADGBQ8N7X0 1667 aa17.18■□□□□ 0.34
SMAD3-202ENST00000439724 UHRF1BP1LA0JNW5 1464 aa17.18■□□□□ 0.34
SMAD3-202ENST00000439724 ZNF644Q9H582 1327 aaPredicted RBP17.17■□□□□ 0.34
SMAD3-202ENST00000439724 ACIN1Q9UKV3 1341 aaKnown RBP17.17■□□□□ 0.34
SMAD3-202ENST00000439724 RRP7BPQ9NSQ0 103 aa17.16■□□□□ 0.34
SMAD3-202ENST00000439724 CHIC2Q9UKJ5 165 aa17.16■□□□□ 0.34
SMAD3-202ENST00000439724 KDM6BO15054 1643 aa17.16■□□□□ 0.34
SMAD3-202ENST00000439724 DIEXFQ68CQ4 756 aaKnown RBP17.16■□□□□ 0.34
SMAD3-202ENST00000439724 TIMELESSQ9UNS1 1208 aa17.16■□□□□ 0.34
SMAD3-202ENST00000439724 ADGRL2O95490 1459 aa17.15■□□□□ 0.34
SMAD3-202ENST00000439724 PREX2Q70Z35 1606 aa17.14■□□□□ 0.33
SMAD3-202ENST00000439724 SHANK2Q9UPX8 1470 aa17.12■□□□□ 0.33
SMAD3-202ENST00000439724 ZCCHC11Q5TAX3 1644 aaKnown RBP17.11■□□□□ 0.33
SMAD3-202ENST00000439724 CDC42BPBQ9Y5S2 1711 aa17.11■□□□□ 0.33
SMAD3-202ENST00000439724 KDM5BQ9UGL1 1544 aa17.1■□□□□ 0.33
SMAD3-202ENST00000439724 ARHGEF5Q12774 1597 aa17.1■□□□□ 0.33
SMAD3-202ENST00000439724 SIN3AQ96ST3 1273 aa17.1■□□□□ 0.33
SMAD3-202ENST00000439724 NCOA1Q15788 1441 aa17.09■□□□□ 0.33
SMAD3-202ENST00000439724 DENND4BO75064 1496 aaPredicted RBP17.08■□□□□ 0.33
SMAD3-202ENST00000439724 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.08■□□□□ 0.32
SMAD3-202ENST00000439724 TTC37Q6PGP7 1564 aa17.08■□□□□ 0.32
SMAD3-202ENST00000439724 SAMD9LQ8IVG5 1584 aa17.07■□□□□ 0.32
SMAD3-202ENST00000439724 ZNF777Q9ULD5 760 aaPredicted RBP17.06■□□□□ 0.32
SMAD3-202ENST00000439724 MYO5CQ9NQX4 1742 aa17.06■□□□□ 0.32
SMAD3-202ENST00000439724 NEUROD1Q13562 356 aa17.05■□□□□ 0.32
SMAD3-202ENST00000439724 ANKRD30AQ9BXX3 1397 aa17.04■□□□□ 0.32
SMAD3-202ENST00000439724 MBD5Q9P267 1494 aa17.03■□□□□ 0.32
SMAD3-202ENST00000439724 C9orf84Q5VXU9 1444 aa17.03■□□□□ 0.32
SMAD3-202ENST00000439724 TRIM52Q96A61 297 aa17.02■□□□□ 0.32
SMAD3-202ENST00000439724 MPHOSPH9Q99550 1183 aa17.01■□□□□ 0.31
SMAD3-202ENST00000439724 CCDC141Q6ZP82 1450 aa17.01■□□□□ 0.31
SMAD3-202ENST00000439724 TONSLQ96HA7 1378 aa17■□□□□ 0.31
SMAD3-202ENST00000439724 ARHGAP5Q13017 1502 aa17■□□□□ 0.31
SMAD3-202ENST00000439724 PLEKHH2Q8IVE3 1493 aa16.99■□□□□ 0.31
SMAD3-202ENST00000439724 PPP1R15AO75807 674 aaPredicted RBP16.99■□□□□ 0.31
SMAD3-202ENST00000439724 MAST1Q9Y2H9 1570 aa16.99■□□□□ 0.31
SMAD3-202ENST00000439724 RSPH4AQ5TD94 716 aa16.98■□□□□ 0.31
SMAD3-202ENST00000439724 PZPP20742 1482 aa16.97■□□□□ 0.31
SMAD3-202ENST00000439724 ANKRD50Q9ULJ7 1429 aa16.97■□□□□ 0.31
SMAD3-202ENST00000439724 KIAA1107Q9UPP5 1409 aa16.97■□□□□ 0.31
SMAD3-202ENST00000439724 SYCP2Q9BX26 1530 aa16.96■□□□□ 0.31
SMAD3-202ENST00000439724 PLCH2O75038 1416 aa16.96■□□□□ 0.31
SMAD3-202ENST00000439724 OSCARQ8IYS5 282 aa16.96■□□□□ 0.3
SMAD3-202ENST00000439724 ARAP3Q8WWN8 1544 aa16.95■□□□□ 0.3
SMAD3-202ENST00000439724 TSPY4P0CV99 314 aa16.95■□□□□ 0.3
SMAD3-202ENST00000439724 TSPY10P0CW01 314 aa16.95■□□□□ 0.3
SMAD3-202ENST00000439724 KDM5DQ9BY66 1539 aa16.94■□□□□ 0.3
SMAD3-202ENST00000439724 ANKRD30BQ9BXX2 1392 aa16.93■□□□□ 0.3
SMAD3-202ENST00000439724 HNRNPMP52272 730 aaKnown RBP eCLIP16.93■□□□□ 0.32e-6■■□□□ 12.5
SMAD3-202ENST00000439724 WDR7Q9Y4E6 1490 aa16.93■□□□□ 0.3
SMAD3-202ENST00000439724 KIF15Q9NS87 1388 aa16.92■□□□□ 0.3
SMAD3-202ENST00000439724 PLXNC1O60486 1568 aa16.91■□□□□ 0.3
SMAD3-202ENST00000439724 RPRD2Q5VT52 1461 aaKnown RBP16.9■□□□□ 0.3
SMAD3-202ENST00000439724 ABCC1P33527 1531 aa16.9■□□□□ 0.3
SMAD3-202ENST00000439724 KCNH8Q96L42 1107 aa16.9■□□□□ 0.3
SMAD3-202ENST00000439724 SLC4A1APQ9BWU0 796 aaKnown RBP16.9■□□□□ 0.3
SMAD3-202ENST00000439724 ABCA9Q8IUA7 1624 aa16.89■□□□□ 0.29
SMAD3-202ENST00000439724 ARHGEF12Q9NZN5 1544 aa16.87■□□□□ 0.29
SMAD3-202ENST00000439724 EFCAB2Q5VUJ9 269 aa16.86■□□□□ 0.29
SMAD3-202ENST00000439724 FOXD1Q16676 465 aa16.85■□□□□ 0.29
SMAD3-202ENST00000439724 TEX14Q8IWB6 1497 aa16.85■□□□□ 0.29
SMAD3-202ENST00000439724 UNC13BO14795 1591 aa16.84■□□□□ 0.29
SMAD3-202ENST00000439724 MIER1Q8N108 512 aa16.83■□□□□ 0.28
SMAD3-202ENST00000439724 ASXL2Q76L83 1435 aa16.82■□□□□ 0.28
SMAD3-202ENST00000439724 NUP155O75694 1391 aa16.82■□□□□ 0.28
SMAD3-202ENST00000439724 DUOX2Q9NRD8 1548 aa16.81■□□□□ 0.28
SMAD3-202ENST00000439724 PKD2Q13563 968 aa16.79■□□□□ 0.28
SMAD3-202ENST00000439724 FAM135AQ9P2D6 1515 aa16.78■□□□□ 0.28
SMAD3-202ENST00000439724 L3MBTL2Q969R5 705 aa16.78■□□□□ 0.28
SMAD3-202ENST00000439724 ERBINQ96RT1 1412 aa16.78■□□□□ 0.28
SMAD3-202ENST00000439724 TRAPPC8Q9Y2L5 1435 aa16.78■□□□□ 0.28
SMAD3-202ENST00000439724 RTEL1-TNFRSF6BF6WH68 1400 aa16.77■□□□□ 0.28
SMAD3-202ENST00000439724 IQGAP3Q86VI3 1631 aa16.77■□□□□ 0.27
SMAD3-202ENST00000439724 FANCAO15360 1455 aa16.77■□□□□ 0.27
SMAD3-202ENST00000439724 MAGI2Q86UL8 1455 aa16.77■□□□□ 0.27
SMAD3-202ENST00000439724 ZFYVE16Q7Z3T8 1539 aa16.76■□□□□ 0.27
SMAD3-202ENST00000439724 INO80Q9ULG1 1556 aaPredicted RBP16.74■□□□□ 0.27
SMAD3-202ENST00000439724 NPM1P06748 294 aaKnown RBP eCLIP16.73■□□□□ 0.27
SMAD3-202ENST00000439724 CFAP74Q9C0B2 1584 aa16.71■□□□□ 0.27
SMAD3-202ENST00000439724 SPAG9O60271 1321 aaKnown RBP16.7■□□□□ 0.26
SMAD3-202ENST00000439724 ADGRL1O94910 1474 aa16.7■□□□□ 0.26
SMAD3-202ENST00000439724 ATP7AQ04656 1500 aa16.7■□□□□ 0.26
SMAD3-202ENST00000439724 CENPBP07199 599 aaPredicted RBP16.67■□□□□ 0.26
SMAD3-202ENST00000439724 DEPDC5O75140 1603 aa16.67■□□□□ 0.26
SMAD3-202ENST00000439724 SCAPERQ9BY12 1400 aa16.67■□□□□ 0.26
SMAD3-202ENST00000439724 NBPF8Q3BBV2 869 aa16.66■□□□□ 0.26
SMAD3-202ENST00000439724 HIRIP3Q9BW71 556 aaPredicted RBP16.65■□□□□ 0.26
SMAD3-202ENST00000439724 UHRF1BP1Q6BDS2 1440 aa16.65■□□□□ 0.26
SMAD3-202ENST00000439724 EIF2AK4Q9P2K8 1649 aaKnown RBP16.65■□□□□ 0.26
SMAD3-202ENST00000439724 EIF4G2P78344 907 aaKnown RBP eCLIP16.65■□□□□ 0.26
SMAD3-202ENST00000439724 AFAP1Q8N556 730 aa16.65■□□□□ 0.26
SMAD3-202ENST00000439724 HSPA5P11021 654 aaKnown RBP16.64■□□□□ 0.25
SMAD3-202ENST00000439724 DDX10Q13206 875 aaKnown RBP16.64■□□□□ 0.25
SMAD3-202ENST00000439724 ATP10AO60312 1499 aa16.64■□□□□ 0.25
SMAD3-202ENST00000439724 CD109Q6YHK3 1445 aa16.63■□□□□ 0.25
SMAD3-202ENST00000439724 ZNF518AQ6AHZ1 1483 aa16.62■□□□□ 0.25
SMAD3-202ENST00000439724 PLA2R1Q13018 1463 aa16.61■□□□□ 0.25
SMAD3-202ENST00000439724 KIDINS220Q9ULH0 1771 aa16.61■□□□□ 0.25
SMAD3-202ENST00000439724 KDM5CP41229 1560 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms