RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 KIAA1211Q6ZU35 1233 aa8.2□□□□□ -1.1
UPF2-201ENST00000356352 DRC7Q8IY82 874 aa8.2□□□□□ -1.1
UPF2-201ENST00000356352 TMX4Q9H1E5 349 aaPredicted RBP8.2□□□□□ -1.1
UPF2-201ENST00000356352 HDAC5Q9UQL6 1122 aa8.2□□□□□ -1.1
UPF2-201ENST00000356352 TAOK2Q9UL54 1235 aa8.19□□□□□ -1.1
UPF2-201ENST00000356352 CCDC34Q96HJ3 373 aa8.19□□□□□ -1.1
UPF2-201ENST00000356352 KTN1Q86UP2 1357 aaKnown RBP8.19□□□□□ -1.1
UPF2-201ENST00000356352 CCER2I3L3R5 266 aa8.19□□□□□ -1.1
UPF2-201ENST00000356352 TPM4P67936 248 aa8.19□□□□□ -1.1
UPF2-201ENST00000356352 EIF3AQ14152 1382 aaKnown RBP8.18□□□□□ -1.1
UPF2-201ENST00000356352 GBP4Q96PP9 640 aa8.18□□□□□ -1.1
UPF2-201ENST00000356352 DCAF11Q8TEB1 546 aa8.18□□□□□ -1.1
UPF2-201ENST00000356352 SYAP1Q96A49 352 aaPredicted RBP8.18□□□□□ -1.1
UPF2-201ENST00000356352 ISY1Q9ULR0 285 aaKnown RBP8.17□□□□□ -1.1
UPF2-201ENST00000356352 EIF4G1Q04637 1599 aaKnown RBP8.17□□□□□ -1.1
UPF2-201ENST00000356352 GPATCH3Q96I76 525 aa8.17□□□□□ -1.1
UPF2-201ENST00000356352 USP35Q9P2H5 1018 aa8.16□□□□□ -1.1
UPF2-201ENST00000356352 ARHGAP35Q9NRY4 1499 aa8.16□□□□□ -1.1
UPF2-201ENST00000356352 CSPP1Q1MSJ5 1256 aa8.16□□□□□ -1.1
UPF2-201ENST00000356352 RWDD1Q9H446 243 aaPredicted RBP8.16□□□□□ -1.1
UPF2-201ENST00000356352 CARMIL2Q6F5E8 1435 aa8.15□□□□□ -1.1
UPF2-201ENST00000356352 SPAG9O60271 1321 aaKnown RBP8.15□□□□□ -1.11
UPF2-201ENST00000356352 RALBP1Q15311 655 aa8.14□□□□□ -1.11
UPF2-201ENST00000356352 NOC3LQ8WTT2 800 aaKnown RBP8.14□□□□□ -1.11
UPF2-201ENST00000356352 BAZ1AQ9NRL2 1556 aaPredicted RBP8.13□□□□□ -1.11
UPF2-201ENST00000356352 PMFBP1Q8TBY8 1022 aa8.13□□□□□ -1.11
UPF2-201ENST00000356352 SETD5Q9C0A6 1442 aa8.13□□□□□ -1.11
UPF2-201ENST00000356352 HMMRO75330 724 aa8.13□□□□□ -1.11
UPF2-201ENST00000356352 SIN3AQ96ST3 1273 aa8.13□□□□□ -1.11
UPF2-201ENST00000356352 STK31Q9BXU1 1019 aa8.13□□□□□ -1.11
UPF2-201ENST00000356352 CARMIL1Q5VZK9 1371 aa8.12□□□□□ -1.11
UPF2-201ENST00000356352 CSB-PGBD3P0DP91 1061 aa8.12□□□□□ -1.11
UPF2-201ENST00000356352 TRHP20396 242 aaPredicted RBP8.11□□□□□ -1.11
UPF2-201ENST00000356352 LMOD3Q0VAK6 560 aa8.11□□□□□ -1.11
UPF2-201ENST00000356352 GORABQ5T7V8 394 aa8.11□□□□□ -1.11
UPF2-201ENST00000356352 CHMP4CQ96CF2 233 aa8.11□□□□□ -1.11
UPF2-201ENST00000356352 ROCK2O75116 1388 aaKnown RBP8.11□□□□□ -1.11
UPF2-201ENST00000356352 SOX12O15370 315 aa8.11□□□□□ -1.11
UPF2-201ENST00000356352 SENP3-EIF4A1A0A087X0R7 540 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 B4GALNT3Q6L9W6 998 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 ITPRIPQ8IWB1 547 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 MLECQ14165 292 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 CUX2O14529 1486 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 KIF3AQ9Y496 699 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 TCERG1O14776 1098 aaKnown RBP8.1□□□□□ -1.11
UPF2-201ENST00000356352 TAF7LQ5H9L4 462 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 GOLGA6L1Q8N7Z2 621 aa8.1□□□□□ -1.11
UPF2-201ENST00000356352 ANKRD30AQ9BXX3 1397 aa8.09□□□□□ -1.11
UPF2-201ENST00000356352 TERF2IPQ9NYB0 399 aa8.09□□□□□ -1.11
UPF2-201ENST00000356352 PAK3O75914 559 aaPredicted RBP8.09□□□□□ -1.11
UPF2-201ENST00000356352 U2AF1L5P0DN76 240 aaPredicted RBP8.09□□□□□ -1.11
UPF2-201ENST00000356352 U2AF1Q01081 240 aaKnown RBP eCLIP8.09□□□□□ -1.11
UPF2-201ENST00000356352 NCBP3Q53F19 620 aaKnown RBP8.09□□□□□ -1.11
UPF2-201ENST00000356352 HSPA5P11021 654 aaKnown RBP8.08□□□□□ -1.12
UPF2-201ENST00000356352 HSP90B1P14625 803 aaKnown RBP8.08□□□□□ -1.12
UPF2-201ENST00000356352 PHF14O94880 888 aa8.08□□□□□ -1.12
UPF2-201ENST00000356352 FMN1Q68DA7 1419 aa8.08□□□□□ -1.12
UPF2-201ENST00000356352 PKD2Q13563 968 aa8.08□□□□□ -1.12
UPF2-201ENST00000356352 RCAN3Q9UKA8 241 aa8.08□□□□□ -1.12
UPF2-201ENST00000356352 PHLDB1Q86UU1 1377 aa8.08□□□□□ -1.12
UPF2-201ENST00000356352 GGT6Q6P531 493 aa8.08□□□□□ -1.12
UPF2-201ENST00000356352 G3V3G9 751 aa8.07□□□□□ -1.12
UPF2-201ENST00000356352 SAFB2Q14151 953 aaKnown RBP eCLIP8.07□□□□□ -1.12
UPF2-201ENST00000356352 DCAF8Q5TAQ9 597 aa8.07□□□□□ -1.12
UPF2-201ENST00000356352 EFCAB2Q5VUJ9 269 aa8.07□□□□□ -1.12
UPF2-201ENST00000356352 STK26Q9P289 416 aa8.07□□□□□ -1.12
UPF2-201ENST00000356352 EID1Q9Y6B2 187 aa8.07□□□□□ -1.12
UPF2-201ENST00000356352 CEP89Q96ST8 783 aa8.07□□□□□ -1.12
UPF2-201ENST00000356352 A0A0U1RQG5 324 aaPredicted RBP8.07□□□□□ -1.12
UPF2-201ENST00000356352 RASSF8Q8NHQ8 419 aa8.06□□□□□ -1.12
UPF2-201ENST00000356352 APBB1O00213 710 aa8.06□□□□□ -1.12
UPF2-201ENST00000356352 SPRYD3Q8NCJ5 442 aa8.06□□□□□ -1.12
UPF2-201ENST00000356352 ZNF330Q9Y3S2 320 aaPredicted RBP8.06□□□□□ -1.12
UPF2-201ENST00000356352 TPM3P06753 285 aa8.05□□□□□ -1.12
UPF2-201ENST00000356352 RSPH4AQ5TD94 716 aa8.05□□□□□ -1.12
UPF2-201ENST00000356352 RTN4Q9NQC3 1192 aaKnown RBP8.05□□□□□ -1.12
UPF2-201ENST00000356352 PDE3BQ13370 1112 aa8.05□□□□□ -1.12
UPF2-201ENST00000356352 CHMP3Q9Y3E7 222 aa8.05□□□□□ -1.12
UPF2-201ENST00000356352 VPS8Q8N3P4 1428 aa8.05□□□□□ -1.12
UPF2-201ENST00000356352 PRM3Q9NNZ6 103 aa8.05□□□□□ -1.12
UPF2-201ENST00000356352 SMC4Q9NTJ3 1288 aa8.05□□□□□ -1.12
UPF2-201ENST00000356352 PDS5BQ9NTI5 1447 aa8.04□□□□□ -1.12
UPF2-201ENST00000356352 TRIM6-TRIM34B2RNG4 842 aa8.04□□□□□ -1.12
UPF2-201ENST00000356352 KIF16BQ96L93 1317 aa8.04□□□□□ -1.12
UPF2-201ENST00000356352 GOLGA6L3A6NEY3 463 aa8.04□□□□□ -1.12
UPF2-201ENST00000356352 ST18O60284 1047 aa8.04□□□□□ -1.12
UPF2-201ENST00000356352 NUP155O75694 1391 aa8.04□□□□□ -1.12
UPF2-201ENST00000356352 CCDC9Q9Y3X0 531 aaKnown RBP8.03□□□□□ -1.12
UPF2-201ENST00000356352 UACAQ9BZF9 1416 aa8.03□□□□□ -1.12
UPF2-201ENST00000356352 DEKP35659 375 aaKnown RBP8.03□□□□□ -1.12
UPF2-201ENST00000356352 MYO15BQ96JP2 1530 aa8.03□□□□□ -1.12
UPF2-201ENST00000356352 TPM2P07951 284 aa8.03□□□□□ -1.12
UPF2-201ENST00000356352 LRRFIP1Q32MZ4 808 aaKnown RBP8.03□□□□□ -1.12
UPF2-201ENST00000356352 MARCH6O60337 910 aa8.03□□□□□ -1.12
UPF2-201ENST00000356352 CENPJQ9HC77 1338 aaPredicted RBP8.02□□□□□ -1.13
UPF2-201ENST00000356352 MPHOSPH9Q99550 1183 aa8.02□□□□□ -1.13
UPF2-201ENST00000356352 MFAP1P55081 439 aaKnown RBP8.02□□□□□ -1.13
UPF2-201ENST00000356352 TNNT3P45378 269 aaPredicted RBP8.01□□□□□ -1.13
UPF2-201ENST00000356352 DDX11L8A8MPP1 907 aa8.01□□□□□ -1.13
UPF2-201ENST00000356352 AMPHP49418 695 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms