RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 RBM19Q9Y4C8 960 aaKnown RBP18.79■□□□□ 0.6
LMX1B-201ENST00000355497 SRPK2P78362 688 aaKnown RBP18.79■□□□□ 0.6
LMX1B-201ENST00000355497 DCAF11Q8TEB1 546 aa18.78■□□□□ 0.6
LMX1B-201ENST00000355497 APBB1O00213 710 aa18.78■□□□□ 0.6
LMX1B-201ENST00000355497 KANK1Q14678 1352 aa18.78■□□□□ 0.6
LMX1B-201ENST00000355497 CCER2I3L3R5 266 aa18.78■□□□□ 0.6
LMX1B-201ENST00000355497 SOX12O15370 315 aa18.77■□□□□ 0.6
LMX1B-201ENST00000355497 ARID3AQ99856 593 aa18.77■□□□□ 0.59
LMX1B-201ENST00000355497 GZF1Q9H116 711 aaPredicted RBP18.76■□□□□ 0.59
LMX1B-201ENST00000355497 RWDD1Q9H446 243 aaPredicted RBP18.75■□□□□ 0.59
LMX1B-201ENST00000355497 HDGFP51858 240 aaKnown RBP18.74■□□□□ 0.59
LMX1B-201ENST00000355497 KTN1Q86UP2 1357 aaKnown RBP18.74■□□□□ 0.59
LMX1B-201ENST00000355497 PRM3Q9NNZ6 103 aa18.73■□□□□ 0.59
LMX1B-201ENST00000355497 GOLGA6L1Q8N7Z2 621 aa18.73■□□□□ 0.59
LMX1B-201ENST00000355497 CCNB3Q8WWL7 1395 aa18.73■□□□□ 0.59
LMX1B-201ENST00000355497 CEP164Q9UPV0 1460 aa18.73■□□□□ 0.59
LMX1B-201ENST00000355497 TNIKQ9UKE5 1360 aa18.72■□□□□ 0.59
LMX1B-201ENST00000355497 ITPRIPQ8IWB1 547 aa18.72■□□□□ 0.59
LMX1B-201ENST00000355497 KIF27Q86VH2 1401 aa18.72■□□□□ 0.59
LMX1B-201ENST00000355497 CALD1Q05682 793 aaKnown RBP18.71■□□□□ 0.59
LMX1B-201ENST00000355497 SLKQ9H2G2 1235 aaPredicted RBP18.71■□□□□ 0.59
LMX1B-201ENST00000355497 GOLGA6L3A6NEY3 463 aa18.71■□□□□ 0.59
LMX1B-201ENST00000355497 A0A0U1RQG5 324 aaPredicted RBP18.7■□□□□ 0.58
LMX1B-201ENST00000355497 HSP90B1P14625 803 aaKnown RBP18.7■□□□□ 0.58
LMX1B-201ENST00000355497 TCERG1O14776 1098 aaKnown RBP18.69■□□□□ 0.58
LMX1B-201ENST00000355497 HDGFL2Q7Z4V5 671 aaPredicted RBP18.69■□□□□ 0.58
LMX1B-201ENST00000355497 CCDC34Q96HJ3 373 aa18.68■□□□□ 0.58
LMX1B-201ENST00000355497 WRNQ14191 1432 aaPredicted RBP eCLIP18.68■□□□□ 0.58
LMX1B-201ENST00000355497 CSPP1Q1MSJ5 1256 aa18.68■□□□□ 0.58
LMX1B-201ENST00000355497 RCAN3Q9UKA8 241 aa18.67■□□□□ 0.58
LMX1B-201ENST00000355497 MYO15BQ96JP2 1530 aa18.67■□□□□ 0.58
LMX1B-201ENST00000355497 TIMELESSQ9UNS1 1208 aa18.67■□□□□ 0.58
LMX1B-201ENST00000355497 PMFBP1Q8TBY8 1022 aa18.67■□□□□ 0.58
LMX1B-201ENST00000355497 SAFB2Q14151 953 aaKnown RBP eCLIP18.66■□□□□ 0.58
LMX1B-201ENST00000355497 HSPA5P11021 654 aaKnown RBP18.66■□□□□ 0.58
LMX1B-201ENST00000355497 GPATCH3Q96I76 525 aa18.65■□□□□ 0.58
LMX1B-201ENST00000355497 MFAP1P55081 439 aaKnown RBP18.65■□□□□ 0.58
LMX1B-201ENST00000355497 USP35Q9P2H5 1018 aa18.64■□□□□ 0.57
LMX1B-201ENST00000355497 GORABQ5T7V8 394 aa18.62■□□□□ 0.57
LMX1B-201ENST00000355497 U2AF1L5P0DN76 240 aaPredicted RBP18.61■□□□□ 0.57
LMX1B-201ENST00000355497 U2AF1Q01081 240 aaKnown RBP eCLIP18.61■□□□□ 0.57
LMX1B-201ENST00000355497 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.61■□□□□ 0.57
LMX1B-201ENST00000355497 PDE4CQ08493 712 aa18.6■□□□□ 0.57
LMX1B-201ENST00000355497 ZNF330Q9Y3S2 320 aaPredicted RBP18.6■□□□□ 0.57
LMX1B-201ENST00000355497 TRIM6-TRIM34B2RNG4 842 aa18.6■□□□□ 0.57
LMX1B-201ENST00000355497 RASSF8Q8NHQ8 419 aa18.6■□□□□ 0.57
LMX1B-201ENST00000355497 RALBP1Q15311 655 aa18.59■□□□□ 0.57
LMX1B-201ENST00000355497 CHMP4AQ9BY43 222 aa18.59■□□□□ 0.57
LMX1B-201ENST00000355497 FHAD1B1AJZ9 1412 aa18.59■□□□□ 0.57
LMX1B-201ENST00000355497 STK31Q9BXU1 1019 aa18.59■□□□□ 0.57
LMX1B-201ENST00000355497 PHF14O94880 888 aa18.58■□□□□ 0.57
LMX1B-201ENST00000355497 TMX4Q9H1E5 349 aaPredicted RBP18.58■□□□□ 0.56
LMX1B-201ENST00000355497 HMMRO75330 724 aa18.58■□□□□ 0.56
LMX1B-201ENST00000355497 STK26Q9P289 416 aa18.58■□□□□ 0.56
LMX1B-201ENST00000355497 TPM3P06753 285 aa18.57■□□□□ 0.56
LMX1B-201ENST00000355497 SETQ01105 290 aaPredicted RBP18.57■□□□□ 0.56
LMX1B-201ENST00000355497 IPO9Q96P70 1041 aaKnown RBP18.57■□□□□ 0.56
LMX1B-201ENST00000355497 CSB-PGBD3P0DP91 1061 aa18.56■□□□□ 0.56
LMX1B-201ENST00000355497 SPAG9O60271 1321 aaKnown RBP18.56■□□□□ 0.56
LMX1B-201ENST00000355497 CREBRFQ8IUR6 639 aa18.56■□□□□ 0.56
LMX1B-201ENST00000355497 MLECQ14165 292 aa18.56■□□□□ 0.56
LMX1B-201ENST00000355497 CHMP3Q9Y3E7 222 aa18.56■□□□□ 0.56
LMX1B-201ENST00000355497 HDAC5Q9UQL6 1122 aa18.55■□□□□ 0.56
LMX1B-201ENST00000355497 PAK3O75914 559 aaPredicted RBP18.55■□□□□ 0.56
LMX1B-201ENST00000355497 TAF7LQ5H9L4 462 aa18.55■□□□□ 0.56
LMX1B-201ENST00000355497 SETD5Q9C0A6 1442 aa18.55■□□□□ 0.56
LMX1B-201ENST00000355497 SMC4Q9NTJ3 1288 aa18.55■□□□□ 0.56
LMX1B-201ENST00000355497 CEP89Q96ST8 783 aa18.54■□□□□ 0.56
LMX1B-201ENST00000355497 ROCK2O75116 1388 aaKnown RBP18.54■□□□□ 0.56
LMX1B-201ENST00000355497 FOXD4L1Q9NU39 408 aa18.53■□□□□ 0.56
LMX1B-201ENST00000355497 NOL8Q76FK4 1167 aaKnown RBP18.53■□□□□ 0.56
LMX1B-201ENST00000355497 EIF4G1Q04637 1599 aaKnown RBP18.52■□□□□ 0.55
LMX1B-201ENST00000355497 KIF16BQ96L93 1317 aa18.51■□□□□ 0.55
LMX1B-201ENST00000355497 ST18O60284 1047 aa18.51■□□□□ 0.55
LMX1B-201ENST00000355497 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
LMX1B-201ENST00000355497 PKD2Q13563 968 aa18.5■□□□□ 0.55
LMX1B-201ENST00000355497 EIF3AQ14152 1382 aaKnown RBP18.49■□□□□ 0.55
LMX1B-201ENST00000355497 KIF3AQ9Y496 699 aa18.49■□□□□ 0.55
LMX1B-201ENST00000355497 DDX11L8A8MPP1 907 aa18.49■□□□□ 0.55
LMX1B-201ENST00000355497 ARHGAP35Q9NRY4 1499 aa18.48■□□□□ 0.55
LMX1B-201ENST00000355497 SF3A1Q15459 793 aaKnown RBP18.47■□□□□ 0.55
LMX1B-201ENST00000355497 SLC4A10Q6U841 1118 aa18.46■□□□□ 0.55
LMX1B-201ENST00000355497 CALRP27797 417 aaKnown RBP18.46■□□□□ 0.55
LMX1B-201ENST00000355497 CENPJQ9HC77 1338 aaPredicted RBP18.45■□□□□ 0.54
LMX1B-201ENST00000355497 MARCH6O60337 910 aa18.45■□□□□ 0.54
LMX1B-201ENST00000355497 GGT6Q6P531 493 aa18.45■□□□□ 0.54
LMX1B-201ENST00000355497 TOMM22Q9NS69 142 aa18.45■□□□□ 0.54
LMX1B-201ENST00000355497 HSP90AA2PQ14568 343 aaPredicted RBP18.44■□□□□ 0.54
LMX1B-201ENST00000355497 TPD52L1Q16890 204 aaPredicted RBP18.44■□□□□ 0.54
LMX1B-201ENST00000355497 ERCC6Q03468 1493 aa18.44■□□□□ 0.54
LMX1B-201ENST00000355497 FOXD4L5Q5VV16 416 aaPredicted RBP18.43■□□□□ 0.54
LMX1B-201ENST00000355497 FOXD4L4Q8WXT5 416 aaPredicted RBP18.43■□□□□ 0.54
LMX1B-201ENST00000355497 G3V3G9 751 aa18.43■□□□□ 0.54
LMX1B-201ENST00000355497 DCAF8Q5TAQ9 597 aa18.43■□□□□ 0.54
LMX1B-201ENST00000355497 TSR1Q2NL82 804 aaKnown RBP18.43■□□□□ 0.54
LMX1B-201ENST00000355497 VPS53Q5VIR6 699 aa18.43■□□□□ 0.54
LMX1B-201ENST00000355497 PES1O00541 588 aaKnown RBP18.43■□□□□ 0.54
LMX1B-201ENST00000355497 LMOD3Q0VAK6 560 aa18.43■□□□□ 0.54
LMX1B-201ENST00000355497 H3BQV1 296 aa18.42■□□□□ 0.54
LMX1B-201ENST00000355497 IFFO2Q5TF58 517 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms