RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 CDC42BPAQ5VT25 1732 aa28.54■■■□□ 2.16
HDAC1-201ENST00000373548 CFDP1Q9UEE9 299 aaPredicted RBP28.54■■■□□ 2.16
HDAC1-201ENST00000373548 SIN3AQ96ST3 1273 aa28.54■■■□□ 2.16
HDAC1-201ENST00000373548 KDM6BO15054 1643 aa28.53■■■□□ 2.16
HDAC1-201ENST00000373548 ROCK1Q13464 1354 aa28.52■■■□□ 2.16
HDAC1-201ENST00000373548 ABCC2Q92887 1545 aa28.47■■■□□ 2.15
HDAC1-201ENST00000373548 NEUROD1Q13562 356 aa28.47■■■□□ 2.15
HDAC1-201ENST00000373548 CROCC2H7BZ55 1655 aa28.44■■■□□ 2.14
HDAC1-201ENST00000373548 ZNF777Q9ULD5 760 aaPredicted RBP28.42■■■□□ 2.14
HDAC1-201ENST00000373548 TIMELESSQ9UNS1 1208 aa28.42■■■□□ 2.14
HDAC1-201ENST00000373548 ADGBQ8N7X0 1667 aa28.41■■■□□ 2.14
HDAC1-201ENST00000373548 DENND4BO75064 1496 aaPredicted RBP28.38■■■□□ 2.13
HDAC1-201ENST00000373548 TRIM52Q96A61 297 aa28.35■■■□□ 2.13
HDAC1-201ENST00000373548 ADGRL2O95490 1459 aa28.35■■■□□ 2.13
HDAC1-201ENST00000373548 PREX2Q70Z35 1606 aa28.34■■■□□ 2.13
HDAC1-201ENST00000373548 CDC42BPBQ9Y5S2 1711 aa28.33■■■□□ 2.13
HDAC1-201ENST00000373548 NCOA1Q15788 1441 aa28.33■■■□□ 2.13
HDAC1-201ENST00000373548 UHRF1BP1LA0JNW5 1464 aa28.33■■■□□ 2.13
HDAC1-201ENST00000373548 ZCCHC11Q5TAX3 1644 aaKnown RBP28.3■■■□□ 2.12
HDAC1-201ENST00000373548 ACIN1Q9UKV3 1341 aaKnown RBP28.3■■■□□ 2.12
HDAC1-201ENST00000373548 TTC37Q6PGP7 1564 aa28.29■■■□□ 2.12
HDAC1-201ENST00000373548 SHANK2Q9UPX8 1470 aa28.28■■■□□ 2.12
HDAC1-201ENST00000373548 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.27■■■□□ 2.12
HDAC1-201ENST00000373548 MPHOSPH9Q99550 1183 aa28.27■■■□□ 2.12
HDAC1-201ENST00000373548 KDM5BQ9UGL1 1544 aa28.26■■■□□ 2.11
HDAC1-201ENST00000373548 PPP1R15AO75807 674 aaPredicted RBP28.26■■■□□ 2.11
HDAC1-201ENST00000373548 SAMD9LQ8IVG5 1584 aa28.26■■■□□ 2.11
HDAC1-201ENST00000373548 TONSLQ96HA7 1378 aa28.26■■■□□ 2.11
HDAC1-201ENST00000373548 ARHGEF5Q12774 1597 aa28.25■■■□□ 2.11
HDAC1-201ENST00000373548 ANKRD30AQ9BXX3 1397 aa28.24■■■□□ 2.11
HDAC1-201ENST00000373548 C9orf84Q5VXU9 1444 aa28.22■■■□□ 2.11
HDAC1-201ENST00000373548 MBD5Q9P267 1494 aa28.21■■■□□ 2.11
HDAC1-201ENST00000373548 MYO5CQ9NQX4 1742 aa28.21■■■□□ 2.11
HDAC1-201ENST00000373548 HNRNPMP52272 730 aaKnown RBP eCLIP28.18■■■□□ 2.1
HDAC1-201ENST00000373548 ARHGAP5Q13017 1502 aa28.17■■■□□ 2.1
HDAC1-201ENST00000373548 PZPP20742 1482 aa28.14■■■□□ 2.1
HDAC1-201ENST00000373548 CCDC141Q6ZP82 1450 aa28.14■■■□□ 2.1
HDAC1-201ENST00000373548 MIER1Q8N108 512 aa28.14■■■□□ 2.1
HDAC1-201ENST00000373548 ANKRD50Q9ULJ7 1429 aa28.14■■■□□ 2.09
HDAC1-201ENST00000373548 TSPY4P0CV99 314 aa28.13■■■□□ 2.09
HDAC1-201ENST00000373548 TSPY10P0CW01 314 aa28.13■■■□□ 2.09
HDAC1-201ENST00000373548 FOXD1Q16676 465 aa28.12■■■□□ 2.09
HDAC1-201ENST00000373548 KCNH8Q96L42 1107 aa28.12■■■□□ 2.09
HDAC1-201ENST00000373548 SYCP2Q9BX26 1530 aa28.11■■■□□ 2.09
HDAC1-201ENST00000373548 SLC4A1APQ9BWU0 796 aaKnown RBP28.1■■■□□ 2.09
HDAC1-201ENST00000373548 ANKRD30BQ9BXX2 1392 aa28.1■■■□□ 2.09
HDAC1-201ENST00000373548 RSPH4AQ5TD94 716 aa28.07■■■□□ 2.08
HDAC1-201ENST00000373548 OSCARQ8IYS5 282 aa28.06■■■□□ 2.08
HDAC1-201ENST00000373548 PLCH2O75038 1416 aa28.06■■■□□ 2.08
HDAC1-201ENST00000373548 KIF15Q9NS87 1388 aa28.05■■■□□ 2.08
HDAC1-201ENST00000373548 MAST1Q9Y2H9 1570 aa28.05■■■□□ 2.08
HDAC1-201ENST00000373548 PLEKHH2Q8IVE3 1493 aa28.04■■■□□ 2.08
HDAC1-201ENST00000373548 KIAA1107Q9UPP5 1409 aa28.04■■■□□ 2.08
HDAC1-201ENST00000373548 RPRD2Q5VT52 1461 aaKnown RBP28.03■■■□□ 2.08
HDAC1-201ENST00000373548 KDM5DQ9BY66 1539 aa27.99■■■□□ 2.07
HDAC1-201ENST00000373548 WDR7Q9Y4E6 1490 aa27.99■■■□□ 2.07
HDAC1-201ENST00000373548 ARHGEF12Q9NZN5 1544 aa27.98■■■□□ 2.07
HDAC1-201ENST00000373548 EFCAB2Q5VUJ9 269 aa27.95■■■□□ 2.06
HDAC1-201ENST00000373548 ABCC1P33527 1531 aa27.94■■■□□ 2.06
HDAC1-201ENST00000373548 NUP155O75694 1391 aa27.94■■■□□ 2.06
HDAC1-201ENST00000373548 PLXNC1O60486 1568 aa27.94■■■□□ 2.06
HDAC1-201ENST00000373548 ARAP3Q8WWN8 1544 aa27.94■■■□□ 2.06
HDAC1-201ENST00000373548 L3MBTL2Q969R5 705 aa27.94■■■□□ 2.06
HDAC1-201ENST00000373548 TEX14Q8IWB6 1497 aa27.93■■■□□ 2.06
HDAC1-201ENST00000373548 PKD2Q13563 968 aa27.92■■■□□ 2.06
HDAC1-201ENST00000373548 HIRIP3Q9BW71 556 aaPredicted RBP27.89■■■□□ 2.06
HDAC1-201ENST00000373548 ABCA9Q8IUA7 1624 aa27.88■■■□□ 2.05
HDAC1-201ENST00000373548 ASXL2Q76L83 1435 aa27.86■■■□□ 2.05
HDAC1-201ENST00000373548 TRAPPC8Q9Y2L5 1435 aa27.84■■■□□ 2.05
HDAC1-201ENST00000373548 UNC13BO14795 1591 aa27.84■■■□□ 2.05
HDAC1-201ENST00000373548 DUOX2Q9NRD8 1548 aa27.81■■■□□ 2.04
HDAC1-201ENST00000373548 FAM135AQ9P2D6 1515 aa27.81■■■□□ 2.04
HDAC1-201ENST00000373548 CENPBP07199 599 aaPredicted RBP27.79■■■□□ 2.04
HDAC1-201ENST00000373548 DDX10Q13206 875 aaKnown RBP27.79■■■□□ 2.04
HDAC1-201ENST00000373548 FANCAO15360 1455 aa27.77■■■□□ 2.04
HDAC1-201ENST00000373548 NBPF8Q3BBV2 869 aa27.76■■■□□ 2.03
HDAC1-201ENST00000373548 YTHDC1Q96MU7 727 aaKnown RBP27.75■■■□□ 2.03
HDAC1-201ENST00000373548 ERBINQ96RT1 1412 aa27.75■■■□□ 2.03
HDAC1-201ENST00000373548 IQGAP3Q86VI3 1631 aa27.72■■■□□ 2.03
HDAC1-201ENST00000373548 ZFYVE16Q7Z3T8 1539 aa27.72■■■□□ 2.03
HDAC1-201ENST00000373548 NPM1P06748 294 aaKnown RBP eCLIP27.72■■■□□ 2.03
HDAC1-201ENST00000373548 RTEL1-TNFRSF6BF6WH68 1400 aa27.71■■■□□ 2.03
HDAC1-201ENST00000373548 HSPA5P11021 654 aaKnown RBP27.71■■■□□ 2.03
HDAC1-201ENST00000373548 MAGI2Q86UL8 1455 aa27.71■■■□□ 2.03
HDAC1-201ENST00000373548 AFAP1Q8N556 730 aa27.7■■■□□ 2.03
HDAC1-201ENST00000373548 SPAG9O60271 1321 aaKnown RBP27.7■■■□□ 2.02
HDAC1-201ENST00000373548 EIF4G2P78344 907 aaKnown RBP eCLIP27.68■■■□□ 2.022e-8■■■■■ 38.7
HDAC1-201ENST00000373548 ADGRL1O94910 1474 aa27.66■■■□□ 2.02
HDAC1-201ENST00000373548 INO80Q9ULG1 1556 aaPredicted RBP27.66■■■□□ 2.02
HDAC1-201ENST00000373548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.65■■■□□ 2.025e-7■■□□□ 13.5
HDAC1-201ENST00000373548 SCAPERQ9BY12 1400 aa27.63■■■□□ 2.01
HDAC1-201ENST00000373548 ATP7AQ04656 1500 aa27.63■■■□□ 2.01
HDAC1-201ENST00000373548 SCAF1Q9H7N4 1312 aaKnown RBP27.59■■■□□ 2.01
HDAC1-201ENST00000373548 PLA2R1Q13018 1463 aa27.59■■■□□ 2.01
HDAC1-201ENST00000373548 UHRF1BP1Q6BDS2 1440 aa27.58■■■□□ 2.01
HDAC1-201ENST00000373548 SPATA31E1Q6ZUB1 1445 aa27.57■■■□□ 2
HDAC1-201ENST00000373548 WASHC2AQ641Q2 1341 aa27.56■■■□□ 2
HDAC1-201ENST00000373548 CCDC144AA2RUR9 1427 aa27.55■■■□□ 2
HDAC1-201ENST00000373548 CD109Q6YHK3 1445 aa27.55■■■□□ 2
HDAC1-201ENST00000373548 DEPDC5O75140 1603 aa27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms