RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 DEKP35659 375 aaKnown RBP18.19■□□□□ 0.5
PTPN13-203ENST00000427191 GPATCH3Q96I76 525 aa18.18■□□□□ 0.5
PTPN13-203ENST00000427191 A0A0U1RQG5 324 aaPredicted RBP18.18■□□□□ 0.5
PTPN13-203ENST00000427191 CHMP4CQ96CF2 233 aa18.17■□□□□ 0.5
PTPN13-203ENST00000427191 CFDP1Q9UEE9 299 aaPredicted RBP18.16■□□□□ 0.5
PTPN13-203ENST00000427191 RB1CC1Q8TDY2 1594 aa18.15■□□□□ 0.5
PTPN13-203ENST00000427191 KIF3AQ9Y496 699 aa18.15■□□□□ 0.5
PTPN13-203ENST00000427191 KIF27Q86VH2 1401 aa18.14■□□□□ 0.5
PTPN13-203ENST00000427191 SENP3-EIF4A1A0A087X0R7 540 aa18.14■□□□□ 0.49
PTPN13-203ENST00000427191 TCERG1O14776 1098 aaKnown RBP18.13■□□□□ 0.49
PTPN13-203ENST00000427191 RWDD1Q9H446 243 aaPredicted RBP18.13■□□□□ 0.49
PTPN13-203ENST00000427191 NEUROD2Q15784 382 aa18.12■□□□□ 0.49
PTPN13-203ENST00000427191 KTN1Q86UP2 1357 aaKnown RBP18.12■□□□□ 0.49
PTPN13-203ENST00000427191 GOLGA6L3A6NEY3 463 aa18.11■□□□□ 0.49
PTPN13-203ENST00000427191 RTF1Q92541 710 aaKnown RBP18.11■□□□□ 0.49
PTPN13-203ENST00000427191 RGL3Q3MIN7 710 aa18.11■□□□□ 0.49
PTPN13-203ENST00000427191 TPM3P06753 285 aa18.1■□□□□ 0.49
PTPN13-203ENST00000427191 U2SURPO15042 1029 aaKnown RBP18.1■□□□□ 0.49
PTPN13-203ENST00000427191 PMFBP1Q8TBY8 1022 aa18.1■□□□□ 0.49
PTPN13-203ENST00000427191 GPS2Q13227 327 aa18.09■□□□□ 0.49
PTPN13-203ENST00000427191 CEP89Q96ST8 783 aa18.08■□□□□ 0.49
PTPN13-203ENST00000427191 EIF3AQ14152 1382 aaKnown RBP18.08■□□□□ 0.48
PTPN13-203ENST00000427191 CCDC70Q6NSX1 233 aa18.08■□□□□ 0.48
PTPN13-203ENST00000427191 TNIKQ9UKE5 1360 aa18.06■□□□□ 0.48
PTPN13-203ENST00000427191 RSPH6AQ9H0K4 717 aa18.06■□□□□ 0.48
PTPN13-203ENST00000427191 PHLDB1Q86UU1 1377 aa18.06■□□□□ 0.48
PTPN13-203ENST00000427191 DDX11L8A8MPP1 907 aa18.05■□□□□ 0.48
PTPN13-203ENST00000427191 HMMRO75330 724 aa18.05■□□□□ 0.48
PTPN13-203ENST00000427191 TAOK2Q9UL54 1235 aa18.05■□□□□ 0.48
PTPN13-203ENST00000427191 TMX4Q9H1E5 349 aaPredicted RBP18.04■□□□□ 0.48
PTPN13-203ENST00000427191 B4GALNT3Q6L9W6 998 aa18.03■□□□□ 0.48
PTPN13-203ENST00000427191 RALBP1Q15311 655 aa18.02■□□□□ 0.48
PTPN13-203ENST00000427191 CALRP27797 417 aaKnown RBP18.02■□□□□ 0.47
PTPN13-203ENST00000427191 CCNB3Q8WWL7 1395 aa18.02■□□□□ 0.47
PTPN13-203ENST00000427191 ATP6V1DQ9Y5K8 247 aa18.01■□□□□ 0.47
PTPN13-203ENST00000427191 MORC1Q86VD1 984 aa18.01■□□□□ 0.47
PTPN13-203ENST00000427191 TSR1Q2NL82 804 aaKnown RBP18.01■□□□□ 0.47
PTPN13-203ENST00000427191 CC2D1BQ5T0F9 858 aaKnown RBP18.01■□□□□ 0.47
PTPN13-203ENST00000427191 ISY1Q9ULR0 285 aaKnown RBP18.01■□□□□ 0.47
PTPN13-203ENST00000427191 ST18O60284 1047 aa18■□□□□ 0.47
PTPN13-203ENST00000427191 SPAG9O60271 1321 aaKnown RBP18■□□□□ 0.47
PTPN13-203ENST00000427191 LMOD2Q6P5Q4 547 aa17.99■□□□□ 0.47
PTPN13-203ENST00000427191 TPM1P09493 284 aa17.98■□□□□ 0.47
PTPN13-203ENST00000427191 SKOR2Q2VWA4 1001 aaPredicted RBP17.98■□□□□ 0.47
PTPN13-203ENST00000427191 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
PTPN13-203ENST00000427191 RBM19Q9Y4C8 960 aaKnown RBP17.97■□□□□ 0.47
PTPN13-203ENST00000427191 HDGFL2Q7Z4V5 671 aaPredicted RBP17.97■□□□□ 0.47
PTPN13-203ENST00000427191 TPM2P07951 284 aa17.97■□□□□ 0.47
PTPN13-203ENST00000427191 AMER1Q5JTC6 1135 aaPredicted RBP17.97■□□□□ 0.47
PTPN13-203ENST00000427191 HSP90AA2PQ14568 343 aaPredicted RBP17.96■□□□□ 0.47
PTPN13-203ENST00000427191 PRM3Q9NNZ6 103 aa17.96■□□□□ 0.47
PTPN13-203ENST00000427191 KIF16BQ96L93 1317 aa17.96■□□□□ 0.47
PTPN13-203ENST00000427191 ARHGAP35Q9NRY4 1499 aa17.95■□□□□ 0.46
PTPN13-203ENST00000427191 RCAN3Q9UKA8 241 aa17.94■□□□□ 0.46
PTPN13-203ENST00000427191 ROCK2O75116 1388 aaKnown RBP17.94■□□□□ 0.46
PTPN13-203ENST00000427191 NCBP3Q53F19 620 aaKnown RBP17.94■□□□□ 0.46
PTPN13-203ENST00000427191 RASSF8Q8NHQ8 419 aa17.94■□□□□ 0.46
PTPN13-203ENST00000427191 IPO9Q96P70 1041 aaKnown RBP17.93■□□□□ 0.46
PTPN13-203ENST00000427191 HSP90B1P14625 803 aaKnown RBP17.93■□□□□ 0.46
PTPN13-203ENST00000427191 LMOD3Q0VAK6 560 aa17.93■□□□□ 0.46
PTPN13-203ENST00000427191 STK31Q9BXU1 1019 aa17.93■□□□□ 0.46
PTPN13-203ENST00000427191 BAZ1BQ9UIG0 1483 aaKnown RBP17.92■□□□□ 0.46
PTPN13-203ENST00000427191 TEX35Q5T0J7 233 aa17.92■□□□□ 0.46
PTPN13-203ENST00000427191 SRPK2P78362 688 aaKnown RBP17.92■□□□□ 0.46
PTPN13-203ENST00000427191 ITPRIPQ8IWB1 547 aa17.91■□□□□ 0.46
PTPN13-203ENST00000427191 MYO15BQ96JP2 1530 aa17.91■□□□□ 0.46
PTPN13-203ENST00000427191 PDE3BQ13370 1112 aa17.9■□□□□ 0.46
PTPN13-203ENST00000427191 SPRYD3Q8NCJ5 442 aa17.9■□□□□ 0.46
PTPN13-203ENST00000427191 GORABQ5T7V8 394 aa17.9■□□□□ 0.46
PTPN13-203ENST00000427191 LRRFIP1Q32MZ4 808 aaKnown RBP17.89■□□□□ 0.45
PTPN13-203ENST00000427191 SETD5Q9C0A6 1442 aa17.88■□□□□ 0.45
PTPN13-203ENST00000427191 GOLGA6L19H0YKK7 550 aa17.88■□□□□ 0.45
PTPN13-203ENST00000427191 GZF1Q9H116 711 aaPredicted RBP17.87■□□□□ 0.45
PTPN13-203ENST00000427191 NOM1Q5C9Z4 860 aaKnown RBP17.87■□□□□ 0.45
PTPN13-203ENST00000427191 CDR1P51861 262 aa17.87■□□□□ 0.45
PTPN13-203ENST00000427191 DCAF11Q8TEB1 546 aa17.87■□□□□ 0.45
PTPN13-203ENST00000427191 NACADO15069 1562 aa17.86■□□□□ 0.45
PTPN13-203ENST00000427191 IPO7O95373 1038 aaKnown RBP17.85■□□□□ 0.45
PTPN13-203ENST00000427191 TPD52L1Q16890 204 aaPredicted RBP17.85■□□□□ 0.45
PTPN13-203ENST00000427191 SLKQ9H2G2 1235 aaPredicted RBP17.85■□□□□ 0.45
PTPN13-203ENST00000427191 HOOK1Q9UJC3 728 aaKnown RBP17.85■□□□□ 0.45
PTPN13-203ENST00000427191 ANKRD20A12PQ8NF67 263 aa17.84■□□□□ 0.45
PTPN13-203ENST00000427191 TRIM6-TRIM34B2RNG4 842 aa17.83■□□□□ 0.45
PTPN13-203ENST00000427191 SF3A1Q15459 793 aaKnown RBP17.83■□□□□ 0.45
PTPN13-203ENST00000427191 RRP12Q5JTH9 1297 aaKnown RBP17.82■□□□□ 0.44
PTPN13-203ENST00000427191 ACBD3Q9H3P7 528 aa17.82■□□□□ 0.44
PTPN13-203ENST00000427191 TAF7LQ5H9L4 462 aa17.81■□□□□ 0.44
PTPN13-203ENST00000427191 MTERF4Q7Z6M4 381 aaKnown RBP17.8■□□□□ 0.44
PTPN13-203ENST00000427191 MLECQ14165 292 aa17.79■□□□□ 0.44
PTPN13-203ENST00000427191 H3BQV1 296 aa17.79■□□□□ 0.44
PTPN13-203ENST00000427191 IFFO2Q5TF58 517 aa17.79■□□□□ 0.44
PTPN13-203ENST00000427191 MFAP1P55081 439 aaKnown RBP17.79■□□□□ 0.44
PTPN13-203ENST00000427191 BECN2A8MW95 431 aa17.78■□□□□ 0.44
PTPN13-203ENST00000427191 TERF2IPQ9NYB0 399 aa17.78■□□□□ 0.44
PTPN13-203ENST00000427191 SMC4Q9NTJ3 1288 aa17.78■□□□□ 0.44
PTPN13-203ENST00000427191 CCDC47Q96A33 483 aaKnown RBP17.78■□□□□ 0.44
PTPN13-203ENST00000427191 AK7Q96M32 723 aa17.77■□□□□ 0.44
PTPN13-203ENST00000427191 U2AF1L5P0DN76 240 aaPredicted RBP17.77■□□□□ 0.43
PTPN13-203ENST00000427191 U2AF1Q01081 240 aaKnown RBP eCLIP17.77■□□□□ 0.43
PTPN13-203ENST00000427191 CENPJQ9HC77 1338 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms