RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 HNRNPMP52272 730 aaKnown RBP eCLIP12.09□□□□□ -0.47
LIMCH1-202ENST00000381753 CARD11Q9BXL7 1154 aa12.08□□□□□ -0.47
LIMCH1-202ENST00000381753 USP35Q9P2H5 1018 aa12.08□□□□□ -0.48
LIMCH1-202ENST00000381753 DNAJC5BQ9UF47 199 aa12.08□□□□□ -0.48
LIMCH1-202ENST00000381753 PDE3BQ13370 1112 aa12.07□□□□□ -0.48
LIMCH1-202ENST00000381753 C16orf71Q8IYS4 520 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-202ENST00000381753 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIMCH1-202ENST00000381753 CTDP1Q9Y5B0 961 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-202ENST00000381753 FANCD2Q9BXW9 1451 aa12.06□□□□□ -0.48
LIMCH1-202ENST00000381753 TOM1O60784 492 aa12.06□□□□□ -0.48
LIMCH1-202ENST00000381753 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-202ENST00000381753 ANKLE2Q86XL3 938 aa12.06□□□□□ -0.48
LIMCH1-202ENST00000381753 NEUROD2Q15784 382 aa12.05□□□□□ -0.48
LIMCH1-202ENST00000381753 THEMISQ8N1K5 641 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-202ENST00000381753 TRIM34Q9BYJ4 488 aa12.05□□□□□ -0.48
LIMCH1-202ENST00000381753 CHMP3Q9Y3E7 222 aa12.05□□□□□ -0.48
LIMCH1-202ENST00000381753 STRN4Q9NRL3 753 aa12.04□□□□□ -0.48
LIMCH1-202ENST00000381753 FKBP8Q14318 412 aa12.03□□□□□ -0.48
LIMCH1-202ENST00000381753 CCAR1Q8IX12 1150 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-202ENST00000381753 DCAF11Q8TEB1 546 aa12.02□□□□□ -0.49
LIMCH1-202ENST00000381753 NGLY1Q96IV0 654 aa12.02□□□□□ -0.49
LIMCH1-202ENST00000381753 ABCC8Q09428 1581 aa12.01□□□□□ -0.49
LIMCH1-202ENST00000381753 C1orf141Q5JVX7 400 aa12.01□□□□□ -0.49
LIMCH1-202ENST00000381753 DIEXFQ68CQ4 756 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-202ENST00000381753 TXNDC2Q86VQ3 553 aa12.01□□□□□ -0.49
LIMCH1-202ENST00000381753 HMGB2P26583 209 aaKnown RBP12□□□□□ -0.49
LIMCH1-202ENST00000381753 FAM9BQ8IZU0 186 aa12□□□□□ -0.49
LIMCH1-202ENST00000381753 GORABQ5T7V8 394 aa12□□□□□ -0.49
LIMCH1-202ENST00000381753 ESCO1Q5FWF5 840 aa11.98□□□□□ -0.49
LIMCH1-202ENST00000381753 CNKSR2Q8WXI2 1034 aa11.98□□□□□ -0.49
LIMCH1-202ENST00000381753 RSPH4AQ5TD94 716 aa11.98□□□□□ -0.49
LIMCH1-202ENST00000381753 FHAD1B1AJZ9 1412 aa11.98□□□□□ -0.49
LIMCH1-202ENST00000381753 UPF2Q9HAU5 1272 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-202ENST00000381753 MORC1Q86VD1 984 aa11.98□□□□□ -0.49
LIMCH1-202ENST00000381753 NAP1L2Q9ULW6 460 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-202ENST00000381753 TTC5Q8N0Z6 440 aa11.97□□□□□ -0.49
LIMCH1-202ENST00000381753 GOLGA3Q08378 1498 aa11.97□□□□□ -0.49
LIMCH1-202ENST00000381753 ADAMTS2O95450 1211 aa11.97□□□□□ -0.49
LIMCH1-202ENST00000381753 FGD1P98174 961 aa11.97□□□□□ -0.49
LIMCH1-202ENST00000381753 TERF2IPQ9NYB0 399 aa11.96□□□□□ -0.49
LIMCH1-202ENST00000381753 TMF1P82094 1093 aa11.95□□□□□ -0.5
LIMCH1-202ENST00000381753 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIMCH1-202ENST00000381753 RBM33Q96EV2 1170 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-202ENST00000381753 CHMP4AQ9BY43 222 aa11.95□□□□□ -0.5
LIMCH1-202ENST00000381753 KCNJ4P48050 445 aa11.95□□□□□ -0.5
LIMCH1-202ENST00000381753 WDHD1O75717 1129 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-202ENST00000381753 NLRP2Q9NX02 1062 aa11.94□□□□□ -0.5
LIMCH1-202ENST00000381753 VGFO15240 615 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-202ENST00000381753 NOL10Q9BSC4 688 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-202ENST00000381753 GPRASP1Q5JY77 1395 aa11.92□□□□□ -0.5
LIMCH1-202ENST00000381753 EEA1Q15075 1411 aa11.92□□□□□ -0.5
LIMCH1-202ENST00000381753 ANKRD30AQ9BXX3 1397 aa11.92□□□□□ -0.5
LIMCH1-202ENST00000381753 FTSJ3Q8IY81 847 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-202ENST00000381753 RAD21O60216 631 aa11.91□□□□□ -0.5
LIMCH1-202ENST00000381753 RAPGEF4Q8WZA2 1011 aa11.91□□□□□ -0.5
LIMCH1-202ENST00000381753 PRM3Q9NNZ6 103 aa11.91□□□□□ -0.5
LIMCH1-202ENST00000381753 MRC2Q9UBG0 1479 aa11.9□□□□□ -0.5
LIMCH1-202ENST00000381753 PPP6R1Q9UPN7 881 aa11.9□□□□□ -0.5
LIMCH1-202ENST00000381753 NBPF8Q3BBV2 869 aa11.9□□□□□ -0.5
LIMCH1-202ENST00000381753 NBPF14Q5TI25 921 aa11.9□□□□□ -0.5
LIMCH1-202ENST00000381753 VPS53Q5VIR6 699 aa11.89□□□□□ -0.51
LIMCH1-202ENST00000381753 BCL11BQ9C0K0 894 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-202ENST00000381753 NUP155O75694 1391 aa11.89□□□□□ -0.51
LIMCH1-202ENST00000381753 PKD2Q13563 968 aa11.89□□□□□ -0.51
LIMCH1-202ENST00000381753 AQRO60306 1485 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIMCH1-202ENST00000381753 CASC1Q6TDU7 716 aa11.88□□□□□ -0.51
LIMCH1-202ENST00000381753 GRM1Q13255 1194 aa11.88□□□□□ -0.51
LIMCH1-202ENST00000381753 CC2D1BQ5T0F9 858 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-202ENST00000381753 NGEFQ8N5V2 710 aa11.86□□□□□ -0.51
LIMCH1-202ENST00000381753 TRAK1Q9UPV9 953 aa11.86□□□□□ -0.51
LIMCH1-202ENST00000381753 VPS37DQ86XT2 251 aa11.86□□□□□ -0.51
LIMCH1-202ENST00000381753 TOM1L2Q6ZVM7 507 aa11.86□□□□□ -0.51
LIMCH1-202ENST00000381753 PRG4Q92954 1404 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-202ENST00000381753 NUTM2GQ5VZR2 741 aa11.85□□□□□ -0.51
LIMCH1-202ENST00000381753 COG3Q96JB2 828 aa11.85□□□□□ -0.51
LIMCH1-202ENST00000381753 TCEAL9Q9UHQ7 104 aa11.85□□□□□ -0.51
LIMCH1-202ENST00000381753 SAMD1Q6SPF0 538 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-202ENST00000381753 EIF3AQ14152 1382 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-202ENST00000381753 ATAD2BQ9ULI0 1458 aa11.85□□□□□ -0.51
LIMCH1-202ENST00000381753 HRCP23327 699 aa11.85□□□□□ -0.51
LIMCH1-202ENST00000381753 CC2D2AQ9P2K1 1620 aa11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 TEFQ10587 303 aa11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 FMN1Q68DA7 1419 aa11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 ZRSR1Q15695 479 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 PRDM11Q9NQV5 511 aa11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 TNIKQ9UKE5 1360 aa11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 STK31Q9BXU1 1019 aa11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 MRS2Q9HD23 443 aa11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 MINK1Q8N4C8 1332 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-202ENST00000381753 AMOTL1Q8IY63 956 aa11.83□□□□□ -0.51
LIMCH1-202ENST00000381753 RBM42Q9BTD8 480 aaKnown RBP11.83□□□□□ -0.51
LIMCH1-202ENST00000381753 GAPVD1Q14C86 1478 aa11.83□□□□□ -0.52
LIMCH1-202ENST00000381753 BEGAINQ9BUH8 593 aa11.83□□□□□ -0.52
LIMCH1-202ENST00000381753 CCDC18Q5T9S5 1454 aa11.83□□□□□ -0.52
LIMCH1-202ENST00000381753 DDRGK1Q96HY6 314 aa11.82□□□□□ -0.52
LIMCH1-202ENST00000381753 POLD1P28340 1107 aa11.81□□□□□ -0.52
LIMCH1-202ENST00000381753 CEP162Q5TB80 1403 aa11.81□□□□□ -0.52
LIMCH1-202ENST00000381753 LMTK3Q96Q04 1460 aa11.81□□□□□ -0.52
LIMCH1-202ENST00000381753 CHMP4BQ9H444 224 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-202ENST00000381753 RAPGEF3O95398 923 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms