RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 ABCC5O15440 1437 aa21.72■■□□□ 1.07
CBX3-202ENST00000396386 ABCC10Q5T3U5 1492 aa21.7■■□□□ 1.06
CBX3-202ENST00000396386 RRP7BPQ9NSQ0 103 aa21.7■■□□□ 1.06
CBX3-202ENST00000396386 CHIC2Q9UKJ5 165 aa21.7■■□□□ 1.06
CBX3-202ENST00000396386 TIMELESSQ9UNS1 1208 aa21.69■■□□□ 1.06
CBX3-202ENST00000396386 ERCC6L2Q5T890 1561 aa21.68■■□□□ 1.06
CBX3-202ENST00000396386 PLEKHD1A6NEE1 506 aa21.67■■□□□ 1.06
CBX3-202ENST00000396386 SIN3AQ96ST3 1273 aa21.67■■□□□ 1.06
CBX3-202ENST00000396386 CFDP1Q9UEE9 299 aaPredicted RBP21.66■■□□□ 1.06
CBX3-202ENST00000396386 RIMBP3CA6NJZ7 1639 aa21.66■■□□□ 1.06
CBX3-202ENST00000396386 RIMBP3BA6NNM3 1639 aa21.66■■□□□ 1.06
CBX3-202ENST00000396386 RIMBP3Q9UFD9 1639 aa21.66■■□□□ 1.06
CBX3-202ENST00000396386 ZNF644Q9H582 1327 aaPredicted RBP21.65■■□□□ 1.06
CBX3-202ENST00000396386 ABCC2Q92887 1545 aa21.65■■□□□ 1.06
CBX3-202ENST00000396386 NEUROD1Q13562 356 aa21.64■■□□□ 1.06
CBX3-202ENST00000396386 PREX2Q70Z35 1606 aa21.63■■□□□ 1.05
CBX3-202ENST00000396386 ACIN1Q9UKV3 1341 aaKnown RBP21.63■■□□□ 1.05
CBX3-202ENST00000396386 ADGRL2O95490 1459 aa21.62■■□□□ 1.05
CBX3-202ENST00000396386 DENND4BO75064 1496 aaPredicted RBP21.58■■□□□ 1.05
CBX3-202ENST00000396386 SHANK2Q9UPX8 1470 aa21.58■■□□□ 1.05
CBX3-202ENST00000396386 TONSLQ96HA7 1378 aa21.58■■□□□ 1.04
CBX3-202ENST00000396386 CDC42BPBQ9Y5S2 1711 aa21.57■■□□□ 1.04
CBX3-202ENST00000396386 ARHGEF5Q12774 1597 aa21.56■■□□□ 1.04
CBX3-202ENST00000396386 TRIM52Q96A61 297 aa21.55■■□□□ 1.04
CBX3-202ENST00000396386 ZNF777Q9ULD5 760 aaPredicted RBP21.54■■□□□ 1.04
CBX3-202ENST00000396386 ZCCHC11Q5TAX3 1644 aaKnown RBP21.54■■□□□ 1.04
CBX3-202ENST00000396386 TTC37Q6PGP7 1564 aa21.53■■□□□ 1.04
CBX3-202ENST00000396386 MYO5CQ9NQX4 1742 aa21.53■■□□□ 1.04
CBX3-202ENST00000396386 NCOA1Q15788 1441 aa21.53■■□□□ 1.04
CBX3-202ENST00000396386 SAMD9LQ8IVG5 1584 aa21.52■■□□□ 1.04
CBX3-202ENST00000396386 UHRF1BP1LA0JNW5 1464 aa21.52■■□□□ 1.04
CBX3-202ENST00000396386 ANKRD30AQ9BXX3 1397 aa21.5■■□□□ 1.03
CBX3-202ENST00000396386 PPP1R15AO75807 674 aaPredicted RBP21.49■■□□□ 1.03
CBX3-202ENST00000396386 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.49■■□□□ 1.032e-7■■□□□ 11.6
CBX3-202ENST00000396386 KDM5BQ9UGL1 1544 aa21.48■■□□□ 1.03
CBX3-202ENST00000396386 C9orf84Q5VXU9 1444 aa21.48■■□□□ 1.03
CBX3-202ENST00000396386 MPHOSPH9Q99550 1183 aa21.47■■□□□ 1.03
CBX3-202ENST00000396386 MIER1Q8N108 512 aa21.47■■□□□ 1.03
CBX3-202ENST00000396386 CCDC141Q6ZP82 1450 aa21.44■■□□□ 1.02
CBX3-202ENST00000396386 ARHGAP5Q13017 1502 aa21.44■■□□□ 1.02
CBX3-202ENST00000396386 PZPP20742 1482 aa21.44■■□□□ 1.02
CBX3-202ENST00000396386 MBD5Q9P267 1494 aa21.43■■□□□ 1.02
CBX3-202ENST00000396386 SYCP2Q9BX26 1530 aa21.41■■□□□ 1.02
CBX3-202ENST00000396386 ANKRD50Q9ULJ7 1429 aa21.4■■□□□ 1.02
CBX3-202ENST00000396386 MAST1Q9Y2H9 1570 aa21.4■■□□□ 1.02
CBX3-202ENST00000396386 CENPBP07199 599 aaPredicted RBP21.38■■□□□ 1.01
CBX3-202ENST00000396386 RPRD2Q5VT52 1461 aaKnown RBP21.38■■□□□ 1.01
CBX3-202ENST00000396386 PLEKHH2Q8IVE3 1493 aa21.38■■□□□ 1.01
CBX3-202ENST00000396386 KDM5DQ9BY66 1539 aa21.38■■□□□ 1.01
CBX3-202ENST00000396386 ANKRD30BQ9BXX2 1392 aa21.38■■□□□ 1.01
CBX3-202ENST00000396386 TSPY4P0CV99 314 aa21.35■■□□□ 1.01
CBX3-202ENST00000396386 TSPY10P0CW01 314 aa21.35■■□□□ 1.01
CBX3-202ENST00000396386 SLC4A1APQ9BWU0 796 aaKnown RBP21.35■■□□□ 1.01
CBX3-202ENST00000396386 KIF15Q9NS87 1388 aa21.34■■□□□ 1.01
CBX3-202ENST00000396386 PLXNC1O60486 1568 aa21.34■■□□□ 1.01
CBX3-202ENST00000396386 HNRNPMP52272 730 aaKnown RBP eCLIP21.32■■□□□ 19e-8■□□□□ 11.2
CBX3-202ENST00000396386 RSPH4AQ5TD94 716 aa21.32■■□□□ 1
CBX3-202ENST00000396386 TEX14Q8IWB6 1497 aa21.32■■□□□ 1
CBX3-202ENST00000396386 KIAA1107Q9UPP5 1409 aa21.32■■□□□ 1
CBX3-202ENST00000396386 FOXD1Q16676 465 aa21.32■■□□□ 1
CBX3-202ENST00000396386 ABCC1P33527 1531 aa21.29■■□□□ 1
CBX3-202ENST00000396386 PLCH2O75038 1416 aa21.29■■□□□ 1
CBX3-202ENST00000396386 ARAP3Q8WWN8 1544 aa21.29■■□□□ 1
CBX3-202ENST00000396386 UNC13BO14795 1591 aa21.27■■□□□ 1
CBX3-202ENST00000396386 CYB5RLQ6IPT4 315 aa21.26■□□□□ 0.99
CBX3-202ENST00000396386 WDR7Q9Y4E6 1490 aa21.25■□□□□ 0.99
CBX3-202ENST00000396386 KCNH8Q96L42 1107 aa21.24■□□□□ 0.99
CBX3-202ENST00000396386 NUP155O75694 1391 aa21.23■□□□□ 0.99
CBX3-202ENST00000396386 ARHGEF12Q9NZN5 1544 aa21.22■□□□□ 0.99
CBX3-202ENST00000396386 L3MBTL2Q969R5 705 aa21.22■□□□□ 0.99
CBX3-202ENST00000396386 YTHDC1Q96MU7 727 aaKnown RBP21.22■□□□□ 0.99
CBX3-202ENST00000396386 ABCA9Q8IUA7 1624 aa21.22■□□□□ 0.99
CBX3-202ENST00000396386 PKD2Q13563 968 aa21.2■□□□□ 0.98
CBX3-202ENST00000396386 DUOX2Q9NRD8 1548 aa21.19■□□□□ 0.98
CBX3-202ENST00000396386 FAM135AQ9P2D6 1515 aa21.19■□□□□ 0.98
CBX3-202ENST00000396386 EFCAB2Q5VUJ9 269 aa21.18■□□□□ 0.98
CBX3-202ENST00000396386 HIRIP3Q9BW71 556 aaPredicted RBP21.18■□□□□ 0.98
CBX3-202ENST00000396386 SCAF1Q9H7N4 1312 aaKnown RBP21.17■□□□□ 0.98
CBX3-202ENST00000396386 IQGAP3Q86VI3 1631 aa21.17■□□□□ 0.98
CBX3-202ENST00000396386 DDX10Q13206 875 aaKnown RBP21.16■□□□□ 0.98
CBX3-202ENST00000396386 ERBINQ96RT1 1412 aa21.15■□□□□ 0.98
CBX3-202ENST00000396386 MAGI2Q86UL8 1455 aa21.13■□□□□ 0.97
CBX3-202ENST00000396386 POLR1AO95602 1720 aaPredicted RBP21.12■□□□□ 0.97
CBX3-202ENST00000396386 ZFYVE16Q7Z3T8 1539 aa21.12■□□□□ 0.97
CBX3-202ENST00000396386 ASXL2Q76L83 1435 aa21.11■□□□□ 0.97
CBX3-202ENST00000396386 TRAPPC8Q9Y2L5 1435 aa21.11■□□□□ 0.97
CBX3-202ENST00000396386 EIF4G2P78344 907 aaKnown RBP eCLIP21.1■□□□□ 0.97
CBX3-202ENST00000396386 HSPA5P11021 654 aaKnown RBP21.09■□□□□ 0.97
CBX3-202ENST00000396386 FANCAO15360 1455 aa21.09■□□□□ 0.97
CBX3-202ENST00000396386 INO80Q9ULG1 1556 aaPredicted RBP21.09■□□□□ 0.97
CBX3-202ENST00000396386 RTEL1-TNFRSF6BF6WH68 1400 aa21.08■□□□□ 0.96
CBX3-202ENST00000396386 NBPF8Q3BBV2 869 aa21.07■□□□□ 0.96
CBX3-202ENST00000396386 CFAP74Q9C0B2 1584 aa21.04■□□□□ 0.96
CBX3-202ENST00000396386 ATP7AQ04656 1500 aa21.04■□□□□ 0.96
CBX3-202ENST00000396386 UHRF1BP1Q6BDS2 1440 aa21.03■□□□□ 0.96
CBX3-202ENST00000396386 DEPDC5O75140 1603 aa21.02■□□□□ 0.96
CBX3-202ENST00000396386 ADGRL1O94910 1474 aa21.02■□□□□ 0.96
CBX3-202ENST00000396386 SPAG9O60271 1321 aaKnown RBP21.01■□□□□ 0.95
CBX3-202ENST00000396386 RALGAPBQ86X10 1494 aa21.01■□□□□ 0.95
CBX3-202ENST00000396386 SPATA31E1Q6ZUB1 1445 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms