RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 MAP3K1Q13233 1512 aa24.61■■□□□ 1.53
USP48-204ENST00000400301 HFM1A2PYH4 1435 aa24.61■■□□□ 1.53
USP48-204ENST00000400301 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.61■■□□□ 1.53
USP48-204ENST00000400301 WDR97A6NE52 1622 aa24.6■■□□□ 1.53
USP48-204ENST00000400301 NBR1Q14596 966 aa24.59■■□□□ 1.53
USP48-204ENST00000400301 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.59■■□□□ 1.53
USP48-204ENST00000400301 CDCA8Q53HL2 280 aa24.59■■□□□ 1.53
USP48-204ENST00000400301 ROCK2O75116 1388 aaKnown RBP24.56■■□□□ 1.52
USP48-204ENST00000400301 TMF1P82094 1093 aa24.56■■□□□ 1.52
USP48-204ENST00000400301 DNAJC5BQ9UF47 199 aa24.56■■□□□ 1.52
USP48-204ENST00000400301 GRIN2BQ13224 1484 aa24.55■■□□□ 1.52
USP48-204ENST00000400301 ERICH6BQ5W0A0 696 aa24.55■■□□□ 1.52
USP48-204ENST00000400301 WASHC2AQ641Q2 1341 aa24.54■■□□□ 1.52
USP48-204ENST00000400301 NEFMP07197 916 aa24.54■■□□□ 1.52
USP48-204ENST00000400301 STAG3Q9UJ98 1225 aa24.52■■□□□ 1.52
USP48-204ENST00000400301 EHBP1L1Q8N3D4 1523 aa24.51■■□□□ 1.51
USP48-204ENST00000400301 NAIPQ13075 1403 aa24.5■■□□□ 1.51
USP48-204ENST00000400301 ST20-MTHFSA0A0A6YYL1 179 aa24.5■■□□□ 1.51
USP48-204ENST00000400301 SENP3Q9H4L4 574 aaPredicted RBP24.49■■□□□ 1.51
USP48-204ENST00000400301 CCDC7Q96M83 1385 aa24.48■■□□□ 1.51
USP48-204ENST00000400301 RSPH4AQ5TD94 716 aa24.48■■□□□ 1.51
USP48-204ENST00000400301 USP47Q96K76 1375 aa24.48■■□□□ 1.51
USP48-204ENST00000400301 EFCAB2Q5VUJ9 269 aa24.47■■□□□ 1.51
USP48-204ENST00000400301 RALBP1Q15311 655 aa24.47■■□□□ 1.51
USP48-204ENST00000400301 KTN1Q86UP2 1357 aaKnown RBP24.46■■□□□ 1.51
USP48-204ENST00000400301 KIF7Q2M1P5 1343 aa24.45■■□□□ 1.5
USP48-204ENST00000400301 PRDM2Q13029 1718 aa24.44■■□□□ 1.5
USP48-204ENST00000400301 NUDCQ9Y266 331 aa24.44■■□□□ 1.5
USP48-204ENST00000400301 PTPRGP23470 1445 aa24.43■■□□□ 1.5
USP48-204ENST00000400301 MIA2Q96PC5 1412 aa24.42■■□□□ 1.5
USP48-204ENST00000400301 BCL11AQ9H165 835 aa24.42■■□□□ 1.5
USP48-204ENST00000400301 CUL7Q14999 1698 aa24.42■■□□□ 1.5
USP48-204ENST00000400301 CNTLNQ9NXG0 1405 aa24.4■■□□□ 1.5
USP48-204ENST00000400301 URB2Q14146 1524 aaKnown RBP24.4■■□□□ 1.5
USP48-204ENST00000400301 ZBED9Q6R2W3 1325 aa24.39■■□□□ 1.5
USP48-204ENST00000400301 MRC2Q9UBG0 1479 aa24.39■■□□□ 1.49
USP48-204ENST00000400301 NBPF8Q3BBV2 869 aa24.39■■□□□ 1.49
USP48-204ENST00000400301 LAMC3Q9Y6N6 1575 aa24.38■■□□□ 1.49
USP48-204ENST00000400301 SUPT6HQ7KZ85 1726 aaKnown RBP24.38■■□□□ 1.49
USP48-204ENST00000400301 EPRSP07814 1512 aaKnown RBP24.36■■□□□ 1.49
USP48-204ENST00000400301 CDK13Q14004 1512 aaKnown RBP24.36■■□□□ 1.49
USP48-204ENST00000400301 NLRP13Q86W25 1043 aa24.36■■□□□ 1.49
USP48-204ENST00000400301 ANKRD50Q9ULJ7 1429 aa24.36■■□□□ 1.49
USP48-204ENST00000400301 KANK1Q14678 1352 aa24.35■■□□□ 1.49
USP48-204ENST00000400301 MAPKBP1O60336 1514 aa24.35■■□□□ 1.49
USP48-204ENST00000400301 CCDC144AA2RUR9 1427 aa24.35■■□□□ 1.49
USP48-204ENST00000400301 RCAN3Q9UKA8 241 aa24.34■■□□□ 1.49
USP48-204ENST00000400301 HECW1Q76N89 1606 aa24.34■■□□□ 1.49
USP48-204ENST00000400301 ESF1Q9H501 851 aaKnown RBP24.34■■□□□ 1.49
USP48-204ENST00000400301 KIF15Q9NS87 1388 aa24.33■■□□□ 1.49
USP48-204ENST00000400301 PRG4Q92954 1404 aaPredicted RBP24.33■■□□□ 1.49
USP48-204ENST00000400301 NEUROD2Q15784 382 aa24.33■■□□□ 1.49
USP48-204ENST00000400301 TNNT2P45379 298 aaPredicted RBP24.31■■□□□ 1.48
USP48-204ENST00000400301 IFT140Q96RY7 1462 aa24.31■■□□□ 1.48
USP48-204ENST00000400301 NOP58Q9Y2X3 529 aaKnown RBP24.3■■□□□ 1.48
USP48-204ENST00000400301 MYBBP1AQ9BQG0 1328 aaKnown RBP24.29■■□□□ 1.48
USP48-204ENST00000400301 UPF2Q9HAU5 1272 aaKnown RBP24.28■■□□□ 1.48
USP48-204ENST00000400301 DAPK1P53355 1430 aa24.28■■□□□ 1.48
USP48-204ENST00000400301 SPAG9O60271 1321 aaKnown RBP24.28■■□□□ 1.48
USP48-204ENST00000400301 TROQ12816 1431 aaPredicted RBP24.27■■□□□ 1.48
USP48-204ENST00000400301 CFAP53Q96M91 514 aa24.27■■□□□ 1.48
USP48-204ENST00000400301 IQGAP2Q13576 1575 aa24.27■■□□□ 1.48
USP48-204ENST00000400301 SNAPC4Q5SXM2 1469 aa24.26■■□□□ 1.47
USP48-204ENST00000400301 KIF3BO15066 747 aa24.26■■□□□ 1.47
USP48-204ENST00000400301 SLC24A1O60721 1099 aa24.25■■□□□ 1.47
USP48-204ENST00000400301 PTPRKQ15262 1439 aa24.25■■□□□ 1.47
USP48-204ENST00000400301 PTPN23Q9H3S7 1636 aa24.24■■□□□ 1.47
USP48-204ENST00000400301 CCDC184Q52MB2 194 aa24.24■■□□□ 1.47
USP48-204ENST00000400301 KIAA0586Q9BVV6 1533 aa24.24■■□□□ 1.47
USP48-204ENST00000400301 PANK3Q9H999 370 aa24.23■■□□□ 1.47
USP48-204ENST00000400301 GGT6Q6P531 493 aa24.22■■□□□ 1.47
USP48-204ENST00000400301 RGS3P49796 1198 aa24.2■■□□□ 1.46
USP48-204ENST00000400301 DDRGK1Q96HY6 314 aa24.19■■□□□ 1.46
USP48-204ENST00000400301 KIAA1107Q9UPP5 1409 aa24.18■■□□□ 1.46
USP48-204ENST00000400301 ROCK1Q13464 1354 aa24.18■■□□□ 1.46
USP48-204ENST00000400301 ARID4BQ4LE39 1312 aaPredicted RBP24.18■■□□□ 1.46
USP48-204ENST00000400301 PDE3BQ13370 1112 aa24.17■■□□□ 1.46
USP48-204ENST00000400301 C11orf95C9JLR9 678 aaPredicted RBP24.16■■□□□ 1.46
USP48-204ENST00000400301 FRAT1Q92837 279 aaPredicted RBP24.16■■□□□ 1.46
USP48-204ENST00000400301 ANKRD30BQ9BXX2 1392 aa24.15■■□□□ 1.46
USP48-204ENST00000400301 ABCC5O15440 1437 aa24.14■■□□□ 1.45
USP48-204ENST00000400301 MORC1Q86VD1 984 aa24.14■■□□□ 1.45
USP48-204ENST00000400301 LAS1LQ9Y4W2 734 aaKnown RBP24.12■■□□□ 1.45
USP48-204ENST00000400301 C9orf84Q5VXU9 1444 aa24.12■■□□□ 1.45
USP48-204ENST00000400301 PLPPR3Q6T4P5 718 aa24.1■■□□□ 1.45
USP48-204ENST00000400301 SAFB2Q14151 953 aaKnown RBP eCLIP24.1■■□□□ 1.451e-6■■■□□ 15.2
USP48-204ENST00000400301 POGKQ9P215 609 aa24.09■■□□□ 1.45
USP48-204ENST00000400301 PPM1GO15355 546 aaPredicted RBP24.09■■□□□ 1.45
USP48-204ENST00000400301 SYNJ2O15056 1496 aa24.08■■□□□ 1.45
USP48-204ENST00000400301 ZNF608Q9ULD9 1512 aaPredicted RBP24.08■■□□□ 1.44
USP48-204ENST00000400301 PLB1Q6P1J6 1458 aa24.07■■□□□ 1.44
USP48-204ENST00000400301 TCERG1O14776 1098 aaKnown RBP24.07■■□□□ 1.44
USP48-204ENST00000400301 EIF3AQ14152 1382 aaKnown RBP24.06■■□□□ 1.44
USP48-204ENST00000400301 U2SURPO15042 1029 aaKnown RBP24.06■■□□□ 1.44
USP48-204ENST00000400301 RRP1P56182 461 aaKnown RBP24.05■■□□□ 1.44
USP48-204ENST00000400301 EXOC6Q8TAG9 804 aa24.05■■□□□ 1.44
USP48-204ENST00000400301 GOLGA2Q08379 1002 aa24.05■■□□□ 1.44
USP48-204ENST00000400301 CCDC146Q8IYE0 955 aa24.05■■□□□ 1.44
USP48-204ENST00000400301 CFAP43Q8NDM7 1665 aa24.04■■□□□ 1.44
USP48-204ENST00000400301 NBPF1Q3BBV0 1214 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms