RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 MROH2BQ7Z745 1585 aa13.2□□□□□ -0.3
VPS13A-201ENST00000355766 EFCAB3Q8N7B9 438 aa13.19□□□□□ -0.3
VPS13A-201ENST00000355766 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.17□□□□□ -0.3
VPS13A-201ENST00000355766 C3orf67Q6ZVT6 689 aa13.17□□□□□ -0.3
VPS13A-201ENST00000355766 ZFP91Q96JP5 570 aaPredicted RBP13.17□□□□□ -0.3
VPS13A-201ENST00000355766 VGFO15240 615 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-201ENST00000355766 CEP164Q9UPV0 1460 aa13.16□□□□□ -0.3
VPS13A-201ENST00000355766 ST18O60284 1047 aa13.12□□□□□ -0.31
VPS13A-201ENST00000355766 BOLA1Q9Y3E2 137 aa13.11□□□□□ -0.31
VPS13A-201ENST00000355766 ECM2O94769 699 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-201ENST00000355766 PLSCR2Q9NRY7 297 aa13.09□□□□□ -0.31
VPS13A-201ENST00000355766 FANCD2Q9BXW9 1451 aa13.09□□□□□ -0.31
VPS13A-201ENST00000355766 PKD2Q13563 968 aa13.08□□□□□ -0.32
VPS13A-201ENST00000355766 RIMBP3CA6NJZ7 1639 aa13.07□□□□□ -0.32
VPS13A-201ENST00000355766 RIMBP3BA6NNM3 1639 aa13.07□□□□□ -0.32
VPS13A-201ENST00000355766 RIMBP3Q9UFD9 1639 aa13.07□□□□□ -0.32
VPS13A-201ENST00000355766 G3V3G9 751 aa13.07□□□□□ -0.32
VPS13A-201ENST00000355766 SNPHO15079 494 aa13.07□□□□□ -0.32
VPS13A-201ENST00000355766 PCDH10Q9P2E7 1040 aa13.07□□□□□ -0.32
VPS13A-201ENST00000355766 SOX12O15370 315 aa13.05□□□□□ -0.32
VPS13A-201ENST00000355766 TMEM121BQ9BXQ6 578 aaPredicted RBP13.03□□□□□ -0.32
VPS13A-201ENST00000355766 BCL11BQ9C0K0 894 aaPredicted RBP13.03□□□□□ -0.32
VPS13A-201ENST00000355766 TAOK2Q9UL54 1235 aa13.03□□□□□ -0.32
VPS13A-201ENST00000355766 PHF8Q9UPP1 1060 aa13.02□□□□□ -0.33
VPS13A-201ENST00000355766 URB2Q14146 1524 aaKnown RBP13.02□□□□□ -0.33
VPS13A-201ENST00000355766 MS4A4AQ96JQ5 239 aa13.01□□□□□ -0.33
VPS13A-201ENST00000355766 CFTRP13569 1480 aa13.01□□□□□ -0.33
VPS13A-201ENST00000355766 ARHGEF11O15085 1522 aa13.01□□□□□ -0.33
VPS13A-201ENST00000355766 WIZO95785 1651 aa13□□□□□ -0.33
VPS13A-201ENST00000355766 RGL2O15211 777 aa13□□□□□ -0.33
VPS13A-201ENST00000355766 STK24Q9Y6E0 443 aa12.99□□□□□ -0.33
VPS13A-201ENST00000355766 MICALL2Q8IY33 904 aa12.96□□□□□ -0.33
VPS13A-201ENST00000355766 STK25O00506 426 aa12.95□□□□□ -0.34
VPS13A-201ENST00000355766 CDAN1Q8IWY9 1227 aa12.95□□□□□ -0.34
VPS13A-201ENST00000355766 MARVELD3Q96A59 401 aa12.94□□□□□ -0.34
VPS13A-201ENST00000355766 NLRP6P59044 892 aa12.92□□□□□ -0.34
VPS13A-201ENST00000355766 FBXO22Q8NEZ5 403 aa12.92□□□□□ -0.34
VPS13A-201ENST00000355766 ZNF608Q9ULD9 1512 aaPredicted RBP12.91□□□□□ -0.34
VPS13A-201ENST00000355766 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
VPS13A-201ENST00000355766 TMEM92Q6UXU6 159 aa12.9□□□□□ -0.34
VPS13A-201ENST00000355766 HOXB3P14651 431 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-201ENST00000355766 MFRPQ9BY79 579 aa12.89□□□□□ -0.35
VPS13A-201ENST00000355766 TOP2AP11388 1531 aaKnown RBP12.87□□□□□ -0.35
VPS13A-201ENST00000355766 ARAP1Q96P48 1450 aa12.86□□□□□ -0.35
VPS13A-201ENST00000355766 EIF4G3O43432 1585 aaKnown RBP12.85□□□□□ -0.35
VPS13A-201ENST00000355766 EMP3P54852 163 aa12.84□□□□□ -0.35
VPS13A-201ENST00000355766 CYB5RLQ6IPT4 315 aa12.84□□□□□ -0.35
VPS13A-201ENST00000355766 PRDM2Q13029 1718 aa12.82□□□□□ -0.36
VPS13A-201ENST00000355766 RSF1Q96T23 1441 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-201ENST00000355766 TOPBP1Q92547 1522 aa12.8□□□□□ -0.36
VPS13A-201ENST00000355766 DOK7Q18PE1 504 aa12.8□□□□□ -0.36
VPS13A-201ENST00000355766 ZNF710Q8N1W2 664 aa12.79□□□□□ -0.36
VPS13A-201ENST00000355766 CHD1O14646 1710 aa12.77□□□□□ -0.36
VPS13A-201ENST00000355766 POTEB3A0JP26 581 aa12.77□□□□□ -0.37
VPS13A-201ENST00000355766 POTEBQ6S5H4 581 aa12.77□□□□□ -0.37
VPS13A-201ENST00000355766 FAM205CA6NFA0 338 aa12.76□□□□□ -0.37
VPS13A-201ENST00000355766 HOXB1P14653 301 aaPredicted RBP12.76□□□□□ -0.37
VPS13A-201ENST00000355766 HS3ST6Q96QI5 342 aa12.75□□□□□ -0.37
VPS13A-201ENST00000355766 ABCC8Q09428 1581 aa12.73□□□□□ -0.37
VPS13A-201ENST00000355766 DNMBPQ6XZF7 1577 aa12.73□□□□□ -0.37
VPS13A-201ENST00000355766 RIMBP2O15034 1052 aa12.72□□□□□ -0.37
VPS13A-201ENST00000355766 TARBP1Q13395 1621 aaKnown RBP12.72□□□□□ -0.37
VPS13A-201ENST00000355766 HS6ST3Q8IZP7 471 aa12.71□□□□□ -0.37
VPS13A-201ENST00000355766 AQRO60306 1485 aaKnown RBP eCLIP12.71□□□□□ -0.38
VPS13A-201ENST00000355766 PPP1R37O75864 691 aa12.7□□□□□ -0.38
VPS13A-201ENST00000355766 CLASP1Q7Z460 1538 aa12.68□□□□□ -0.38
VPS13A-201ENST00000355766 CCDC88BA6NC98 1476 aa12.67□□□□□ -0.38
VPS13A-201ENST00000355766 KIF3CO14782 793 aa12.67□□□□□ -0.38
VPS13A-201ENST00000355766 ZSWIM6Q9HCJ5 1215 aa12.67□□□□□ -0.38
VPS13A-201ENST00000355766 CHGAP10645 457 aaKnown RBP12.66□□□□□ -0.38
VPS13A-201ENST00000355766 GPR153Q6NV75 609 aa12.66□□□□□ -0.38
VPS13A-201ENST00000355766 POLA1P09884 1462 aaPredicted RBP12.65□□□□□ -0.38
VPS13A-201ENST00000355766 C2orf72A6NCS6 295 aa12.65□□□□□ -0.38
VPS13A-201ENST00000355766 ERBB3P21860 1342 aa12.64□□□□□ -0.39
VPS13A-201ENST00000355766 SPNS2Q8IVW8 549 aa12.64□□□□□ -0.39
VPS13A-201ENST00000355766 KRTAP3-3Q9BYR6 98 aa12.64□□□□□ -0.39
VPS13A-201ENST00000355766 KRTAP3-2Q9BYR7 98 aa12.64□□□□□ -0.39
VPS13A-201ENST00000355766 SNAPC4Q5SXM2 1469 aa12.62□□□□□ -0.39
VPS13A-201ENST00000355766 SYNJ1O43426 1573 aa12.61□□□□□ -0.39
VPS13A-201ENST00000355766 ARSIQ5FYB1 569 aa12.61□□□□□ -0.39
VPS13A-201ENST00000355766 WDR97A6NE52 1622 aa12.6□□□□□ -0.39
VPS13A-201ENST00000355766 VARS2Q5ST30 1063 aaKnown RBP12.59□□□□□ -0.39
VPS13A-201ENST00000355766 TMC2Q8TDI7 906 aa12.58□□□□□ -0.4
VPS13A-201ENST00000355766 RAD54L2Q9Y4B4 1467 aa12.58□□□□□ -0.4
VPS13A-201ENST00000355766 MMRN1Q13201 1228 aa12.57□□□□□ -0.4
VPS13A-201ENST00000355766 NKX1-1Q15270 411 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-201ENST00000355766 KHSRPQ92945 711 aaKnown RBP eCLIP12.57□□□□□ -0.48e-7■■■■□ 24
VPS13A-201ENST00000355766 MAGI1Q96QZ7 1491 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-201ENST00000355766 TDRD9Q8NDG6 1382 aaKnown RBP12.56□□□□□ -0.4
VPS13A-201ENST00000355766 SOGA1O94964 1423 aa12.54□□□□□ -0.4
VPS13A-201ENST00000355766 GAPVD1Q14C86 1478 aa12.54□□□□□ -0.4
VPS13A-201ENST00000355766 SYNJ2O15056 1496 aa12.53□□□□□ -0.4
VPS13A-201ENST00000355766 GRIN2BQ13224 1484 aa12.52□□□□□ -0.41
VPS13A-201ENST00000355766 CHMP7Q8WUX9 453 aaPredicted RBP12.51□□□□□ -0.41
VPS13A-201ENST00000355766 FGD5Q6ZNL6 1462 aa12.51□□□□□ -0.41
VPS13A-201ENST00000355766 SLC34A2O95436 690 aa12.5□□□□□ -0.41
VPS13A-201ENST00000355766 ZNF316A6NFI3 1004 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-201ENST00000355766 ZNF687Q8N1G0 1237 aa12.49□□□□□ -0.41
VPS13A-201ENST00000355766 PCDHGA4Q9Y5G9 962 aa12.47□□□□□ -0.41
VPS13A-201ENST00000355766 NUDT7P0C024 238 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms