RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 CLSTN1O94985 981 aa13.28□□□□□ -0.28
COL4A6-203ENST00000394872 PKD2Q13563 968 aa13.27□□□□□ -0.28
COL4A6-203ENST00000394872 ZNF330Q9Y3S2 320 aaPredicted RBP13.27□□□□□ -0.29
COL4A6-203ENST00000394872 MCCP23508 829 aa13.27□□□□□ -0.29
COL4A6-203ENST00000394872 GOLGA6L4A6NEF3 574 aa13.26□□□□□ -0.29
COL4A6-203ENST00000394872 CCDC9Q9Y3X0 531 aaKnown RBP13.25□□□□□ -0.29
COL4A6-203ENST00000394872 HSCBQ8IWL3 235 aa13.24□□□□□ -0.29
COL4A6-203ENST00000394872 FOXD1Q16676 465 aa13.24□□□□□ -0.29
COL4A6-203ENST00000394872 PDS5BQ9NTI5 1447 aa13.23□□□□□ -0.29
COL4A6-203ENST00000394872 KTN1Q86UP2 1357 aaKnown RBP13.23□□□□□ -0.29
COL4A6-203ENST00000394872 APBB1O00213 710 aa13.23□□□□□ -0.29
COL4A6-203ENST00000394872 SETD5Q9C0A6 1442 aa13.22□□□□□ -0.29
COL4A6-203ENST00000394872 EFCAB2Q5VUJ9 269 aa13.22□□□□□ -0.29
COL4A6-203ENST00000394872 ROCK2O75116 1388 aaKnown RBP13.22□□□□□ -0.29
COL4A6-203ENST00000394872 SOGA1O94964 1423 aa13.22□□□□□ -0.29
COL4A6-203ENST00000394872 HSPA5P11021 654 aaKnown RBP13.22□□□□□ -0.29
COL4A6-203ENST00000394872 CECR2Q9BXF3 1484 aa13.22□□□□□ -0.29
COL4A6-203ENST00000394872 B4GALNT3Q6L9W6 998 aa13.22□□□□□ -0.29
COL4A6-203ENST00000394872 TMX4Q9H1E5 349 aaPredicted RBP13.21□□□□□ -0.29
COL4A6-203ENST00000394872 NRDCO43847 1150 aa13.21□□□□□ -0.29
COL4A6-203ENST00000394872 GNL2Q13823 731 aaKnown RBP13.21□□□□□ -0.3
COL4A6-203ENST00000394872 NCBP3Q53F19 620 aaKnown RBP13.2□□□□□ -0.3
COL4A6-203ENST00000394872 U2AF1L5P0DN76 240 aaPredicted RBP13.2□□□□□ -0.3
COL4A6-203ENST00000394872 U2AF1Q01081 240 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL4A6-203ENST00000394872 IPO8O15397 1037 aaKnown RBP13.2□□□□□ -0.3
COL4A6-203ENST00000394872 CALD1Q05682 793 aaKnown RBP13.2□□□□□ -0.3
COL4A6-203ENST00000394872 NOP58Q9Y2X3 529 aaKnown RBP13.19□□□□□ -0.3
COL4A6-203ENST00000394872 EID1Q9Y6B2 187 aa13.19□□□□□ -0.3
COL4A6-203ENST00000394872 NUP155O75694 1391 aa13.19□□□□□ -0.3
COL4A6-203ENST00000394872 ERICH6BQ5W0A0 696 aa13.18□□□□□ -0.3
COL4A6-203ENST00000394872 CFAP44Q96MT7 982 aa13.18□□□□□ -0.3
COL4A6-203ENST00000394872 NAP1L5Q96NT1 182 aaPredicted RBP13.18□□□□□ -0.3
COL4A6-203ENST00000394872 KIAA1211Q6ZU35 1233 aa13.18□□□□□ -0.3
COL4A6-203ENST00000394872 SPRYD3Q8NCJ5 442 aa13.18□□□□□ -0.3
COL4A6-203ENST00000394872 KIF3BO15066 747 aa13.18□□□□□ -0.3
COL4A6-203ENST00000394872 TIMELESSQ9UNS1 1208 aa13.17□□□□□ -0.3
COL4A6-203ENST00000394872 ANKRD30AQ9BXX3 1397 aa13.17□□□□□ -0.3
COL4A6-203ENST00000394872 EIF3AQ14152 1382 aaKnown RBP13.17□□□□□ -0.3
COL4A6-203ENST00000394872 TDRD9Q8NDG6 1382 aaKnown RBP13.17□□□□□ -0.3
COL4A6-203ENST00000394872 SPAG9O60271 1321 aaKnown RBP13.16□□□□□ -0.3
COL4A6-203ENST00000394872 NUTM2DQ5VT03 806 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-203ENST00000394872 ITPRIPQ8IWB1 547 aa13.15□□□□□ -0.3
COL4A6-203ENST00000394872 CHMP3Q9Y3E7 222 aa13.15□□□□□ -0.3
COL4A6-203ENST00000394872 MPHOSPH9Q99550 1183 aa13.15□□□□□ -0.3
COL4A6-203ENST00000394872 SMARCA2P51531 1590 aa13.14□□□□□ -0.31
COL4A6-203ENST00000394872 NGDNQ8NEJ9 315 aaKnown RBP13.14□□□□□ -0.31
COL4A6-203ENST00000394872 HNRNPMP52272 730 aaKnown RBP eCLIP13.14□□□□□ -0.31
COL4A6-203ENST00000394872 TAF7LQ5H9L4 462 aa13.14□□□□□ -0.31
COL4A6-203ENST00000394872 GORABQ5T7V8 394 aa13.14□□□□□ -0.31
COL4A6-203ENST00000394872 DRC7Q8IY82 874 aa13.14□□□□□ -0.31
COL4A6-203ENST00000394872 FMN1Q68DA7 1419 aa13.14□□□□□ -0.31
COL4A6-203ENST00000394872 ABCC8Q09428 1581 aa13.13□□□□□ -0.31
COL4A6-203ENST00000394872 STK31Q9BXU1 1019 aa13.13□□□□□ -0.31
COL4A6-203ENST00000394872 CCDC88BA6NC98 1476 aa13.13□□□□□ -0.31
COL4A6-203ENST00000394872 WASHC2CQ9Y4E1 1318 aa13.13□□□□□ -0.31
COL4A6-203ENST00000394872 TERF2IPQ9NYB0 399 aa13.12□□□□□ -0.31
COL4A6-203ENST00000394872 KANK4Q5T7N3 995 aaPredicted RBP13.12□□□□□ -0.31
COL4A6-203ENST00000394872 VPS8Q8N3P4 1428 aa13.12□□□□□ -0.31
COL4A6-203ENST00000394872 G3V3G9 751 aa13.12□□□□□ -0.31
COL4A6-203ENST00000394872 DCAF8Q5TAQ9 597 aa13.12□□□□□ -0.31
COL4A6-203ENST00000394872 CCER2I3L3R5 266 aa13.11□□□□□ -0.31
COL4A6-203ENST00000394872 CHMP4AQ9BY43 222 aa13.11□□□□□ -0.31
COL4A6-203ENST00000394872 RALBP1Q15311 655 aa13.11□□□□□ -0.31
COL4A6-203ENST00000394872 CHAF1AQ13111 956 aaPredicted RBP13.1□□□□□ -0.31
COL4A6-203ENST00000394872 AMPHP49418 695 aa13.1□□□□□ -0.31
COL4A6-203ENST00000394872 LTV1Q96GA3 475 aaPredicted RBP13.09□□□□□ -0.31
COL4A6-203ENST00000394872 GPATCH3Q96I76 525 aa13.09□□□□□ -0.31
COL4A6-203ENST00000394872 RTN4Q9NQC3 1192 aaKnown RBP13.09□□□□□ -0.31
COL4A6-203ENST00000394872 RWDD1Q9H446 243 aaPredicted RBP13.09□□□□□ -0.31
COL4A6-203ENST00000394872 NUTM2FA1L443 756 aa13.09□□□□□ -0.31
COL4A6-203ENST00000394872 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL4A6-203ENST00000394872 RCAN3Q9UKA8 241 aa13.07□□□□□ -0.32
COL4A6-203ENST00000394872 MSNP26038 577 aaKnown RBP13.07□□□□□ -0.32
COL4A6-203ENST00000394872 SMC4Q9NTJ3 1288 aa13.07□□□□□ -0.32
COL4A6-203ENST00000394872 SLC4A10Q6U841 1118 aa13.07□□□□□ -0.32
COL4A6-203ENST00000394872 RAB3GAP2Q9H2M9 1393 aa13.07□□□□□ -0.32
COL4A6-203ENST00000394872 TRIM6-TRIM34B2RNG4 842 aa13.05□□□□□ -0.32
COL4A6-203ENST00000394872 L1TD1Q5T7N2 865 aaKnown RBP13.05□□□□□ -0.32
COL4A6-203ENST00000394872 MROH2BQ7Z745 1585 aa13.05□□□□□ -0.32
COL4A6-203ENST00000394872 KIAA2012Q0VF49 1180 aa13.05□□□□□ -0.32
COL4A6-203ENST00000394872 HDAC5Q9UQL6 1122 aa13.05□□□□□ -0.32
COL4A6-203ENST00000394872 HSP90B1P14625 803 aaKnown RBP13.05□□□□□ -0.32
COL4A6-203ENST00000394872 CCDC146Q8IYE0 955 aa13.05□□□□□ -0.32
COL4A6-203ENST00000394872 GTF2E1P29083 439 aaPredicted RBP13.04□□□□□ -0.32
COL4A6-203ENST00000394872 CCDC18Q5T9S5 1454 aa13.04□□□□□ -0.32
COL4A6-203ENST00000394872 HMMRO75330 724 aa13.03□□□□□ -0.32
COL4A6-203ENST00000394872 PMFBP1Q8TBY8 1022 aa13.03□□□□□ -0.32
COL4A6-203ENST00000394872 RSPH4AQ5TD94 716 aa13.03□□□□□ -0.32
COL4A6-203ENST00000394872 HTATSF1O43719 755 aaKnown RBP13.03□□□□□ -0.32
COL4A6-203ENST00000394872 LMOD3Q0VAK6 560 aa13.03□□□□□ -0.32
COL4A6-203ENST00000394872 TRAK1Q9UPV9 953 aa13.03□□□□□ -0.32
COL4A6-203ENST00000394872 FRAT2O75474 233 aaPredicted RBP13.02□□□□□ -0.32
COL4A6-203ENST00000394872 FHOD3Q2V2M9 1422 aa13.02□□□□□ -0.33
COL4A6-203ENST00000394872 GBP4Q96PP9 640 aa13.02□□□□□ -0.33
COL4A6-203ENST00000394872 PTMSP20962 102 aa13.01□□□□□ -0.33
COL4A6-203ENST00000394872 EVA1CP58658 441 aa13□□□□□ -0.33
COL4A6-203ENST00000394872 JPH4Q96JJ6 628 aa13□□□□□ -0.33
COL4A6-203ENST00000394872 RAPGEF2Q9Y4G8 1499 aa13□□□□□ -0.33
COL4A6-203ENST00000394872 MFAP1P55081 439 aaKnown RBP12.99□□□□□ -0.33
COL4A6-203ENST00000394872 TOMM22Q9NS69 142 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms