RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 G3V3G9 751 aa9.7□□□□□ -0.86
HMGB1-204ENST00000399489 RIMBP2O15034 1052 aa9.69□□□□□ -0.86
HMGB1-204ENST00000399489 VGFO15240 615 aaPredicted RBP9.69□□□□□ -0.86
HMGB1-204ENST00000399489 A0A0G2JS52 829 aa9.65□□□□□ -0.87
HMGB1-204ENST00000399489 ECM2O94769 699 aaPredicted RBP9.65□□□□□ -0.87
HMGB1-204ENST00000399489 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.62□□□□□ -0.87
HMGB1-204ENST00000399489 TRAF7Q6Q0C0 670 aa9.62□□□□□ -0.87
HMGB1-204ENST00000399489 ZFP91Q96JP5 570 aaPredicted RBP9.62□□□□□ -0.87
HMGB1-204ENST00000399489 ZSWIM6Q9HCJ5 1215 aa9.62□□□□□ -0.87
HMGB1-204ENST00000399489 EFCAB3Q8N7B9 438 aa9.61□□□□□ -0.87
HMGB1-204ENST00000399489 LCE2BO14633 110 aa9.6□□□□□ -0.87
HMGB1-204ENST00000399489 RNF25Q96BH1 459 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-204ENST00000399489 SOX12O15370 315 aa9.59□□□□□ -0.87
HMGB1-204ENST00000399489 ILDR1Q86SU0 546 aaPredicted RBP9.59□□□□□ -0.87
HMGB1-204ENST00000399489 LAPTM4AQ15012 233 aa9.58□□□□□ -0.88
HMGB1-204ENST00000399489 BOLA1Q9Y3E2 137 aa9.58□□□□□ -0.88
HMGB1-204ENST00000399489 DPY19L2Q6NUT2 758 aa9.55□□□□□ -0.88
HMGB1-204ENST00000399489 ZNF775Q96BV0 537 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-204ENST00000399489 STK24Q9Y6E0 443 aa9.54□□□□□ -0.88
HMGB1-204ENST00000399489 BCL11BQ9C0K0 894 aaPredicted RBP9.53□□□□□ -0.88
HMGB1-204ENST00000399489 STK25O00506 426 aa9.52□□□□□ -0.89
HMGB1-204ENST00000399489 NLRP6P59044 892 aa9.51□□□□□ -0.89
HMGB1-204ENST00000399489 PKD2Q13563 968 aa9.51□□□□□ -0.89
HMGB1-204ENST00000399489 PBX2P40425 430 aa9.51□□□□□ -0.89
HMGB1-204ENST00000399489 PHF8Q9UPP1 1060 aa9.49□□□□□ -0.89
HMGB1-204ENST00000399489 RGL2O15211 777 aa9.48□□□□□ -0.89
HMGB1-204ENST00000399489 GPR153Q6NV75 609 aa9.48□□□□□ -0.89
HMGB1-204ENST00000399489 ZNF787Q6DD87 383 aa9.46□□□□□ -0.89
HMGB1-204ENST00000399489 MICALL2Q8IY33 904 aa9.45□□□□□ -0.9
HMGB1-204ENST00000399489 MS4A4AQ96JQ5 239 aa9.42□□□□□ -0.9
HMGB1-204ENST00000399489 ZNF316A6NFI3 1004 aaPredicted RBP9.39□□□□□ -0.91
HMGB1-204ENST00000399489 SLC24A1O60721 1099 aa9.39□□□□□ -0.91
HMGB1-204ENST00000399489 FBXO22Q8NEZ5 403 aa9.38□□□□□ -0.91
HMGB1-204ENST00000399489 MFRPQ9BY79 579 aa9.37□□□□□ -0.91
HMGB1-204ENST00000399489 ADGRD1Q6QNK2 874 aa9.34□□□□□ -0.92
HMGB1-204ENST00000399489 HS6ST3Q8IZP7 471 aa9.33□□□□□ -0.92
HMGB1-204ENST00000399489 CHGAP10645 457 aaKnown RBP9.31□□□□□ -0.92
HMGB1-204ENST00000399489 POTEEQ6S8J3 1075 aa9.31□□□□□ -0.92
HMGB1-204ENST00000399489 TMEM92Q6UXU6 159 aa9.3□□□□□ -0.92
HMGB1-204ENST00000399489 KCTD12Q96CX2 325 aaKnown RBP9.3□□□□□ -0.92
HMGB1-204ENST00000399489 STK17AQ9UEE5 414 aa9.29□□□□□ -0.92
HMGB1-204ENST00000399489 RYDENQ9NUL5 291 aaKnown RBP9.28□□□□□ -0.92
HMGB1-204ENST00000399489 TMC2Q8TDI7 906 aa9.27□□□□□ -0.93
HMGB1-204ENST00000399489 GFRA3O60609 400 aa9.25□□□□□ -0.93
HMGB1-204ENST00000399489 SUZ12Q15022 739 aaKnown RBP9.25□□□□□ -0.93
HMGB1-204ENST00000399489 HRO43593 1189 aa9.24□□□□□ -0.93
HMGB1-204ENST00000399489 DCAF8L2P0C7V8 631 aa9.24□□□□□ -0.93
HMGB1-204ENST00000399489 TK2O00142 265 aa9.22□□□□□ -0.93
HMGB1-204ENST00000399489 C2orf72A6NCS6 295 aa9.22□□□□□ -0.93
HMGB1-204ENST00000399489 ARSIQ5FYB1 569 aa9.22□□□□□ -0.93
HMGB1-204ENST00000399489 AXIN2Q9Y2T1 843 aa9.21□□□□□ -0.94
HMGB1-204ENST00000399489 PPP1R37O75864 691 aa9.19□□□□□ -0.94
HMGB1-204ENST00000399489 DNAJC5Q9H3Z4 198 aa9.19□□□□□ -0.94
HMGB1-204ENST00000399489 KIF3CO14782 793 aa9.19□□□□□ -0.94
HMGB1-204ENST00000399489 NRG2O14511 850 aaPredicted RBP9.17□□□□□ -0.94
HMGB1-204ENST00000399489 PTPN5P54829 565 aa9.17□□□□□ -0.94
HMGB1-204ENST00000399489 LCE2AQ5TA79 106 aaPredicted RBP9.16□□□□□ -0.94
HMGB1-204ENST00000399489 TREML4Q6UXN2 200 aa9.14□□□□□ -0.95
HMGB1-204ENST00000399489 SLC34A2O95436 690 aa9.13□□□□□ -0.95
HMGB1-204ENST00000399489 NKX1-1Q15270 411 aaPredicted RBP9.11□□□□□ -0.95
HMGB1-204ENST00000399489 ARHGAP33O14559 1287 aa9.11□□□□□ -0.95
HMGB1-204ENST00000399489 PCDHGA4Q9Y5G9 962 aa9.11□□□□□ -0.95
HMGB1-204ENST00000399489 GPHNQ9NQX3 736 aaPredicted RBP9.1□□□□□ -0.95
HMGB1-204ENST00000399489 TBC1D12O60347 775 aa9.09□□□□□ -0.95
HMGB1-204ENST00000399489 FOXK1P85037 733 aa9.09□□□□□ -0.95
HMGB1-204ENST00000399489 PLPP6Q8IY26 295 aa9.08□□□□□ -0.96
HMGB1-204ENST00000399489 STAC3Q96MF2 364 aa9.08□□□□□ -0.96
HMGB1-204ENST00000399489 NUDT7P0C024 238 aa9.08□□□□□ -0.96
HMGB1-204ENST00000399489 KHSRPQ92945 711 aaKnown RBP eCLIP9.08□□□□□ -0.962e-8■□□□□ 8.9
HMGB1-204ENST00000399489 PSDA5PKW4 1024 aaPredicted RBP9.05□□□□□ -0.96
HMGB1-204ENST00000399489 PDE4AP27815 886 aa9.05□□□□□ -0.96
HMGB1-204ENST00000399489 AMER1Q5JTC6 1135 aaPredicted RBP9.04□□□□□ -0.96
HMGB1-204ENST00000399489 DSG2Q14126 1118 aa9.03□□□□□ -0.96
HMGB1-204ENST00000399489 PTCD2Q8WV60 388 aaKnown RBP9.03□□□□□ -0.96
HMGB1-204ENST00000399489 GTPBP6O43824 516 aaPredicted RBP9.02□□□□□ -0.96
HMGB1-204ENST00000399489 LHX6Q9UPM6 363 aa9.02□□□□□ -0.96
HMGB1-204ENST00000399489 ITGBL1O95965 494 aaPredicted RBP9□□□□□ -0.97
HMGB1-204ENST00000399489 PPP1R15BQ5SWA1 713 aa9□□□□□ -0.97
HMGB1-204ENST00000399489 CRISPLD2Q9H0B8 497 aa9□□□□□ -0.97
HMGB1-204ENST00000399489 INSM1Q01101 510 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-204ENST00000399489 THSD4Q6ZMP0 1018 aa8.97□□□□□ -0.97
HMGB1-204ENST00000399489 PPP4R3BQ5MIZ7 849 aa8.96□□□□□ -0.98
HMGB1-204ENST00000399489 BBXQ8WY36 941 aaPredicted RBP8.96□□□□□ -0.98
HMGB1-204ENST00000399489 KCNH8Q96L42 1107 aa8.96□□□□□ -0.98
HMGB1-204ENST00000399489 UPF1Q92900 1129 aaKnown RBP eCLIP8.95□□□□□ -0.98
HMGB1-204ENST00000399489 DDX27Q96GQ7 796 aaKnown RBP8.95□□□□□ -0.98
HMGB1-204ENST00000399489 LARP6Q9BRS8 491 aaKnown RBP8.95□□□□□ -0.98
HMGB1-204ENST00000399489 KRTAP4-8Q9BYQ9 185 aa8.94□□□□□ -0.98
HMGB1-204ENST00000399489 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.94□□□□□ -0.98
HMGB1-204ENST00000399489 OXER1Q8TDS5 423 aa8.94□□□□□ -0.98
HMGB1-204ENST00000399489 NCKAP5LQ9HCH0 1330 aa8.93□□□□□ -0.98
HMGB1-204ENST00000399489 DMRTA1Q5VZB9 504 aa8.92□□□□□ -0.98
HMGB1-204ENST00000399489 KDM4FA0A1W2PPD8 638 aa8.9□□□□□ -0.98
HMGB1-204ENST00000399489 MAP3K9P80192 1104 aa8.89□□□□□ -0.99
HMGB1-204ENST00000399489 WIPF1O43516 503 aa8.88□□□□□ -0.99
HMGB1-204ENST00000399489 MFSD10Q14728 455 aa8.88□□□□□ -0.99
HMGB1-204ENST00000399489 RTN4Q9NQC3 1192 aaKnown RBP8.88□□□□□ -0.99
HMGB1-204ENST00000399489 SPRYD3Q8NCJ5 442 aa8.88□□□□□ -0.99
HMGB1-204ENST00000399489 ZNF454Q8N9F8 522 aa8.86□□□□□ -0.99
HMGB1-204ENST00000399489 EVI5O60447 810 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms