RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 FMN1Q68DA7 1419 aa20.12■□□□□ 0.81
LSM2-208ENST00000375661 SCAPERQ9BY12 1400 aa20.12■□□□□ 0.81
LSM2-208ENST00000375661 ATP10AO60312 1499 aa20.09■□□□□ 0.81
LSM2-208ENST00000375661 ARHGEF12Q9NZN5 1544 aa20.08■□□□□ 0.81
LSM2-208ENST00000375661 C9orf84Q5VXU9 1444 aa20.08■□□□□ 0.8
LSM2-208ENST00000375661 CDK11AQ9UQ88 783 aaPredicted RBP20.07■□□□□ 0.8
LSM2-208ENST00000375661 PREX1Q8TCU6 1659 aa20.07■□□□□ 0.8
LSM2-208ENST00000375661 KIF14Q15058 1648 aa20.06■□□□□ 0.8
LSM2-208ENST00000375661 EFCAB2Q5VUJ9 269 aa20.06■□□□□ 0.8
LSM2-208ENST00000375661 HSPA2P54652 639 aa20.05■□□□□ 0.8
LSM2-208ENST00000375661 ZNF518AQ6AHZ1 1483 aa20.04■□□□□ 0.8
LSM2-208ENST00000375661 MLECQ14165 292 aa20.03■□□□□ 0.8
LSM2-208ENST00000375661 ARHGAP35Q9NRY4 1499 aa20.03■□□□□ 0.8
LSM2-208ENST00000375661 KDM5CP41229 1560 aa20.03■□□□□ 0.8
LSM2-208ENST00000375661 PLPPR3Q6T4P5 718 aa20.02■□□□□ 0.8
LSM2-208ENST00000375661 TROQ12816 1431 aaPredicted RBP20.02■□□□□ 0.79
LSM2-208ENST00000375661 SETD1BQ9UPS6 1966 aaKnown RBP20.01■□□□□ 0.79
LSM2-208ENST00000375661 UBTFP17480 764 aaKnown RBP20■□□□□ 0.79
LSM2-208ENST00000375661 CLIP1P30622 1438 aa20■□□□□ 0.79
LSM2-208ENST00000375661 REREQ9P2R6 1566 aa20■□□□□ 0.79
LSM2-208ENST00000375661 LRRIQ1Q96JM4 1722 aa19.99■□□□□ 0.79
LSM2-208ENST00000375661 ARHGAP5Q13017 1502 aa19.99■□□□□ 0.79
LSM2-208ENST00000375661 ATP1B4Q9UN42 357 aaPredicted RBP19.99■□□□□ 0.79
LSM2-208ENST00000375661 CDC42BPBQ9Y5S2 1711 aa19.97■□□□□ 0.79
LSM2-208ENST00000375661 CERKQ8TCT0 537 aa19.97■□□□□ 0.79
LSM2-208ENST00000375661 DIP2CQ9Y2E4 1556 aa19.95■□□□□ 0.78
LSM2-208ENST00000375661 PREX2Q70Z35 1606 aa19.94■□□□□ 0.78
LSM2-208ENST00000375661 STRCQ7RTU9 1775 aa19.93■□□□□ 0.78
LSM2-208ENST00000375661 MLH3Q9UHC1 1453 aa19.92■□□□□ 0.78
LSM2-208ENST00000375661 ABCA6Q8N139 1617 aa19.91■□□□□ 0.78
LSM2-208ENST00000375661 AFAP1Q8N556 730 aa19.91■□□□□ 0.78
LSM2-208ENST00000375661 DMRT2Q9Y5R5 561 aa19.91■□□□□ 0.78
LSM2-208ENST00000375661 UHRF1BP1Q6BDS2 1440 aa19.91■□□□□ 0.78
LSM2-208ENST00000375661 AGLP35573 1532 aa19.91■□□□□ 0.78
LSM2-208ENST00000375661 ITSN2Q9NZM3 1697 aa19.91■□□□□ 0.78
LSM2-208ENST00000375661 CCDC18Q5T9S5 1454 aa19.9■□□□□ 0.78
LSM2-208ENST00000375661 C3P01024 1663 aa19.9■□□□□ 0.78
LSM2-208ENST00000375661 ABCC1P33527 1531 aa19.89■□□□□ 0.77
LSM2-208ENST00000375661 CEBPAP49715 358 aaPredicted RBP19.89■□□□□ 0.77
LSM2-208ENST00000375661 MYT1LQ9UL68 1186 aa19.87■□□□□ 0.77
LSM2-208ENST00000375661 CDC42BPAQ5VT25 1732 aa19.86■□□□□ 0.77
LSM2-208ENST00000375661 EHMT2Q96KQ7 1210 aa19.86■□□□□ 0.77
LSM2-208ENST00000375661 CASKIN1Q8WXD9 1431 aa19.85■□□□□ 0.77
LSM2-208ENST00000375661 KIDINS220Q9ULH0 1771 aa19.85■□□□□ 0.77
LSM2-208ENST00000375661 TRAPPC8Q9Y2L5 1435 aa19.83■□□□□ 0.76
LSM2-208ENST00000375661 PTPRTO14522 1441 aa19.82■□□□□ 0.76
LSM2-208ENST00000375661 CNTLNQ9NXG0 1405 aa19.82■□□□□ 0.76
LSM2-208ENST00000375661 MROH2AA6NES4 1674 aa19.81■□□□□ 0.76
LSM2-208ENST00000375661 ESF1Q9H501 851 aaKnown RBP19.8■□□□□ 0.76
LSM2-208ENST00000375661 FYCO1Q9BQS8 1478 aa19.78■□□□□ 0.76
LSM2-208ENST00000375661 SAMD9LQ8IVG5 1584 aa19.76■□□□□ 0.75
LSM2-208ENST00000375661 IQSEC2Q5JU85 1478 aa19.73■□□□□ 0.75
LSM2-208ENST00000375661 NPATQ14207 1427 aa19.73■□□□□ 0.75
LSM2-208ENST00000375661 NCOA1Q15788 1441 aa19.72■□□□□ 0.75
LSM2-208ENST00000375661 LTBP4Q8N2S1 1624 aa19.71■□□□□ 0.75
LSM2-208ENST00000375661 SYCP2Q9BX26 1530 aa19.71■□□□□ 0.75
LSM2-208ENST00000375661 SUPT6HQ7KZ85 1726 aaKnown RBP19.71■□□□□ 0.75
LSM2-208ENST00000375661 PLEKHH2Q8IVE3 1493 aa19.7■□□□□ 0.74
LSM2-208ENST00000375661 GPATCH8Q9UKJ3 1502 aaKnown RBP19.7■□□□□ 0.74
LSM2-208ENST00000375661 KIAA1107Q9UPP5 1409 aa19.69■□□□□ 0.74
LSM2-208ENST00000375661 ATP7AQ04656 1500 aa19.68■□□□□ 0.74
LSM2-208ENST00000375661 SPAG9O60271 1321 aaKnown RBP19.68■□□□□ 0.74
LSM2-208ENST00000375661 PLXNC1O60486 1568 aa19.67■□□□□ 0.74
LSM2-208ENST00000375661 INO80Q9ULG1 1556 aaPredicted RBP19.67■□□□□ 0.74
LSM2-208ENST00000375661 CAMSAP1Q5T5Y3 1602 aa19.67■□□□□ 0.74
LSM2-208ENST00000375661 ZNF142P52746 1687 aaPredicted RBP19.67■□□□□ 0.74
LSM2-208ENST00000375661 CLTCQ00610 1675 aaKnown RBP19.66■□□□□ 0.74
LSM2-208ENST00000375661 ZNF777Q9ULD5 760 aaPredicted RBP19.66■□□□□ 0.74
LSM2-208ENST00000375661 ZMYM3Q14202 1370 aa19.66■□□□□ 0.74
LSM2-208ENST00000375661 DISP3Q9P2K9 1392 aa19.65■□□□□ 0.74
LSM2-208ENST00000375661 ADGBQ8N7X0 1667 aa19.65■□□□□ 0.74
LSM2-208ENST00000375661 MYO3AQ8NEV4 1616 aa19.63■□□□□ 0.73
LSM2-208ENST00000375661 A2MP01023 1474 aa19.63■□□□□ 0.73
LSM2-208ENST00000375661 HNRNPMP52272 730 aaKnown RBP eCLIP19.62■□□□□ 0.73
LSM2-208ENST00000375661 PLA2R1Q13018 1463 aa19.61■□□□□ 0.73
LSM2-208ENST00000375661 SPATA31D1Q6ZQQ2 1576 aa19.61■□□□□ 0.73
LSM2-208ENST00000375661 CCNB3Q8WWL7 1395 aa19.6■□□□□ 0.73
LSM2-208ENST00000375661 CFDP1Q9UEE9 299 aaPredicted RBP19.6■□□□□ 0.73
LSM2-208ENST00000375661 PPP6R1Q9UPN7 881 aa19.6■□□□□ 0.73
LSM2-208ENST00000375661 CEP170BQ9Y4F5 1589 aaPredicted RBP19.58■□□□□ 0.73
LSM2-208ENST00000375661 PKD2Q13563 968 aa19.57■□□□□ 0.72
LSM2-208ENST00000375661 PTPRKQ15262 1439 aa19.57■□□□□ 0.72
LSM2-208ENST00000375661 MTUS2Q5JR59 1369 aa19.57■□□□□ 0.72
LSM2-208ENST00000375661 SOCS7O14512 581 aa19.56■□□□□ 0.72
LSM2-208ENST00000375661 TCOF1Q13428 1488 aaKnown RBP19.55■□□□□ 0.72
LSM2-208ENST00000375661 ILDR2Q71H61 639 aa19.55■□□□□ 0.72
LSM2-208ENST00000375661 TIAM1Q13009 1591 aa19.54■□□□□ 0.72
LSM2-208ENST00000375661 EHBP1L1Q8N3D4 1523 aa19.53■□□□□ 0.72
LSM2-208ENST00000375661 NCKAP5LQ9HCH0 1330 aa19.52■□□□□ 0.72
LSM2-208ENST00000375661 RTEL1-TNFRSF6BF6WH68 1400 aa19.52■□□□□ 0.72
LSM2-208ENST00000375661 GGT6Q6P531 493 aa19.52■□□□□ 0.72
LSM2-208ENST00000375661 MBD5Q9P267 1494 aa19.51■□□□□ 0.71
LSM2-208ENST00000375661 FAM135AQ9P2D6 1515 aa19.51■□□□□ 0.71
LSM2-208ENST00000375661 ZNF335Q9H4Z2 1342 aaPredicted RBP19.5■□□□□ 0.71
LSM2-208ENST00000375661 A2ML1A8K2U0 1454 aa19.49■□□□□ 0.71
LSM2-208ENST00000375661 DNMT1P26358 1616 aaKnown RBP19.49■□□□□ 0.71
LSM2-208ENST00000375661 POLR1AO95602 1720 aaPredicted RBP19.48■□□□□ 0.71
LSM2-208ENST00000375661 LOC105371045A0A1W2PR82 267 aa19.48■□□□□ 0.71
LSM2-208ENST00000375661 CEP162Q5TB80 1403 aa19.48■□□□□ 0.71
LSM2-208ENST00000375661 DHX29Q7Z478 1369 aaKnown RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms