RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 ARHGEF12Q9NZN5 1544 aa26.99■■□□□ 1.91
CUX2-202ENST00000397643 PLPPR3Q6T4P5 718 aa26.98■■□□□ 1.91
CUX2-202ENST00000397643 MLECQ14165 292 aa26.96■■□□□ 1.91
CUX2-202ENST00000397643 MYO5CQ9NQX4 1742 aa26.96■■□□□ 1.91
CUX2-202ENST00000397643 ATP10AO60312 1499 aa26.94■■□□□ 1.9
CUX2-202ENST00000397643 C9orf84Q5VXU9 1444 aa26.94■■□□□ 1.9
CUX2-202ENST00000397643 KIF14Q15058 1648 aa26.94■■□□□ 1.9
CUX2-202ENST00000397643 ARHGAP35Q9NRY4 1499 aa26.93■■□□□ 1.9
CUX2-202ENST00000397643 FMN1Q68DA7 1419 aa26.92■■□□□ 1.9
CUX2-202ENST00000397643 KDM5CP41229 1560 aa26.88■■□□□ 1.89
CUX2-202ENST00000397643 EFCAB2Q5VUJ9 269 aa26.88■■□□□ 1.89
CUX2-202ENST00000397643 PREX1Q8TCU6 1659 aa26.87■■□□□ 1.89
CUX2-202ENST00000397643 ZNF518AQ6AHZ1 1483 aa26.86■■□□□ 1.89
CUX2-202ENST00000397643 TROQ12816 1431 aaPredicted RBP26.85■■□□□ 1.89
CUX2-202ENST00000397643 CERKQ8TCT0 537 aa26.84■■□□□ 1.89
CUX2-202ENST00000397643 LRRIQ1Q96JM4 1722 aa26.83■■□□□ 1.89
CUX2-202ENST00000397643 ATP1B4Q9UN42 357 aaPredicted RBP26.82■■□□□ 1.88
CUX2-202ENST00000397643 ARHGAP5Q13017 1502 aa26.81■■□□□ 1.88
CUX2-202ENST00000397643 DIP2CQ9Y2E4 1556 aa26.81■■□□□ 1.88
CUX2-202ENST00000397643 UBTFP17480 764 aaKnown RBP26.81■■□□□ 1.88
CUX2-202ENST00000397643 CDK11AQ9UQ88 783 aaPredicted RBP26.81■■□□□ 1.88
CUX2-202ENST00000397643 CEBPAP49715 358 aaPredicted RBP26.8■■□□□ 1.88
CUX2-202ENST00000397643 AFAP1Q8N556 730 aa26.79■■□□□ 1.88
CUX2-202ENST00000397643 EHMT2Q96KQ7 1210 aa26.79■■□□□ 1.88
CUX2-202ENST00000397643 REREQ9P2R6 1566 aa26.79■■□□□ 1.88
CUX2-202ENST00000397643 STRCQ7RTU9 1775 aa26.76■■□□□ 1.88
CUX2-202ENST00000397643 CDC42BPBQ9Y5S2 1711 aa26.76■■□□□ 1.87
CUX2-202ENST00000397643 ABCA6Q8N139 1617 aa26.76■■□□□ 1.87
CUX2-202ENST00000397643 CLIP1P30622 1438 aa26.75■■□□□ 1.87
CUX2-202ENST00000397643 MLH3Q9UHC1 1453 aa26.73■■□□□ 1.87
CUX2-202ENST00000397643 PREX2Q70Z35 1606 aa26.71■■□□□ 1.87
CUX2-202ENST00000397643 ABCC1P33527 1531 aa26.7■■□□□ 1.87
CUX2-202ENST00000397643 UHRF1BP1Q6BDS2 1440 aa26.7■■□□□ 1.86
CUX2-202ENST00000397643 TRAPPC8Q9Y2L5 1435 aa26.69■■□□□ 1.86
CUX2-202ENST00000397643 SETD1BQ9UPS6 1966 aaKnown RBP26.69■■□□□ 1.86
CUX2-202ENST00000397643 AGLP35573 1532 aa26.69■■□□□ 1.86
CUX2-202ENST00000397643 C3P01024 1663 aa26.68■■□□□ 1.86
CUX2-202ENST00000397643 ITSN2Q9NZM3 1697 aa26.66■■□□□ 1.86
CUX2-202ENST00000397643 CASKIN1Q8WXD9 1431 aa26.63■■□□□ 1.85
CUX2-202ENST00000397643 KIDINS220Q9ULH0 1771 aa26.62■■□□□ 1.85
CUX2-202ENST00000397643 DMRT2Q9Y5R5 561 aa26.62■■□□□ 1.85
CUX2-202ENST00000397643 CCDC18Q5T9S5 1454 aa26.62■■□□□ 1.85
CUX2-202ENST00000397643 MYT1LQ9UL68 1186 aa26.61■■□□□ 1.85
CUX2-202ENST00000397643 CDC42BPAQ5VT25 1732 aa26.59■■□□□ 1.85
CUX2-202ENST00000397643 PTPRTO14522 1441 aa26.59■■□□□ 1.85
CUX2-202ENST00000397643 CHIC1Q5VXU3 224 aa26.58■■□□□ 1.85
CUX2-202ENST00000397643 SAMD9LQ8IVG5 1584 aa26.54■■□□□ 1.84
CUX2-202ENST00000397643 CNTLNQ9NXG0 1405 aa26.53■■□□□ 1.84
CUX2-202ENST00000397643 LTBP4Q8N2S1 1624 aa26.52■■□□□ 1.84
CUX2-202ENST00000397643 NCOA1Q15788 1441 aa26.51■■□□□ 1.83
CUX2-202ENST00000397643 FYCO1Q9BQS8 1478 aa26.5■■□□□ 1.83
CUX2-202ENST00000397643 MROH2AA6NES4 1674 aa26.48■■□□□ 1.83
CUX2-202ENST00000397643 ESF1Q9H501 851 aaKnown RBP26.48■■□□□ 1.83
CUX2-202ENST00000397643 SYCP2Q9BX26 1530 aa26.48■■□□□ 1.83
CUX2-202ENST00000397643 GPATCH8Q9UKJ3 1502 aaKnown RBP26.47■■□□□ 1.83
CUX2-202ENST00000397643 NPATQ14207 1427 aa26.45■■□□□ 1.82
CUX2-202ENST00000397643 DISP3Q9P2K9 1392 aa26.45■■□□□ 1.82
CUX2-202ENST00000397643 ILDR2Q71H61 639 aa26.44■■□□□ 1.82
CUX2-202ENST00000397643 PLXNC1O60486 1568 aa26.42■■□□□ 1.82
CUX2-202ENST00000397643 IQSEC2Q5JU85 1478 aa26.42■■□□□ 1.82
CUX2-202ENST00000397643 CAMSAP1Q5T5Y3 1602 aa26.41■■□□□ 1.82
CUX2-202ENST00000397643 INO80Q9ULG1 1556 aaPredicted RBP26.41■■□□□ 1.82
CUX2-202ENST00000397643 ATP7AQ04656 1500 aa26.4■■□□□ 1.82
CUX2-202ENST00000397643 ZMYM3Q14202 1370 aa26.4■■□□□ 1.82
CUX2-202ENST00000397643 SUPT6HQ7KZ85 1726 aaKnown RBP26.39■■□□□ 1.82
CUX2-202ENST00000397643 ZNF777Q9ULD5 760 aaPredicted RBP26.39■■□□□ 1.82
CUX2-202ENST00000397643 SPAG9O60271 1321 aaKnown RBP26.39■■□□□ 1.81
CUX2-202ENST00000397643 KIAA1107Q9UPP5 1409 aa26.38■■□□□ 1.81
CUX2-202ENST00000397643 CLTCQ00610 1675 aaKnown RBP26.36■■□□□ 1.81
CUX2-202ENST00000397643 HNRNPMP52272 730 aaKnown RBP eCLIP26.36■■□□□ 1.81
CUX2-202ENST00000397643 SPATA31D1Q6ZQQ2 1576 aa26.36■■□□□ 1.81
CUX2-202ENST00000397643 ZNF142P52746 1687 aaPredicted RBP26.35■■□□□ 1.81
CUX2-202ENST00000397643 MYO3AQ8NEV4 1616 aa26.34■■□□□ 1.81
CUX2-202ENST00000397643 A2MP01023 1474 aa26.34■■□□□ 1.81
CUX2-202ENST00000397643 PLEKHH2Q8IVE3 1493 aa26.33■■□□□ 1.81
CUX2-202ENST00000397643 PTPRKQ15262 1439 aa26.31■■□□□ 1.8
CUX2-202ENST00000397643 PLA2R1Q13018 1463 aa26.3■■□□□ 1.8
CUX2-202ENST00000397643 SOCS7O14512 581 aa26.3■■□□□ 1.8
CUX2-202ENST00000397643 CEP170BQ9Y4F5 1589 aaPredicted RBP26.29■■□□□ 1.8
CUX2-202ENST00000397643 CFDP1Q9UEE9 299 aaPredicted RBP26.29■■□□□ 1.8
CUX2-202ENST00000397643 NCKAP5LQ9HCH0 1330 aa26.29■■□□□ 1.8
CUX2-202ENST00000397643 TCOF1Q13428 1488 aaKnown RBP26.28■■□□□ 1.8
CUX2-202ENST00000397643 CCNB3Q8WWL7 1395 aa26.27■■□□□ 1.8
CUX2-202ENST00000397643 ZNF335Q9H4Z2 1342 aaPredicted RBP26.26■■□□□ 1.79
CUX2-202ENST00000397643 ADGBQ8N7X0 1667 aa26.25■■□□□ 1.79
CUX2-202ENST00000397643 TIAM1Q13009 1591 aa26.24■■□□□ 1.79
CUX2-202ENST00000397643 MBD5Q9P267 1494 aa26.23■■□□□ 1.79
CUX2-202ENST00000397643 PKD2Q13563 968 aa26.21■■□□□ 1.79
CUX2-202ENST00000397643 GGT6Q6P531 493 aa26.21■■□□□ 1.79
CUX2-202ENST00000397643 MTUS2Q5JR59 1369 aa26.2■■□□□ 1.79
CUX2-202ENST00000397643 ZNF644Q9H582 1327 aaPredicted RBP26.19■■□□□ 1.78
CUX2-202ENST00000397643 PPP6R1Q9UPN7 881 aa26.17■■□□□ 1.78
CUX2-202ENST00000397643 EHBP1L1Q8N3D4 1523 aa26.16■■□□□ 1.78
CUX2-202ENST00000397643 A2ML1A8K2U0 1454 aa26.16■■□□□ 1.78
CUX2-202ENST00000397643 DNMT1P26358 1616 aaKnown RBP26.15■■□□□ 1.78
CUX2-202ENST00000397643 RTEL1-TNFRSF6BF6WH68 1400 aa26.14■■□□□ 1.78
CUX2-202ENST00000397643 UBAP1LF5GYI3 381 aa26.13■■□□□ 1.77
CUX2-202ENST00000397643 CEP162Q5TB80 1403 aa26.12■■□□□ 1.77
CUX2-202ENST00000397643 DHX29Q7Z478 1369 aaKnown RBP26.1■■□□□ 1.77
CUX2-202ENST00000397643 NEURL4Q96JN8 1562 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms