RNA–Protein interactions for RNA: ENST00000394991.7

SNCA-205, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCA, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-205ENST00000394991 SCAPERQ9BY12 1400 aa26.65■■□□□ 1.86
SNCA-205ENST00000394991 PLCH2O75038 1416 aa26.64■■□□□ 1.85
SNCA-205ENST00000394991 ARHGEF12Q9NZN5 1544 aa26.62■■□□□ 1.85
SNCA-205ENST00000394991 MLECQ14165 292 aa26.62■■□□□ 1.85
SNCA-205ENST00000394991 PREX1Q8TCU6 1659 aa26.59■■□□□ 1.85
SNCA-205ENST00000394991 KIF14Q15058 1648 aa26.57■■□□□ 1.84
SNCA-205ENST00000394991 ATP10AO60312 1499 aa26.57■■□□□ 1.84
SNCA-205ENST00000394991 C9orf84Q5VXU9 1444 aa26.56■■□□□ 1.84
SNCA-205ENST00000394991 CERKQ8TCT0 537 aa26.53■■□□□ 1.84
SNCA-205ENST00000394991 LRRIQ1Q96JM4 1722 aa26.51■■□□□ 1.83
SNCA-205ENST00000394991 STRCQ7RTU9 1775 aa26.5■■□□□ 1.83
SNCA-205ENST00000394991 KDM5CP41229 1560 aa26.5■■□□□ 1.83
SNCA-205ENST00000394991 ARHGAP35Q9NRY4 1499 aa26.49■■□□□ 1.83
SNCA-205ENST00000394991 EFCAB2Q5VUJ9 269 aa26.48■■□□□ 1.83
SNCA-205ENST00000394991 FMN1Q68DA7 1419 aa26.48■■□□□ 1.83
SNCA-205ENST00000394991 ZNF518AQ6AHZ1 1483 aa26.46■■□□□ 1.83
SNCA-205ENST00000394991 DIP2CQ9Y2E4 1556 aa26.46■■□□□ 1.83
SNCA-205ENST00000394991 CEBPAP49715 358 aaPredicted RBP26.45■■□□□ 1.82
SNCA-205ENST00000394991 ARHGAP5Q13017 1502 aa26.44■■□□□ 1.82
SNCA-205ENST00000394991 ATP1B4Q9UN42 357 aaPredicted RBP26.44■■□□□ 1.82
SNCA-205ENST00000394991 CDC42BPBQ9Y5S2 1711 aa26.44■■□□□ 1.82
SNCA-205ENST00000394991 TROQ12816 1431 aaPredicted RBP26.43■■□□□ 1.82
SNCA-205ENST00000394991 SETD1BQ9UPS6 1966 aaKnown RBP26.43■■□□□ 1.82
SNCA-205ENST00000394991 ABCA6Q8N139 1617 aa26.42■■□□□ 1.82
SNCA-205ENST00000394991 REREQ9P2R6 1566 aa26.41■■□□□ 1.82
SNCA-205ENST00000394991 EHMT2Q96KQ7 1210 aa26.41■■□□□ 1.82
SNCA-205ENST00000394991 C3P01024 1663 aa26.39■■□□□ 1.82
SNCA-205ENST00000394991 AFAP1Q8N556 730 aa26.39■■□□□ 1.82
SNCA-205ENST00000394991 CDK11AQ9UQ88 783 aaPredicted RBP26.38■■□□□ 1.81
SNCA-205ENST00000394991 UBTFP17480 764 aaKnown RBP26.37■■□□□ 1.81
SNCA-205ENST00000394991 PREX2Q70Z35 1606 aa26.36■■□□□ 1.81
SNCA-205ENST00000394991 UHRF1BP1Q6BDS2 1440 aa26.36■■□□□ 1.81
SNCA-205ENST00000394991 CLIP1P30622 1438 aa26.35■■□□□ 1.81
SNCA-205ENST00000394991 ITSN2Q9NZM3 1697 aa26.34■■□□□ 1.81
SNCA-205ENST00000394991 ABCC1P33527 1531 aa26.33■■□□□ 1.81
SNCA-205ENST00000394991 MLH3Q9UHC1 1453 aa26.32■■□□□ 1.8
SNCA-205ENST00000394991 AGLP35573 1532 aa26.3■■□□□ 1.8
SNCA-205ENST00000394991 KIDINS220Q9ULH0 1771 aa26.29■■□□□ 1.8
SNCA-205ENST00000394991 TRAPPC8Q9Y2L5 1435 aa26.29■■□□□ 1.8
SNCA-205ENST00000394991 MYT1LQ9UL68 1186 aa26.28■■□□□ 1.8
SNCA-205ENST00000394991 CDC42BPAQ5VT25 1732 aa26.28■■□□□ 1.8
SNCA-205ENST00000394991 DMRT2Q9Y5R5 561 aa26.27■■□□□ 1.8
SNCA-205ENST00000394991 PTPRTO14522 1441 aa26.24■■□□□ 1.79
SNCA-205ENST00000394991 LTBP4Q8N2S1 1624 aa26.21■■□□□ 1.79
SNCA-205ENST00000394991 CCDC18Q5T9S5 1454 aa26.2■■□□□ 1.78
SNCA-205ENST00000394991 DISP3Q9P2K9 1392 aa26.2■■□□□ 1.78
SNCA-205ENST00000394991 ILDR2Q71H61 639 aa26.18■■□□□ 1.78
SNCA-205ENST00000394991 CASKIN1Q8WXD9 1431 aa26.18■■□□□ 1.78
SNCA-205ENST00000394991 MROH2AA6NES4 1674 aa26.17■■□□□ 1.78
SNCA-205ENST00000394991 SAMD9LQ8IVG5 1584 aa26.16■■□□□ 1.78
SNCA-205ENST00000394991 NCOA1Q15788 1441 aa26.16■■□□□ 1.78
SNCA-205ENST00000394991 CNTLNQ9NXG0 1405 aa26.14■■□□□ 1.78
SNCA-205ENST00000394991 SPATA31D1Q6ZQQ2 1576 aa26.13■■□□□ 1.77
SNCA-205ENST00000394991 ESF1Q9H501 851 aaKnown RBP26.13■■□□□ 1.77
SNCA-205ENST00000394991 SUPT6HQ7KZ85 1726 aaKnown RBP26.12■■□□□ 1.77
SNCA-205ENST00000394991 SYCP2Q9BX26 1530 aa26.11■■□□□ 1.77
SNCA-205ENST00000394991 CAMSAP1Q5T5Y3 1602 aa26.1■■□□□ 1.77
SNCA-205ENST00000394991 IQSEC2Q5JU85 1478 aa26.09■■□□□ 1.77
SNCA-205ENST00000394991 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
SNCA-205ENST00000394991 NPATQ14207 1427 aa26.07■■□□□ 1.76
SNCA-205ENST00000394991 CLTCQ00610 1675 aaKnown RBP26.07■■□□□ 1.76
SNCA-205ENST00000394991 FYCO1Q9BQS8 1478 aa26.07■■□□□ 1.76
SNCA-205ENST00000394991 ZNF142P52746 1687 aaPredicted RBP26.05■■□□□ 1.76
SNCA-205ENST00000394991 GPATCH8Q9UKJ3 1502 aaKnown RBP26.04■■□□□ 1.76
SNCA-205ENST00000394991 PLXNC1O60486 1568 aa26.04■■□□□ 1.76
SNCA-205ENST00000394991 INO80Q9ULG1 1556 aaPredicted RBP26.04■■□□□ 1.76
SNCA-205ENST00000394991 SOCS7O14512 581 aa26.04■■□□□ 1.76
SNCA-205ENST00000394991 ATP7AQ04656 1500 aa26.04■■□□□ 1.76
SNCA-205ENST00000394991 MYO3AQ8NEV4 1616 aa26.03■■□□□ 1.76
SNCA-205ENST00000394991 ZNF777Q9ULD5 760 aaPredicted RBP26.02■■□□□ 1.76
SNCA-205ENST00000394991 ZMYM3Q14202 1370 aa26.02■■□□□ 1.76
SNCA-205ENST00000394991 SPAG9O60271 1321 aaKnown RBP26■■□□□ 1.75
SNCA-205ENST00000394991 HNRNPMP52272 730 aaKnown RBP eCLIP25.98■■□□□ 1.75
SNCA-205ENST00000394991 NCKAP5LQ9HCH0 1330 aa25.96■■□□□ 1.75
SNCA-205ENST00000394991 CEP170BQ9Y4F5 1589 aaPredicted RBP25.96■■□□□ 1.75
SNCA-205ENST00000394991 A2MP01023 1474 aa25.96■■□□□ 1.75
SNCA-205ENST00000394991 KIAA1107Q9UPP5 1409 aa25.95■■□□□ 1.74
SNCA-205ENST00000394991 PTPRKQ15262 1439 aa25.94■■□□□ 1.74
SNCA-205ENST00000394991 ZNF335Q9H4Z2 1342 aaPredicted RBP25.93■■□□□ 1.74
SNCA-205ENST00000394991 PLA2R1Q13018 1463 aa25.93■■□□□ 1.74
SNCA-205ENST00000394991 ADGBQ8N7X0 1667 aa25.93■■□□□ 1.74
SNCA-205ENST00000394991 PLEKHH2Q8IVE3 1493 aa25.92■■□□□ 1.74
SNCA-205ENST00000394991 TCOF1Q13428 1488 aaKnown RBP25.91■■□□□ 1.74
SNCA-205ENST00000394991 CFDP1Q9UEE9 299 aaPredicted RBP25.87■■□□□ 1.73
SNCA-205ENST00000394991 CCNB3Q8WWL7 1395 aa25.86■■□□□ 1.73
SNCA-205ENST00000394991 TIAM1Q13009 1591 aa25.86■■□□□ 1.73
SNCA-205ENST00000394991 GGT6Q6P531 493 aa25.85■■□□□ 1.73
SNCA-205ENST00000394991 PKD2Q13563 968 aa25.84■■□□□ 1.73
SNCA-205ENST00000394991 DNMT1P26358 1616 aaKnown RBP25.83■■□□□ 1.73
SNCA-205ENST00000394991 UBAP1LF5GYI3 381 aa25.82■■□□□ 1.72
SNCA-205ENST00000394991 POLR1AO95602 1720 aaPredicted RBP25.81■■□□□ 1.72
SNCA-205ENST00000394991 MTUS2Q5JR59 1369 aa25.8■■□□□ 1.72
SNCA-205ENST00000394991 A2ML1A8K2U0 1454 aa25.79■■□□□ 1.72
SNCA-205ENST00000394991 MBD5Q9P267 1494 aa25.79■■□□□ 1.72
SNCA-205ENST00000394991 ZNF644Q9H582 1327 aaPredicted RBP25.79■■□□□ 1.72
SNCA-205ENST00000394991 NEURL4Q96JN8 1562 aa25.77■■□□□ 1.72
SNCA-205ENST00000394991 PPP6R1Q9UPN7 881 aa25.76■■□□□ 1.71
SNCA-205ENST00000394991 EHBP1L1Q8N3D4 1523 aa25.75■■□□□ 1.71
SNCA-205ENST00000394991 RTEL1-TNFRSF6BF6WH68 1400 aa25.73■■□□□ 1.71
SNCA-205ENST00000394991 DHX29Q7Z478 1369 aaKnown RBP25.7■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms